Zein-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57830 |
| fragaria_vesca | FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 |
| malus_domestica | MD02G1005000.v1.1 MD15G1149000.v1.1 |
| prunus_persica | Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 |
| pyrus_communis | pycom02g00370 pycom15g13340 |
| rosa_chinensis | RchiOBHm_Chr2g0085241 |
| rosa_laevigata | RLG00000015670 |
| rosa_multiflora | Rmu_sc0008510.1_g000004 Rmu_sc0011989.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00155530 |
| rosa_rugosa | Rorug01G0458500 Rorug01G0458500 |
| rosa_samantha | Rh2AG007200 Rh2BG007800 Rh2CG008600 Rh2DG008900 |
| rosa_wichuraiana | Rw2G000680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 15 |
| AarI | CACCTGC | 1 cut(s) | 878 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 839 |
| Acc36I | ACCTGC | 1 cut(s) | 878 |
| AccB1I | GGYRCC | 1 cut(s) | 536 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1382 |
| AciI | CCGC | 2 cut(s) | 596, 1622 |
| AclWI | GGATC | 3 cut(s) | 110, 282, 781 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcsI | RAATTY | 4 cut(s) | 562, 659, 1335, 1451 |
| AcuI | CTGAAG | 1 cut(s) | 470 |
| AfaI | GTAC | 2 cut(s) | 500, 1393 |
| AfeI | AGCGCT | 1 cut(s) | 228 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 487, 1382, 1624 |
| AflII | CTTAAG | 1 cut(s) | 1097 |
| AgsI | TTSAA | 7 cut(s) | 434, 575, 650, 994, 1175, 1457, 1543 |
| AjnI | CCWGG | 3 cut(s) | 187, 834, 1004 |
| AlwI | GGATC | 3 cut(s) | 110, 282, 781 |
| Aor51HI | AGCGCT | 1 cut(s) | 228 |
| AoxI | GGCC | 2 cut(s) | 113, 171 |
| ApeKI | GCWGC | 5 cut(s) | 4, 7, 302, 522, 1480 |
| ApoI | RAATTY | 4 cut(s) | 562, 659, 1335, 1451 |
| AspLEI | GCGC | 3 cut(s) | 35, 229, 333 |
| AspS9I | GGNCC | 1 cut(s) | 832 |
| AsuHPI | GGTGA | 2 cut(s) | 554, 1226 |
| AvaII | GGWCC | 1 cut(s) | 832 |
| BanI | GGYRCC | 1 cut(s) | 536 |
| BanII | GRGCYC | 1 cut(s) | 1638 |
| BauI | CACGAG | 1 cut(s) | 936 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 3 cut(s) | 314, 534, 1492 |
| BccI | CCATC | 4 cut(s) | 139, 163, 355, 1376 |
| BciT130I | CCWGG | 3 cut(s) | 189, 836, 1006 |
| BfaI | CTAG | 1 cut(s) | 1200 |
| BfmI | CTRYAG | 2 cut(s) | 300, 1115 |
| BfoI | RGCGCY | 2 cut(s) | 36, 230 |
| BfrI | CTTAAG | 1 cut(s) | 1097 |
| BfuAI | ACCTGC | 1 cut(s) | 878 |
| BglII | AGATCT | 1 cut(s) | 436 |
| BisI | GCNGC | 5 cut(s) | 5, 8, 303, 523, 1481 |
| BlsI | GCNGC | 5 cut(s) | 6, 9, 304, 524, 1482 |
| BmcAI | AGTACT | 1 cut(s) | 1393 |
| Bme1390I | CCNGG | 3 cut(s) | 189, 836, 1006 |
| Bme18I | GGWCC | 1 cut(s) | 832 |
