Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009638

Physical Location & Seq

Genomic Coordinates Reverse (-)

43452116 .. 43453290

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGACTTCAAGCCGGTTGGACCCTGCCGGGGCTCTCCCCCAAGCCCTGCGACACCTGCAAGTCGTCGCCGTCGGCCGTCTTCTGCCGCGCCGACTCGGCCTACCTCTGCCTGACCTGCGACTCCAAGATCCACTGCGCCAACAAGCTCGCGTCGCGCCACCAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAAGCTCCGGCCGCCGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGACGCCGACATCCACTCCGCCAATCCACTCGCGCGTCGCCACGAGCGCGTCCCCGTCGAGCCGTTCCTAGACTCGGCCGAGTCCATCGTGAAATCCACCTCGGCTGCTGGCCTCAACGACGCCGTTCCGTCTCTTAAAAACGACGACGCCGATTCTCTGCTCATTCCCAACCTGAATTTCAGCTCCAAGTTCATTGATGCTCTAGACATCAAGCCCGGGGATATGTTCTTCCCGGAAATGGAATCGTTATTCGAACTCGATTACCCGAACCCGATCCAAAACTCCAGTTCGGGTATGGATAGCGTGGTTCCGGTTCAACCCGACCCGATTCCACCTCCTCCTGTCGTCAACCAACCCCCTCGTGAAAATTGCTTCGACATTGACTTCTGCAGAAACAAGCTCTCTTCCTCCTTCAGTTATCCAGCTCAATCAATCAGCCAAAGCGTCTCGTCGTCCTCCTTAGATGTGGGAGTCGTTCCCGACGGAAATTCATTGTCCGACATTTCATATCCGTTCATCCGAAACGTGAACCACAACGGCGTGGAATCCGGCGTAGCGGCGGCTCCGGCTCCGGCTCCGGCGACTCAGCTGAGCGGAGTGGATCGCGAGGCGAGAGTGATGAGGTACAGAGAGAAAAGGAAGAACCGCAAGTTCCAGAAGACAATCCGATACGCCTCCCGCAAAGCCTATGCCGAGACGCGGCCGAGAATCAAAGGCCGGTTCGCGAAACGCACCGAGACCGAAACGGAGGTGATGGATCGGATCTTTAACTCGGCGCCGGGGAGTTATATTGCGGACGCACAATACGGCGTCGTCCCGACGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

359

Amino Acids

39.02

Weight (kDa)

