Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006173

Physical Location & Seq

Genomic Coordinates Reverse (-)

9119561 .. 9120882

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAAATTGCTTCGCTTGAGTTCCAACTTCAGGCTTATAGGCACAAGCTTTTAAGCATGGGATGCAGCACGGAGTTAGGCGCTGGTGAAAATGTATATCCGGAGAATTTGTTGTTTCAAAGGAATGATTTTGGAAGTGGGGAAGCAGGTGTTAATGGGATGATTAGAAGAATAAACTCTCGAGGCGATTTTGGCAGTGGGGAAACAGGTGTTAGCGGGGCTATTAGAAGAATCAACTCTCTACCTCCAATTGAGCTCAAGGAATTGCTCAAACAGAAAGGCACTATGGAAAGAGAAAGAGATAAAGAAAGAGAACGAGATAGAGACAGACCAATGATCCCCAAACCCGAACCTGCTACAAAAATACACGAGAAGAAGGTGGAGCAGGAAGTCAATGTCCAGAGCCTAGATGTAGAGAAGAAATCTCCAAATGATGCAGGCGGGAACATGAATACAATATGGGAGCAGATTAAGAAGTTAGATGCGCGAGTGAAAGAGATATCCGATTATAAAGATTATGGTAGGGGAAAATCTGTACTCTTGAAGGGTCCTCCATCTAGGACTAGTTCATTGCCTCCAATTCCGAAGACATGCATAAGCCCAAAAAATGAACCTGACAGTGAAGAAATTATTGCTAGTTTGGATCAACTTAAGCAGAGTGAGAATCTACAGGGAAGGGAACCGATTGTTAGCCCTTCGTGCTCCTCAAGCATCCATGATGTCTTTGAAGTCCCACAAAGTTATGAAAACAGTAAAGCTGGTGAAGGAGAGAAGAAAGAACCTAGTACATTGATTGTGAGGCTTGGTAAGCCGGATTTGGTGATGGATGAGACGACAGAAGCATATGTTAGAGATGAAACGGATAGGGTAAAGAAAATGTTGCATACCAAGAAGCAGGAGAACAAAATACCTAAACCAAGAAATGTGATAAGTAGTGCTGACTCGAATGTGAGGGAGACAGCGGTGAGTGGTGGGGTTACTGAATCTCAGCAAGCGAAATTTCAACAGTTGTGGAGGAGAATAGAGCGGCTCGAGGGAGAAAGGAATAATATAAGGCAAGAAATTAGTCATGCGGGCGAAGAGGAGTTGAAGCTGTTCCAGGAGATACACGAGCATCTTAATTTAATACAGTCTGAAATGCGTAGTTGGAAGCCTAAGAAACCCCGTCCCCAGGATGATAAGCCCTTGCACAATGTTATGGAGGCAATGCTGCACTTTTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

409

Amino Acids

46.4

Weight (kDa)