| BmgT120I | GGNCC | 1 cut(s) | 832 |
| BmiI | GGNNCC | 1 cut(s) | 538 |
| BmrFI | CCNGG | 3 cut(s) | 189, 836, 1006 |
| BmrI | ACTGGG | 1 cut(s) | 95 |
| BmsI | GCATC | 4 cut(s) | 183, 299, 922, 1576 |
| BmuI | ACTGGG | 1 cut(s) | 95 |
| Bpu10I | CCTNAGC | 2 cut(s) | 411, 792 |
| BpuEI | CTTGAG | 4 cut(s) | 494, 638, 1138, 1505 |
| BsaAI | YACGTR | 1 cut(s) | 1055 |
| BsaI | GGTCTC | 1 cut(s) | 1283 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 188 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 487, 1382, 1624 |
| Bse118I | RCCGGY | 1 cut(s) | 539 |
| Bse1I | ACTGG | 4 cut(s) | 90, 141, 1083, 1293 |
| Bse3DI | GCAATG | 3 cut(s) | 598, 1342, 1665 |
| BseBI | CCWGG | 3 cut(s) | 189, 836, 1006 |
| BseDI | CCNNGG | 2 cut(s) | 174, 188 |
| BseGI | GGATG | 3 cut(s) | 198, 1291, 1633 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 487, 1382, 1624 |
| BseMI | GCAATG | 3 cut(s) | 598, 1342, 1665 |
| BseMII | CTCAG | 5 cut(s) | 89, 156, 402, 1038, 1454 |
| BseNI | ACTGG | 4 cut(s) | 90, 141, 1083, 1293 |
| BseRI | GAGGAG | 5 cut(s) | 144, 1141, 1483, 1547, 1550 |
| BseXI | GCAGC | 3 cut(s) | 314, 534, 1492 |
| BseYI | CCCAGC | 2 cut(s) | 1261, 1424 |
| BsgI | GTGCAG | 1 cut(s) | 108 |
| BshFI | GGCC | 2 cut(s) | 115, 173 |
| BshNI | GGYRCC | 1 cut(s) | 536 |
| BsiSI | CCGG | 1 cut(s) | 540 |
| BslFI | GGGAC | 2 cut(s) | 628, 1163 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 487, 1382, 1624 |
| BsmFI | GGGAC | 2 cut(s) | 628, 1163 |
| BsmI | GAATGC | 1 cut(s) | 1201 |
| BsnI | GGCC | 2 cut(s) | 115, 173 |
| Bso31I | GGTCTC | 1 cut(s) | 1283 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1638 |
| Bsp143I | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| BspACI | CCGC | 2 cut(s) | 596, 1622 |
| BspANI | GGCC | 2 cut(s) | 115, 173 |
| BspCNI | CTCAG | 5 cut(s) | 90, 157, 403, 1037, 1453 |
| BspLI | GGNNCC | 1 cut(s) | 538 |
| BspMAI | CTGCAG | 1 cut(s) | 304 |
| BspMI | ACCTGC | 1 cut(s) | 878 |
| BspPI | GGATC | 3 cut(s) | 110, 282, 781 |
| BspT107I | GGYRCC | 1 cut(s) | 536 |
| BspTI | CTTAAG | 1 cut(s) | 1097 |
| BspTNI | GGTCTC | 1 cut(s) | 1283 |
| BsrDI | GCAATG | 3 cut(s) | 598, 1342, 1665 |
| BsrFI | RCCGGY | 1 cut(s) | 539 |
| BsrI | ACTGG | 4 cut(s) | 90, 141, 1083, 1293 |
| BssAI | RCCGGY | 1 cut(s) | 539 |
| BssECI | CCNNGG | 2 cut(s) | 174, 188 |
| BssMI | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| BssSI | CACGAG | 1 cut(s) | 936 |
| Bst2BI | CACGAG | 1 cut(s) | 936 |
| Bst2UI | CCWGG | 3 cut(s) | 189, 836, 1006 |
| Bst4CI | ACNGT | 2 cut(s) | 1243, 1584 |
| BstAFI | CTTAAG | 1 cut(s) | 1097 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 519 |