6.24

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	56 - 102	1.4e-06	B-box zinc finger
CCT	PF06203	285 - 327	4.8e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57660
fragaria_vesca	FvH4_4g08980 FvH4_4g08980
malus_domestica	MD00G1017500.v1.1 MD07G1300100.v1.1 MD13G1263800.v1.1 MD16G1265000.v1.1
prunus_persica	Prupe.1G093900_v2.0.a1
pyrus_communis	pycom13g23870 pycom16g23480
rosa_chinensis	RchiOBHm_Chr4g0403841
rosa_laevigata	RLG00000008947
rosa_multiflora	Rmu_sc0005134.1_g000019
rosa_roxburghii	Rroxscaffold_5G00348440
rosa_rugosa	Rorug03G0265600 Rorug04G0045800 Rorug05G0458600
rosa_samantha	Rh4AG121100 Rh4BG114300 Rh4CG129600 Rh4DG114200
rosa_wichuraiana	Rw4G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	2 cut(s)	65, 125
AccB1I	GGYRCC	1 cut(s)	1024
AccBSI	CCGCTC	1 cut(s)	843
AclWI	GGATC	5 cut(s)	124, 517, 858, 1014, 1019
AcoI	YGGCCR	4 cut(s)	75, 201, 324, 950
AcsI	RAATTY	2 cut(s)	424, 736
AcuI	CTGAAG	1 cut(s)	646
AcvI	CACGTG	2 cut(s)	213, 246
AcyI	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	4 cut(s)	30, 322, 487, 948
AgsI	TTSAA	2 cut(s)	11, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	6 cut(s)	148, 197, 432, 649, 674, 838
AluI	AGCT	6 cut(s)	148, 197, 432, 649, 674, 838
Alw26I	GTCTC	4 cut(s)	384, 700, 938, 980
AlwI	GGATC	5 cut(s)	124, 517, 858, 1014, 1019
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	8 cut(s)	75, 99, 201, 219, 324, 358, 950, 964
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	424, 736
AspLEI	GCGC	7 cut(s)	92, 140, 159, 168, 283, 297, 1027
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	5 cut(s)	30, 465, 466, 482, 1029
AsuHPI	GGTGA	1 cut(s)	1012
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	1024
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	290, 609
BbrPI	CACGTG	2 cut(s)	213, 246
BbsI	GAAGAC	2 cut(s)	73, 914
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	341, 997
BceAI	ACGGC	7 cut(s)	55, 62, 191, 295, 356, 802, 1072
BcnI	CCSGG	5 cut(s)	30, 465, 466, 482, 1029
BcoDI	GTCTC	4 cut(s)	384, 700, 938, 980
BfaI	CTAG	2 cut(s)	317, 452
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	1028
BfuAI	ACCTGC	2 cut(s)	65, 125
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	8 cut(s)	88, 204, 228, 231, 354, 807, 810, 950
BlpI	GCTNAGC	1 cut(s)	839
BlsI	GCNGC	8 cut(s)	89, 205, 229, 232, 355, 808, 811, 951
Bme1390I	CCNGG	5 cut(s)	30, 465, 466, 482, 1029
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	6 cut(s)	23, 558, 813, 819, 825, 1026
BmrFI	CCNGG	5 cut(s)	30, 465, 466, 482, 1029
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	2 cut(s)	73, 914
BpmI	CTGGAG	1 cut(s)	517
Bpu1102I	GCTNAGC	1 cut(s)	839
Bpu14I	TTCGAA	1 cut(s)	501
BpuMI	CCSGG	5 cut(s)	30, 465, 466, 482, 1029
BsaAI	YACGTR	2 cut(s)	213, 246
BsaHI	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	5 cut(s)	29, 348, 464, 465, 1028
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 322, 487, 948
Bse118I	RCCGGY	2 cut(s)	14, 966
Bse1I	ACTGG	1 cut(s)	534
BseDI	CCNNGG	5 cut(s)	29, 348, 464, 465, 1028
BseGI	GGATG	3 cut(s)	180, 258, 765
BseLI	CCNNNNNNNGG	4 cut(s)	30, 322, 487, 948
BseMII	CTCAG	2 cut(s)	830, 848
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	576
BseX3I	CGGCCG	4 cut(s)	75, 201, 324, 950
BseXI	GCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	4 cut(s)	78, 204, 327, 953
BshFI	GGCC	8 cut(s)	77, 101, 203, 221, 326, 360, 952, 966
BshNI	GGYRCC	1 cut(s)	1024
BsiEI	CGRYCG	4 cut(s)	78, 204, 327, 953
BsiHKCI	CYCGRG	1 cut(s)	464
BslFI	GGGAC	3 cut(s)	18, 284, 1049
BslI	CCNNNNNNNGG	4 cut(s)	30, 322, 487, 948
BsmAI	GTCTC	4 cut(s)	384, 700, 938, 980
BsmBI	CGTCTC	3 cut(s)	384, 700, 938