6.56

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57830
fragaria_vesca	FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620
malus_domestica	MD02G1005000.v1.1 MD15G1149000.v1.1
prunus_persica	Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1
pyrus_communis	pycom02g00370 pycom15g13340
rosa_chinensis	RchiOBHm_Chr2g0085241
rosa_laevigata	RLG00000015670
rosa_multiflora	Rmu_sc0008510.1_g000004 Rmu_sc0011989.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155530
rosa_rugosa	Rorug01G0458500 Rorug01G0458500
rosa_samantha	Rh2AG007200 Rh2BG007800 Rh2CG008600 Rh2DG008900
rosa_wichuraiana	Rw2G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	137, 361
AccBSI	CCGCTC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	487
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	5 cut(s)	216, 441, 962, 1027, 1073
AclWI	GGATC	2 cut(s)	331, 651
AcsI	RAATTY	2 cut(s)	106, 998
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	537, 787
AfiI	CCNNNNNNNGG	2 cut(s)	31, 1171
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	5 cut(s)	119, 544, 728, 1004, 1090
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	1098, 1170
AluBI	AGCT	4 cut(s)	49, 256, 758, 1093
AluI	AGCT	4 cut(s)	49, 256, 758, 1093
Alw21I	GWGCWC	2 cut(s)	258, 704
Alw26I	GTCTC	3 cut(s)	318, 824, 950
AlwI	GGATC	2 cut(s)	331, 651
Ama87I	CYCGRG	2 cut(s)	180, 1031
Aor13HI	TCCGGA	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	66, 1210
ApoI	RAATTY	2 cut(s)	106, 998
Asp700I	GAANNNNTTC	1 cut(s)	1094
AspLEI	GCGC	2 cut(s)	83, 487
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	98, 773, 832, 976
AvaI	CYCGRG	2 cut(s)	180, 1031
AvaII	GGWCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	2 cut(s)	368, 1109
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	258, 704
BbvI	GCAGC	2 cut(s)	78, 1197
BccI	CCATC	2 cut(s)	562, 817
BciT130I	CCWGG	2 cut(s)	1100, 1172
BcoDI	GTCTC	3 cut(s)	318, 824, 950
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	5 cut(s)	407, 558, 564, 636, 783
BfmI	CTRYAG	1 cut(s)	668
BfoI	RGCGCY	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	650
BfuAI	ACCTGC	2 cut(s)	137, 361
BisI	GCNGC	3 cut(s)	67, 1028, 1211
BlsI	GCNGC	3 cut(s)	68, 1029, 1212
Bme1390I	CCNGG	2 cut(s)	1100, 1172
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	2 cut(s)	180, 1031
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	549, 681
BmrFI	CCNGG	2 cut(s)	1100, 1172
BmsI	GCATC	5 cut(s)	53, 424, 472, 720, 1123
BpiI	GAAGAC	1 cut(s)	593
BpuEI	CTTGAG	3 cut(s)	38, 242, 691
BsaJI	CCNNGG	1 cut(s)	1170
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 1171
Bse3DI	GCAATG	2 cut(s)	569, 1212
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	1100, 1172
BseDI	CCNNGG	1 cut(s)	1170
BseGI	GGATG	5 cut(s)	68, 165, 711, 832, 1180
BseLI	CCNNNNNNNGG	2 cut(s)	31, 1171
BseMI	GCAATG	2 cut(s)	569, 1212
BseMII	CTCAG	1 cut(s)	1001
BseRI	GAGGAG	3 cut(s)	694, 1030, 1097
BseXI	GCAGC	2 cut(s)	78, 1197
BsgI	GTGCAG	1 cut(s)	1196
Bsh1236I	CGCG	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	258, 704
BsiHKCI	CYCGRG	2 cut(s)	180, 1031
BsiSI	CCGG	2 cut(s)	101, 812
BslFI	GGGAC	2 cut(s)	716, 1152
BslI	CCNNNNNNNGG	2 cut(s)	31, 1171
BsmAI	GTCTC	3 cut(s)	318, 824, 950
BsmBI	CGTCTC	1 cut(s)	824
BsmFI	GGGAC	2 cut(s)	716, 1152