| BstBAI | YACGTR | 1 cut(s) | 1055 |
| BstC8I | GCNNGC | 3 cut(s) | 48, 335, 1446 |
| BstDEI | CTNAG | 9 cut(s) | 98, 165, 411, 792, 856, 1024, 1229, 1440, 1608 |
| BstF5I | GGATG | 3 cut(s) | 198, 1291, 1633 |
| BstH2I | RGCGCY | 2 cut(s) | 36, 230 |
| BstHHI | GCGC | 3 cut(s) | 35, 229, 333 |
| BstKTI | GATC | 5 cut(s) | 105, 277, 439, 586, 789 |
| BstMBI | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 193, 233, 311, 416, 519, 1155, 1267 |
| BstNI | CCWGG | 3 cut(s) | 189, 836, 1006 |
| BstSCI | CCNGG | 3 cut(s) | 187, 834, 1004 |
| BstSFI | CTRYAG | 2 cut(s) | 300, 1115 |
| BstV1I | GCAGC | 3 cut(s) | 314, 534, 1492 |
| BstX2I | RGATCY | 1 cut(s) | 436 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 436 |
| BsuRI | GGCC | 2 cut(s) | 115, 173 |
| BtsCI | GGATG | 3 cut(s) | 198, 1291, 1633 |
| BtsIMutI | CAGTG | 2 cut(s) | 525, 1300 |
| BveI | ACCTGC | 1 cut(s) | 878 |
| Cac8I | GCNNGC | 3 cut(s) | 48, 335, 1446 |
| CfoI | GCGC | 3 cut(s) | 35, 229, 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 539 |
| Cfr13I | GGNCC | 1 cut(s) | 832 |
| CseI | GACGC | 1 cut(s) | 1147 |
| Csp6I | GTAC | 2 cut(s) | 499, 1392 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1445, 1480 |
| CviQI | GTAC | 2 cut(s) | 499, 1392 |
| DdeI | CTNAG | 9 cut(s) | 98, 165, 411, 792, 856, 1024, 1229, 1440, 1608 |
| DpnI | GATC | 5 cut(s) | 104, 276, 438, 585, 788 |
| DpnII | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| DraI | TTTAAA | 1 cut(s) | 1372 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 839 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 839 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| Eco147I | AGGCCT | 1 cut(s) | 115 |
| Eco24I | GRGCYC | 1 cut(s) | 1638 |
| Eco31I | GGTCTC | 1 cut(s) | 1283 |
| Eco32I | GATATC | 1 cut(s) | 951 |
| Eco47I | GGWCC | 1 cut(s) | 832 |
| Eco47III | AGCGCT | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 470 |
| EcoRI | GAATTC | 1 cut(s) | 659 |
| EcoRII | CCWGG | 3 cut(s) | 187, 834, 1004 |
| EcoRV | GATATC | 1 cut(s) | 951 |
| EcoT38I | GRGCYC | 1 cut(s) | 1638 |
| FaqI | GGGAC | 2 cut(s) | 628, 1163 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 8, 303, 523, 1481 |
| FokI | GGATG | 3 cut(s) | 205, 1298, 1640 |
| FriOI | GRGCYC | 1 cut(s) | 1638 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 8, 303, 523, 1481 |
| FspBI | CTAG | 1 cut(s) | 1200 |
| GlaI | GCGC | 3 cut(s) | 34, 228, 332 |
| GluI | GCNGC | 5 cut(s) | 5, 8, 303, 523, 1481 |
| GsaI | CCCAGC | 2 cut(s) | 1265, 1428 |
| HaeII | RGCGCY | 2 cut(s) | 36, 230 |
