Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006173

Physical Location & Seq

Genomic Coordinates Reverse (-)

23429291 .. 23431198

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTGGAGAGAACGATGAGTTTGGGGGTAGGAGGAAATGGAGAAACCTCAGGAGTCAGAGAAACGATGTGGGCACAACAAGAGCTTCTTCAAAAGATCAATCAAGAACTTGACGCAGAACGTGAAGCTTCTTCATCTGCTGCAAGCGAGGCTTTATCGATGATTCTACGGCTTCAAGGTGAGAAAGCTGCGTTGGAGATGGAAGCTAGTCAGTACAAGAGAATGGCGGAGGAGAAAATGTGTCATGCTGAGACATCTCTTGTGCTTTTCGAAGATCTGATTTATCAGAAGGAAATGGAGATTGCGTCTCTTGAGTTTCAGGTTCAGGCTTATAGATGTAAATTACTCAGCCTTGGTTGCTCTGATCCTGCTGTGATTGAGAATAAGTTCCCTGAAACTCTCATCTTTTCCGGTGAAAACTCTCGTGGCAATCAAAAGAGGAAGATGAAGAGAAATCTTTCGAGTCCATTTGATGGCATATCTAGTGAAAGAAGTTTACTTTTGTCTGATGTTAATGGTGAAAGCTTTGAGGAGAAGAAAGGTCTTGTAGAGAGTAGTTCTGTATCTCCTCGTGAAGACTTGAATGCGTATTGGGAACAGATTAGGAGAATAGATGAGCATGTTAGAGAGATTTCAGACTCTAGAGATACTCAGAAGGCATCTAAATTCCCTTTGATTAGGCGTGAGTCAATTTCACATGCGTTGGTGTCACAAGTTAGCAATACTATACTTGAGTCAGCTAAGAGTGATGTTAGTTCGATTATGGAGATGATGAAGAACCCTGAAAGATTCTCTGTAAAAGATGCTTCTTTAGAGACTCCGATTCTGTCTCCGAAGAATGTTCAAGACATCTTCGAGGTTCCTAGGACGAAAGAAAGTCTTACAATCATCTCGGAAGAAGAGGAAGCCGAAGAAAGAAATGTTAGAGGCAAGATGGTGACTAGTAATTACGATAGAAAAGTGAGTAAGCCGCCAAGAGATACGAGCATCAAGGGAGAACATTTGAGTTTGCTAAAGGAGATTCGAGAACAGCTCAATGTAATGCAGTCAGAGATGAGAAGCTTAAGATCAGAACTGCATCATCAATCTAAACCTGTGTCCAATCCCGAAGAGGATCTAGTCCTTAACTCAATTCAAGAGGCAATGATTCACTTCTGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

387

Amino Acids

44.01

Weight (kDa)