BsoBI	CYCGRG	2 cut(s)	180, 1031
Bsp1286I	GDGCHC	2 cut(s)	258, 704
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	336, 643
BspACI	CCGC	5 cut(s)	216, 441, 962, 1027, 1073
BspCNI	CTCAG	1 cut(s)	1000
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	549, 681
BspMI	ACCTGC	2 cut(s)	137, 361
BspPI	GGATC	2 cut(s)	331, 651
BspTI	CTTAAG	1 cut(s)	650
BsrBI	CCGCTC	1 cut(s)	1027
BsrDI	GCAATG	2 cut(s)	569, 1212
BssECI	CCNNGG	1 cut(s)	1170
BssMI	GATC	2 cut(s)	336, 643
BssSI	CACGAG	2 cut(s)	368, 1109
Bst2BI	CACGAG	2 cut(s)	368, 1109
Bst2UI	CCWGG	2 cut(s)	1100, 1172
Bst4CI	ACNGT	4 cut(s)	620, 752, 1008, 1131
Bst6I	CTCTTC	1 cut(s)	1074
BstAFI	CTTAAG	1 cut(s)	650
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	439, 993, 1075
BstDEI	CTNAG	2 cut(s)	987, 1155
BstF5I	GGATG	5 cut(s)	68, 165, 711, 832, 1180
BstFNI	CGCG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 487
BstKTI	GATC	2 cut(s)	339, 646
BstMAI	GTCTC	3 cut(s)	318, 824, 950
BstMBI	GATC	2 cut(s)	336, 643
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 192, 699, 708, 808, 1219
BstNI	CCWGG	2 cut(s)	1100, 1172
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	1098, 1170
BstSFI	CTRYAG	1 cut(s)	668
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	78, 1197
BstV2I	GAAGAC	1 cut(s)	593
BtsCI	GGATG	5 cut(s)	68, 165, 711, 832, 1180
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	202, 625
BveI	ACCTGC	2 cut(s)	137, 361
Cac8I	GCNNGC	3 cut(s)	439, 993, 1075
CfoI	GCGC	2 cut(s)	83, 487
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	536, 786
CspCI	CAANNNNNGTGG	2 cut(s)	992, 1027
CviAII	CATG	5 cut(s)	58, 448, 591, 716, 1070
CviQI	GTAC	2 cut(s)	536, 786
DdeI	CTNAG	2 cut(s)	987, 1155
DpnI	GATC	2 cut(s)	338, 645
DpnII	GATC	2 cut(s)	336, 643
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	14
Eco88I	CYCGRG	2 cut(s)	180, 1031
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	1098, 1170
EcoRV	GATATC	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	596
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	5 cut(s)	61, 451, 594, 719, 1073
FaqI	GGGAC	2 cut(s)	716, 1152
FatI	CATG	5 cut(s)	57, 447, 590, 715, 1069
FauI	CCCGC	3 cut(s)	209, 434, 1066
FauNDI	CATATG	1 cut(s)	844
Fnu4HI	GCNGC	3 cut(s)	67, 1028, 1211
FokI	GGATG	5 cut(s)	75, 172, 698, 839, 1187
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	67, 1028, 1211
FspBI	CTAG	5 cut(s)	407, 558, 564, 636, 783
GlaI	GCGC	2 cut(s)	82, 486
GluI	GCNGC	3 cut(s)	67, 1028, 1211
HaeII	RGCGCY	1 cut(s)	84
HapII	CCGG	2 cut(s)	101, 812
HhaI	GCGC	2 cut(s)	83, 487
Hin1II	CATG	5 cut(s)	61, 451, 594, 719, 1073
Hin6I	GCGC	2 cut(s)	81, 485
HinP1I	GCGC	2 cut(s)	81, 485
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	4 cut(s)	231, 664, 941, 983
HpaII	CCGG	2 cut(s)	101, 812
HphI	GGTGA	4 cut(s)	98, 773, 832, 976
Hpy188I	TCNGA	3 cut(s)	505, 585, 1135
Hpy188III	TCNNGA	4 cut(s)	101, 180, 400, 541
HpyAV	CCTTC	5 cut(s)	370, 538, 669, 705, 758
HpyCH4III	ACNGT	4 cut(s)	620, 752, 1008, 1131
HpyCH4V	TGCA	6 cut(s)	66, 437, 594, 883, 1189, 1213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 192, 699, 708, 808, 1219
HpyF3I	CTNAG	2 cut(s)	987, 1155
Hsp92II	CATG	5 cut(s)	61, 451, 594, 719, 1073
HspAI	GCGC	2 cut(s)	81, 485
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	336, 643