BsmFI	GGGAC	3 cut(s)	18, 284, 1049
BsnI	GGCC	8 cut(s)	77, 101, 203, 221, 326, 360, 952, 966
Bso31I	GGTCTC	1 cut(s)	980
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	129, 522, 850, 1006, 1011
Bsp1720I	GCTNAGC	1 cut(s)	839
Bsp68I	TCGCGA	2 cut(s)	855, 974
BspANI	GGCC	8 cut(s)	77, 101, 203, 221, 326, 360, 952, 966
BspCNI	CTCAG	2 cut(s)	831, 847
BspLI	GGNNCC	6 cut(s)	23, 558, 813, 819, 825, 1026
BspMAI	CTGCAG	1 cut(s)	641
BspMI	ACCTGC	2 cut(s)	65, 125
BspPI	GGATC	5 cut(s)	124, 517, 858, 1014, 1019
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	1024
BspTNI	GGTCTC	1 cut(s)	980
BsrBI	CCGCTC	1 cut(s)	843
BsrFI	RCCGGY	2 cut(s)	14, 966
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	2 cut(s)	14, 966
BssECI	CCNNGG	5 cut(s)	29, 348, 464, 465, 1028
BssMI	GATC	5 cut(s)	129, 522, 850, 1006, 1011
BssNI	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
BssSI	CACGAG	2 cut(s)	290, 609
Bst2BI	CACGAG	2 cut(s)	290, 609
Bst6I	CTCTTC	1 cut(s)	658
BstACI	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
BstBAI	YACGTR	2 cut(s)	213, 246
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	4 cut(s)	150, 191, 195, 358
BstDEI	CTNAG	3 cut(s)	709, 834, 839
BstF5I	GGATG	3 cut(s)	180, 258, 765
BstH2I	RGCGCY	1 cut(s)	1028
BstHHI	GCGC	7 cut(s)	92, 140, 159, 168, 283, 297, 1027
BstKTI	GATC	5 cut(s)	132, 525, 853, 1009, 1014
BstMAI	GTCTC	4 cut(s)	384, 700, 938, 980
BstMBI	GATC	5 cut(s)	129, 522, 850, 1006, 1011
BstMCI	CGRYCG	4 cut(s)	78, 204, 327, 953
BstSCI	CCNGG	5 cut(s)	28, 463, 464, 480, 1027
BstSFI	CTRYAG	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	2 cut(s)	73, 914
BstX2I	RGATCY	2 cut(s)	129, 1011
BstYI	RGATCY	2 cut(s)	129, 1011
BstZI	CGGCCG	4 cut(s)	75, 201, 324, 950
BsuRI	GGCC	8 cut(s)	77, 101, 203, 221, 326, 360, 952, 966
BtsCI	GGATG	3 cut(s)	180, 258, 765
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
BtuMI	TCGCGA	2 cut(s)	855, 974
BveI	ACCTGC	2 cut(s)	65, 125
Cac8I	GCNNGC	4 cut(s)	150, 191, 195, 358
CfoI	GCGC	7 cut(s)	92, 140, 159, 168, 283, 297, 1027
Cfr10I	RCCGGY	2 cut(s)	14, 966
Cfr13I	GGNCC	1 cut(s)	21
Cfr9I	CCCGGG	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	874
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	3 cut(s)	709, 834, 839
DinI	GGCGCC	1 cut(s)	1026
DpnI	GATC	5 cut(s)	131, 524, 852, 1008, 1013
DpnII	GATC	5 cut(s)	129, 522, 850, 1006, 1011
EaeI	YGGCCR	4 cut(s)	75, 201, 324, 950
EagI	CGGCCG	4 cut(s)	75, 201, 324, 950
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	256
EclXI	CGGCCG	4 cut(s)	75, 201, 324, 950
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	980
Eco47I	GGWCC	1 cut(s)	21
Eco52I	CGGCCG	4 cut(s)	75, 201, 324, 950
Eco57I	CTGAAG	1 cut(s)	646
Eco72I	CACGTG	2 cut(s)	213, 246
Eco88I	CYCGRG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	1026
EheI	GGCGCC	1 cut(s)	1026
Esp3I	CGTCTC	3 cut(s)	384, 700, 938
FaiI	YATR	5 cut(s)	473, 545, 757, 939, 1038
FaqI	GGGAC	3 cut(s)	18, 284, 1049
FauI	CCCGC	1 cut(s)	935
Fnu4HI	GCNGC	8 cut(s)	88, 204, 228, 231, 354, 807, 810, 950
FokI	GGATG	3 cut(s)	187, 245, 752
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	8 cut(s)	88, 204, 228, 231, 354, 807, 810, 950
FspBI	CTAG	2 cut(s)	317, 452
GlaI	GCGC	7 cut(s)	91, 139, 158, 167, 282, 296, 1026
GluI	GCNGC	8 cut(s)	88, 204, 228, 231, 354, 807, 810, 950
GsuI	CTGGAG	1 cut(s)	517
HaeII	RGCGCY	1 cut(s)	1028
HaeIII	GGCC	8 cut(s)	77, 101, 203, 221, 326, 360, 952, 966
HhaI	GCGC	7 cut(s)	92, 140, 159, 168, 283, 297, 1027
Hin1I	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
Hin6I	GCGC	7 cut(s)	90, 138, 157, 166, 281, 295, 1025
HinP1I	GCGC	7 cut(s)	90, 138, 157, 166, 281, 295, 1025