5.18

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zein-binding	PF04576	19 - 108	2.1e-32	Zein-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57830
fragaria_vesca	FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620
malus_domestica	MD02G1005000.v1.1 MD15G1149000.v1.1
prunus_persica	Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1
pyrus_communis	pycom02g00370 pycom15g13340
rosa_chinensis	RchiOBHm_Chr2g0085241
rosa_laevigata	RLG00000015670
rosa_multiflora	Rmu_sc0008510.1_g000004 Rmu_sc0011989.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155530
rosa_rugosa	Rorug01G0458500 Rorug01G0458500
rosa_samantha	Rh2AG007200 Rh2BG007800 Rh2CG008600 Rh2DG008900
rosa_wichuraiana	Rw2G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	2 cut(s)	227, 971
AclWI	GGATC	2 cut(s)	359, 1122
AcsI	RAATTY	1 cut(s)	665
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflII	CTTAAG	1 cut(s)	1063
AgsI	TTSAA	5 cut(s)	92, 176, 583, 845, 1136
AhlI	ACTAGT	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	8 cut(s)	85, 128, 188, 206, 525, 740, 1033, 1062
AluI	AGCT	8 cut(s)	85, 128, 188, 206, 525, 740, 1033, 1062
Alw26I	GTCTC	4 cut(s)	245, 312, 809, 834
AlwI	GGATC	2 cut(s)	359, 1122
ApeKI	GCWGC	2 cut(s)	140, 188
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	2 cut(s)	386, 457
AspA2I	CCTAGG	1 cut(s)	863
AsuHPI	GGTGA	4 cut(s)	191, 425, 530, 949
AsuII	TTCGAA	1 cut(s)	270
AvrII	CCTAGG	1 cut(s)	863
AxyI	CCTNAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	76
BauI	CACGAG	2 cut(s)	423, 570
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	127, 175
BccI	CCATC	3 cut(s)	193, 467, 928
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	4 cut(s)	245, 312, 809, 834
BcuI	ACTAGT	1 cut(s)	941
BfaI	CTAG	6 cut(s)	207, 483, 642, 864, 942, 1118
BfrI	CTTAAG	1 cut(s)	1063
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	141, 189, 971
BlnI	CCTAGG	1 cut(s)	863
BlsI	GCNGC	3 cut(s)	142, 190, 972
BmiI	GGNNCC	1 cut(s)	861
BmsI	GCATC	4 cut(s)	668, 793, 996, 1087
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	1017, 1049
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	332, 752
Bsa29I	ATCGAT	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	352, 863
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	1149
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	352, 863
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	1149
BseMII	CTCAG	4 cut(s)	63, 240, 361, 665
BseRI	GAGGAG	3 cut(s)	245, 545, 558
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	127, 175
BshVI	ATCGAT	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	4 cut(s)	245, 312, 809, 834
BsmBI	CGTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	5 cut(s)	96, 274, 364, 1067, 1114
BspACI	CCGC	2 cut(s)	227, 971
BspCNI	CTCAG	4 cut(s)	62, 241, 360, 664
BspDI	ATCGAT	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	861
BspPI	GGATC	2 cut(s)	359, 1122
BspT104I	TTCGAA	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	1063
BsrDI	GCAATG	1 cut(s)	1149
BssECI	CCNNGG	2 cut(s)	352, 863
BssMI	GATC	5 cut(s)	96, 274, 364, 1067, 1114
BssSI	CACGAG	2 cut(s)	423, 570
BssT1I	CCWWGG	2 cut(s)	352, 863
Bst2BI	CACGAG	2 cut(s)	423, 570
Bst6I	CTCTTC	3 cut(s)	443, 894, 1104
BstAFI	CTTAAG	1 cut(s)	1063
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	5 cut(s)	49, 249, 347, 651, 741
BstKTI	GATC	5 cut(s)	99, 277, 367, 1070, 1117
BstMAI	GTCTC	4 cut(s)	245, 312, 809, 834
BstMBI	GATC	5 cut(s)	96, 274, 364, 1067, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 357
BstNSI	RCATGY	2 cut(s)	623, 701
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	127, 175
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	274, 1114
BstYI	RGATCY	2 cut(s)	274, 1114
Bsu15I	ATCGAT	1 cut(s)	158
Bsu36I	CCTNAGG	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	2 cut(s)	122, 294
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	245, 620, 698
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	5 cut(s)	49, 249, 347, 651, 741
DpnI	GATC	5 cut(s)	98, 276, 366, 1069, 1116