LmnI	GCTCC	3 cut(s)	382, 463, 707
Lsp1109I	GCAGC	2 cut(s)	78, 1197
LweI	GCATC	5 cut(s)	53, 424, 472, 720, 1123
MaeI	CTAG	5 cut(s)	407, 558, 564, 636, 783
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	2 cut(s)	338, 645
MbiI	CCGCTC	1 cut(s)	1027
MboI	GATC	2 cut(s)	336, 643
MboII	GAAGA	8 cut(s)	180, 240, 385, 430, 598, 635, 784, 1091
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	258, 704
MluCI	AATT	9 cut(s)	6, 106, 249, 263, 579, 627, 998, 1062, 1120
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	2 cut(s)	49, 1127
Mph1103I	ATGCAT	1 cut(s)	596
MroI	TCCGGA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	1094
MseI	TTAA	6 cut(s)	53, 153, 471, 651, 1119, 1124
MspA1I	CMGCKG	1 cut(s)	962
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	101, 812
MspR9I	CCNGG	2 cut(s)	1100, 1172
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	2 cut(s)	1100, 1172
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	6 cut(s)	63, 192, 699, 708, 808, 1219
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	2 cut(s)	336, 643
NlaIII	CATG	5 cut(s)	61, 451, 594, 719, 1073
NlaIV	GGNNCC	2 cut(s)	549, 681
NsiI	ATGCAT	1 cut(s)	596
NspI	RCATGY	1 cut(s)	594
PaeR7I	CTCGAG	2 cut(s)	180, 1031
PaqCI	CACCTGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	1094
PfeI	GAWTC	3 cut(s)	231, 664, 983
PfoI	TCCNGGA	1 cut(s)	1098
PkrI	GCNGC	3 cut(s)	68, 1029, 1212
PleI	GAGTC	1 cut(s)	935
PpsI	GAGTC	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	1098, 1170
PspGI	CCWGG	2 cut(s)	1098, 1170
PspN4I	GGNNCC	2 cut(s)	549, 681
PspPI	GGNCC	1 cut(s)	548
PspPPI	RGGWCCY	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	1031
RsaI	GTAC	2 cut(s)	537, 787
RsaNI	GTAC	2 cut(s)	536, 786
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	6 cut(s)	53, 153, 471, 651, 1119, 1124
SatI	GCNGC	3 cut(s)	67, 1028, 1211
Sau3AI	GATC	2 cut(s)	336, 643
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	1100, 1172
SduI	GDGCHC	2 cut(s)	258, 704
SfaNI	GCATC	5 cut(s)	53, 424, 472, 720, 1123
SfcI	CTRYAG	1 cut(s)	668
Sfr274I	CTCGAG	2 cut(s)	180, 1031
SinI	GGWCC	1 cut(s)	548
SlaI	CTCGAG	2 cut(s)	180, 1031
SmlI	CTYRAG	6 cut(s)	17, 180, 257, 650, 706, 1031
SmoI	CTYRAG	6 cut(s)	17, 180, 257, 650, 706, 1031
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	9 cut(s)	6, 106, 249, 263, 579, 627, 998, 1062, 1120
SsiI	CCGC	5 cut(s)	216, 441, 962, 1027, 1073
SspMI	CTAG	5 cut(s)	407, 558, 564, 636, 783
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	1098, 1170
TaaI	ACNGT	4 cut(s)	620, 752, 1008, 1131
TaqI	TCGA	3 cut(s)	181, 944, 1032
TasI	AATT	9 cut(s)	6, 106, 249, 263, 579, 627, 998, 1062, 1120
TatI	WGTACW	2 cut(s)	535, 785
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	3 cut(s)	231, 664, 983
Tru1I	TTAA	6 cut(s)	53, 153, 471, 651, 1119, 1124
Tru9I	TTAA	6 cut(s)	53, 153, 471, 651, 1119, 1124
TscAI	CASTG	2 cut(s)	202, 625
TseI	GCWGC	2 cut(s)	66, 1210
TspDTI	ATGAA	5 cut(s)	464, 558, 624, 759, 870
TspGWI	ACGGA	2 cut(s)	86, 875
TspRI	CASTG	2 cut(s)	202, 625
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	106, 998
XceI	RCATGY	1 cut(s)	594
XhoI	CTCGAG	2 cut(s)	180, 1031
XmnI	GAANNNNTTC	1 cut(s)	1094
XspI	CTAG	5 cut(s)	407, 558, 564, 636, 783
Zsp2I	ATGCAT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.