| HaeIII | GGCC | 2 cut(s) | 115, 173 |
| HapII | CCGG | 1 cut(s) | 540 |
| HgaI | GACGC | 1 cut(s) | 1147 |
| HhaI | GCGC | 3 cut(s) | 35, 229, 333 |
| Hin6I | GCGC | 3 cut(s) | 33, 227, 331 |
| HinP1I | GCGC | 3 cut(s) | 33, 227, 331 |
| HincII | GTYRAC | 2 cut(s) | 162, 1239 |
| HindII | GTYRAC | 2 cut(s) | 162, 1239 |
| HindIII | AAGCTT | 2 cut(s) | 257, 1094 |
| HinfI | GANTC | 5 cut(s) | 137, 627, 1111, 1400, 1436 |
| HpaI | GTTAAC | 1 cut(s) | 162 |
| HpaII | CCGG | 1 cut(s) | 540 |
| HphI | GGTGA | 2 cut(s) | 554, 1226 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 832, 1045, 1239 |
| Hpy188I | TCNGA | 7 cut(s) | 99, 136, 147, 268, 450, 955, 1588 |
| Hpy188III | TCNNGA | 7 cut(s) | 278, 473, 557, 850, 991, 1252, 1553 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 832, 1045, 1239 |
| HpyAV | CCTTC | 4 cut(s) | 126, 988, 1152, 1205 |
| HpyCH4III | ACNGT | 2 cut(s) | 1243, 1584 |
| HpyCH4IV | ACGT | 1 cut(s) | 1054 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 193, 233, 311, 416, 519, 1155, 1267 |
| HpyF3I | CTNAG | 9 cut(s) | 98, 165, 411, 792, 856, 1024, 1229, 1440, 1608 |
| HpySE526I | ACGT | 1 cut(s) | 1054 |
| HspAI | GCGC | 3 cut(s) | 33, 227, 331 |
| KspAI | GTTAAC | 1 cut(s) | 162 |
| Kzo9I | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| LmnI | GCTCC | 2 cut(s) | 913, 1154 |
| Lsp1109I | GCAGC | 3 cut(s) | 314, 534, 1492 |
| LweI | GCATC | 4 cut(s) | 183, 299, 922, 1576 |
| MaeI | CTAG | 1 cut(s) | 1200 |
| MaeII | ACGT | 1 cut(s) | 1054 |
| MaeIII | GTNAC | 2 cut(s) | 1055, 1429 |
| MalI | GATC | 5 cut(s) | 104, 276, 438, 585, 788 |
| MboI | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| MboII | GAAGA | 6 cut(s) | 111, 370, 446, 880, 1082, 1231 |
| MfeI | CAATTG | 1 cut(s) | 1131 |
| MflI | RGATCY | 1 cut(s) | 436 |
| MhlI | GDGCHC | 1 cut(s) | 1638 |
| MlyI | GAGTC | 1 cut(s) | 1394 |
| MmeI | TCCRAC | 3 cut(s) | 505, 1263, 1580 |
| MseI | TTAA | 8 cut(s) | 161, 509, 807, 921, 1098, 1371, 1572, 1577 |
| MslI | CAYNNNNRTG | 2 cut(s) | 69, 359 |
| MspA1I | CMGCKG | 2 cut(s) | 305, 1462 |
| MspCI | CTTAAG | 1 cut(s) | 1097 |
| MspI | CCGG | 1 cut(s) | 540 |
| MspR9I | CCNGG | 3 cut(s) | 189, 836, 1006 |
| MunI | CAATTG | 1 cut(s) | 1131 |
| Mva1269I | GAATGC | 1 cut(s) | 1201 |
| MvaI | CCWGG | 3 cut(s) | 189, 836, 1006 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 193, 233, 311, 416, 519, 1155, 1267 |
| NdeII | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| NlaIV | GGNNCC | 1 cut(s) | 538 |
| NmeAIII | GCCGAG | 1 cut(s) | 199 |
| PaqCI | CACCTGC | 1 cut(s) | 878 |
| PceI | AGGCCT | 1 cut(s) | 115 |