DpnII	GATC	5 cut(s)	96, 274, 364, 1067, 1114
Eam1104I	CTCTTC	3 cut(s)	443, 894, 1104
EarI	CTCTTC	3 cut(s)	443, 894, 1104
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	352, 863
Eco81I	CCTNAGG	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	352, 863
ErhI	CCWWGG	2 cut(s)	352, 863
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	3 cut(s)	248, 623, 701
FaiI	YATR	7 cut(s)	246, 333, 479, 621, 699, 728, 764
FalI	AAGNNNNNCTT	6 cut(s)	72, 104, 136, 168, 864, 896
FatI	CATG	3 cut(s)	244, 619, 697
Fnu4HI	GCNGC	3 cut(s)	141, 189, 971
Fsp4HI	GCNGC	3 cut(s)	141, 189, 971
FspBI	CTAG	6 cut(s)	207, 483, 642, 864, 942, 1118
GluI	GCNGC	3 cut(s)	141, 189, 971
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	2 cut(s)	122, 294
Hin1II	CATG	3 cut(s)	248, 623, 701
HindIII	AAGCTT	3 cut(s)	126, 523, 1060
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	4 cut(s)	191, 425, 530, 949
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188III	TCNNGA	9 cut(s)	51, 104, 311, 572, 642, 845, 1025, 1106, 1136
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	2 cut(s)	283, 649
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	143, 1045, 1078
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 357
HpyF3I	CTNAG	5 cut(s)	49, 249, 347, 651, 741
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	248, 623, 701
Kzo9I	GATC	5 cut(s)	96, 274, 364, 1067, 1114
LpnPI	CCDG	9 cut(s)	36, 305, 311, 381, 405, 424, 795, 1107, 1141
Lsp1109I	GCAGC	2 cut(s)	127, 175
LweI	GCATC	4 cut(s)	668, 793, 996, 1087
MaeI	CTAG	6 cut(s)	207, 483, 642, 864, 942, 1118
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	708, 937
MalI	GATC	5 cut(s)	98, 276, 366, 1069, 1116
MboI	GATC	5 cut(s)	96, 274, 364, 1067, 1114
MflI	RGATCY	2 cut(s)	274, 1114
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	5 cut(s)	341, 665, 690, 946, 1131
MlyI	GAGTC	6 cut(s)	63, 472, 632, 695, 743, 811
MmeI	TCCRAC	1 cut(s)	174
MroXI	GAANNNNTTC	2 cut(s)	386, 457
MseI	TTAA	3 cut(s)	513, 1064, 1125
MspCI	CTTAAG	1 cut(s)	1063
MspI	CCGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	589
MwoI	GCNNNNNNNGC	2 cut(s)	149, 357
NdeII	GATC	5 cut(s)	96, 274, 364, 1067, 1114
NlaIII	CATG	3 cut(s)	248, 623, 701
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	2 cut(s)	708, 937
NspI	RCATGY	2 cut(s)	623, 701
NspV	TTCGAA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	2 cut(s)	386, 457
PfeI	GAWTC	5 cut(s)	163, 789, 823, 1021, 1147
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	142, 190, 972
PleI	GAGTC	6 cut(s)	62, 471, 632, 694, 742, 811
PpsI	GAGTC	6 cut(s)	62, 471, 632, 694, 742, 811
PspN4I	GGNNCC	1 cut(s)	861
PsuI	RGATCY	2 cut(s)	274, 1114
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	513, 1064, 1125
SatI	GCNGC	3 cut(s)	141, 189, 971
Sau3AI	GATC	5 cut(s)	96, 274, 364, 1067, 1114
SchI	GAGTC	6 cut(s)	63, 472, 632, 695, 743, 811
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	4 cut(s)	668, 793, 996, 1087
SfuI	TTCGAA	1 cut(s)	270
SmlI	CTYRAG	3 cut(s)	311, 731, 1063
SmoI	CTYRAG	3 cut(s)	311, 731, 1063
SpeI	ACTAGT	1 cut(s)	941
Sse9I	AATT	5 cut(s)	341, 665, 690, 946, 1131
SsiI	CCGC	2 cut(s)	227, 971
SspMI	CTAG	6 cut(s)	207, 483, 642, 864, 942, 1118
StyI	CCWWGG	2 cut(s)	352, 863
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	6 cut(s)	158, 270, 461, 758, 855, 1024
TasI	AATT	5 cut(s)	341, 665, 690, 946, 1131
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	973
TfiI	GAWTC	5 cut(s)	163, 789, 823, 1021, 1147
Tru1I	TTAA	3 cut(s)	513, 1064, 1125
Tru9I	TTAA	3 cut(s)	513, 1064, 1125
TseFI	GTSAC	2 cut(s)	708, 937
TseI	GCWGC	2 cut(s)	140, 188
Tsp45I	GTSAC	2 cut(s)	708, 937
TspDTI	ATGAA	3 cut(s)	123, 461, 788
Van91I	CCANNNNNTGG	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	1063
XapI	RAATTY	1 cut(s)	665
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	2 cut(s)	623, 701
XmaJI	CCTAGG	1 cut(s)	863
XmnI	GAANNNNTTC	2 cut(s)	386, 457
XspI	CTAG	6 cut(s)	207, 483, 642, 864, 942, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.