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HphI	GGTGA	1 cut(s)	1012
Hpy166II	GTNNAC	2 cut(s)	598, 778
Hpy188I	TCNGA	4 cut(s)	748, 770, 917, 1011
Hpy188III	TCNNGA	9 cut(s)	172, 337, 452, 611, 728, 854, 904, 973, 1066
Hpy8I	GTNNAC	2 cut(s)	598, 778
HpyAV	CCTTC	1 cut(s)	670
HpyCH4IV	ACGT	4 cut(s)	212, 245, 774, 1070
HpyCH4V	TGCA	3 cut(s)	60, 216, 639
HpyF3I	CTNAG	3 cut(s)	709, 834, 839
HpySE526I	ACGT	4 cut(s)	212, 245, 774, 1070
Hsp92I	GRCGYC	6 cut(s)	225, 252, 369, 396, 1025, 1059
HspAI	GCGC	7 cut(s)	90, 138, 157, 166, 281, 295, 1025
KasI	GGCGCC	1 cut(s)	1024
Kzo9I	GATC	5 cut(s)	129, 522, 850, 1006, 1011
LmnI	GCTCC	5 cut(s)	202, 437, 817, 823, 829
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	317, 452
MaeII	ACGT	4 cut(s)	212, 245, 774, 1070
MaeIII	GTNAC	2 cut(s)	208, 241
MalI	GATC	5 cut(s)	131, 524, 852, 1008, 1013
MbiI	CCGCTC	1 cut(s)	843
MboI	GATC	5 cut(s)	129, 522, 850, 1006, 1011
MboII	GAAGA	5 cut(s)	73, 469, 645, 901, 919
MflI	RGATCY	2 cut(s)	129, 1011
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	3 cut(s)	424, 616, 736
Mly113I	GGCGCC	1 cut(s)	1025
MlyI	GAGTC	6 cut(s)	89, 116, 314, 338, 729, 826
MmeI	TCCRAC	1 cut(s)	771
MseI	TTAA	2 cut(s)	384, 1017
MspA1I	CMGCKG	1 cut(s)	838
MspR9I	CCNGG	5 cut(s)	30, 465, 466, 482, 1029
NarI	GGCGCC	1 cut(s)	1025
NciI	CCSGG	5 cut(s)	30, 465, 466, 482, 1029
NdeII	GATC	5 cut(s)	129, 522, 850, 1006, 1011
NlaIV	GGNNCC	6 cut(s)	23, 558, 813, 819, 825, 1026
NmeAIII	GCCGAG	7 cut(s)	77, 302, 329, 352, 967, 978, 1001
NmuCI	GTSAC	2 cut(s)	208, 241
NruI	TCGCGA	2 cut(s)	855, 974
NspV	TTCGAA	1 cut(s)	501
PaqCI	CACCTGC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	5 cut(s)	401, 491, 577, 794, 957
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	8 cut(s)	89, 205, 229, 232, 355, 808, 811, 951
PleI	GAGTC	6 cut(s)	89, 116, 314, 337, 728, 826
PluTI	GGCGCC	1 cut(s)	1028
PmaCI	CACGTG	2 cut(s)	213, 246
PmlI	CACGTG	2 cut(s)	213, 246
PpsI	GAGTC	6 cut(s)	89, 116, 314, 337, 728, 826
Ppu21I	YACGTR	2 cut(s)	213, 246
PspCI	CACGTG	2 cut(s)	213, 246
PspN4I	GGNNCC	6 cut(s)	23, 558, 813, 819, 825, 1026
PspPI	GGNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	129, 1011
PvuII	CAGCTG	1 cut(s)	838
RruI	TCGCGA	2 cut(s)	855, 974
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
SaqAI	TTAA	2 cut(s)	384, 1017
SatI	GCNGC	8 cut(s)	88, 204, 228, 231, 354, 807, 810, 950
Sau3AI	GATC	5 cut(s)	129, 522, 850, 1006, 1011
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	6 cut(s)	89, 116, 314, 338, 729, 826
ScrFI	CCNGG	5 cut(s)	30, 465, 466, 482, 1029
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	637
SfoI	GGCGCC	1 cut(s)	1026
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	1 cut(s)	21
SmaI	CCCGGG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	424, 616, 736
SspDI	GGCGCC	1 cut(s)	1024
SspMI	CTAG	2 cut(s)	317, 452
StyD4I	CCNGG	5 cut(s)	28, 463, 464, 480, 1027
TaiI	ACGT	4 cut(s)	215, 248, 777, 1073
TaqI	TCGA	4 cut(s)	306, 501, 507, 624
TaqII	GACCGA	1 cut(s)	1004
TasI	AATT	3 cut(s)	424, 616, 736
TauI	GCSGC	7 cut(s)	90, 206, 230, 233, 809, 812, 952
TfiI	GAWTC	5 cut(s)	401, 491, 577, 794, 957
Tru1I	TTAA	2 cut(s)	384, 1017
Tru9I	TTAA	2 cut(s)	384, 1017
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	2 cut(s)	208, 241
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	208, 241
TspDTI	ATGAA	4 cut(s)	430, 729, 744, 754
TspGWI	ACGGA	4 cut(s)	366, 747, 750, 1010
TspMI	CCCGGG	1 cut(s)	464
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	2 cut(s)	424, 736
XbaI	TCTAGA	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmaI	CCCGGG	1 cut(s)	464
XspI	CTAG	2 cut(s)	317, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.