| PctI | GAATGC | 1 cut(s) | 1201 |
| PfeI | GAWTC | 4 cut(s) | 137, 627, 1111, 1436 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1382 |
| PfoI | TCCNGGA | 1 cut(s) | 1004 |
| PkrI | GCNGC | 5 cut(s) | 6, 9, 304, 524, 1482 |
| PleI | GAGTC | 1 cut(s) | 1394 |
| PpsI | GAGTC | 1 cut(s) | 1394 |
| Ppu21I | YACGTR | 1 cut(s) | 1055 |
| PsiI | TTATAA | 1 cut(s) | 15 |
| Psp6I | CCWGG | 3 cut(s) | 187, 834, 1004 |
| PspFI | CCCAGC | 2 cut(s) | 1261, 1424 |
| PspGI | CCWGG | 3 cut(s) | 187, 834, 1004 |
| PspN4I | GGNNCC | 1 cut(s) | 538 |
| PspPI | GGNCC | 1 cut(s) | 832 |
| PstI | CTGCAG | 1 cut(s) | 304 |
| PsuI | RGATCY | 1 cut(s) | 436 |
| PvuII | CAGCTG | 2 cut(s) | 305, 1462 |
| RsaI | GTAC | 2 cut(s) | 500, 1393 |
| RsaNI | GTAC | 2 cut(s) | 499, 1392 |
| RseI | CAYNNNNRTG | 2 cut(s) | 69, 359 |
| SaqAI | TTAA | 8 cut(s) | 161, 509, 807, 921, 1098, 1371, 1572, 1577 |
| SatI | GCNGC | 5 cut(s) | 5, 8, 303, 523, 1481 |
| Sau3AI | GATC | 5 cut(s) | 102, 274, 436, 583, 786 |
| Sau96I | GGNCC | 1 cut(s) | 832 |
| ScaI | AGTACT | 1 cut(s) | 1393 |
| SchI | GAGTC | 1 cut(s) | 1394 |
| ScrFI | CCNGG | 3 cut(s) | 189, 836, 1006 |
| SduI | GDGCHC | 1 cut(s) | 1638 |
| SfaNI | GCATC | 4 cut(s) | 183, 299, 922, 1576 |
| SfcI | CTRYAG | 2 cut(s) | 300, 1115 |
| SinI | GGWCC | 1 cut(s) | 832 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 69, 359 |
| SmlI | CTYRAG | 5 cut(s) | 473, 653, 1097, 1153, 1484 |
| SmoI | CTYRAG | 5 cut(s) | 473, 653, 1097, 1153, 1484 |
| SseBI | AGGCCT | 1 cut(s) | 115 |
| SsiI | CCGC | 2 cut(s) | 596, 1622 |
| SspI | AATATT | 2 cut(s) | 429, 1368 |
| SspMI | CTAG | 1 cut(s) | 1200 |
| StuI | AGGCCT | 1 cut(s) | 115 |
| StyD4I | CCNGG | 3 cut(s) | 187, 834, 1004 |
| TaaI | ACNGT | 2 cut(s) | 1243, 1584 |
| TaiI | ACGT | 1 cut(s) | 1057 |
| TaqI | TCGA | 1 cut(s) | 1251 |
| TatI | WGTACW | 1 cut(s) | 1391 |
| TfiI | GAWTC | 4 cut(s) | 137, 627, 1111, 1436 |
| Tru1I | TTAA | 8 cut(s) | 161, 509, 807, 921, 1098, 1371, 1572, 1577 |
| Tru9I | TTAA | 8 cut(s) | 161, 509, 807, 921, 1098, 1371, 1572, 1577 |
| TscAI | CASTG | 2 cut(s) | 532, 1300 |
| TseI | GCWGC | 5 cut(s) | 4, 7, 302, 522, 1480 |
| TspDTI | ATGAA | 6 cut(s) | 53, 324, 371, 914, 1005, 1134 |
| TspGWI | ACGGA | 1 cut(s) | 698 |
| TspRI | CASTG | 2 cut(s) | 532, 1300 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1382 |
| Vha464I | CTTAAG | 1 cut(s) | 1097 |
| VpaK11BI | GGWCC | 1 cut(s) | 832 |
| XapI | RAATTY | 4 cut(s) | 562, 659, 1335, 1451 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 43 |
| XspI | CTAG | 1 cut(s) | 1200 |
| ZrmI | AGTACT | 1 cut(s) | 1393 |