Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006173

Physical Location & Seq

Genomic Coordinates Reverse (-)

328381 .. 331011

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00620.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGCGGATTCATTTGGGACGCCTGAGACTGATATAACATCGCTAACCGAAGCACTGAAGTCTCAGCAACACCTTCTGCAGAAGCTTTATGCTGATCTTGACCAGGAAAGAGAAGCTTCATCTACTGCAGCTGATGAAGCTCTATCAATGATACTGCGTCTGCAAGGTGAGAAGTCTGCTGTGAAGATGGAGGCCAATCAATACAAGAGACTGGCTGAGGAAAAGATCTGTCATGCTGAGGAAGCTCTTGCGATTTTCGAGGATCTTATTTATCAGAAGGAAATGGAAATTGCTTCTTTGGAGTTTCAGCTTCAGGCTTATAGGTACAAACTCTTGAGCTTGGGTGTCAGTACTGAATTAGGCATCACCGAAAATGTGTATCCGGAAAACTTGTTGCAGCAAAGAGGTGATTCTGGGGAAGCTGGTGGTGTTAGTGGGACAATTAGAAGAATCAACTCTCTGCCTCCACTTGAGCTCAAGGATTTCCTCAACAAGAAATGCTCTATGGAAAGAGAGAGTGAATATTTACCTAAAGAAAAACCTATGATACCAAAGCCGGAGTCTGCTATGAAAAAAGGAGACAAAAAGGTGGACAAGGAAGTTACTTTCCAGGGCCTTGATGCAGATAAGAAATCGAGAAGTGCTTCCAGTGGTAACCTTAATTCGATATGGGATCAGATTAAGAAGTTAGACGACCGAGTGAAAGAGATATCAGATTGTAAAGATTCTGGTGGTAGAGGAAAGTCTCTGGTTTTGAAGGGTCCATCTAGGACATGTTCATTACATCCAATTCCGAAAGTAACCACAACCACATCCCATGATACAGAAAGTGAAGATATTATTGCTACCCTTGATCATGTTAACAGTAACGAGAATGTGCAGGAAAGGGAGGCAATTACTAGTACTTCATGCTCAACTGGCGTCCATGATGTTTTTGAAGTTCCACAGAGCTATGAATGCAGTCCTAAAACTTTGGACAGTCCTAGCACATTTGACAGTCCTAAAGCTTTTGGAGGTGAGAAGAAAGAATTTACTGGCAAAGATGATTTGATATGTGATGAGATTAGTGAAGTGCATGTTCAAGATGAGACAGAGAGAGTCAAGAAAATGTTTCATGGCAAATTGCTGGAGAACAGAATGCTGAGTCGAACGACCACTGTGGACTCAACTGCAAGGGAGAGAGTGGCTGCTGCGGTTACTGAGAATCAAGCCAGATTTCAACAGTTGTGGAGGAGAATAGAGCGGCTTGAGGGGGAGAGAAGTTGTCTAAGGACTGAAATAAGTCATACAGGAGAAGAGGAGTTGAGGTTGTTCAGGGATATACGCGAGCAACTTACCTTAATTCGGTCTGAAATACATGGTTGGAAGCCTAAGCAACCTCCTCCACAGGATGACGAGCCCTTACACATTATTCAAGAGGCTATGCTACACTTTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

481

Amino Acids

54.29

Weight (kDa)

5.27

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zein-binding	PF04576	14 - 104	3.6e-33	Zein-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57830
fragaria_vesca	FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620 FvH4_1g00620
malus_domestica	MD02G1005000.v1.1 MD15G1149000.v1.1
prunus_persica	Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1 Prupe.7G266000_v2.0.a1
pyrus_communis	pycom02g00370 pycom15g13340
rosa_chinensis	RchiOBHm_Chr2g0085241
rosa_laevigata	RLG00000015670
rosa_multiflora	Rmu_sc0008510.1_g000004 Rmu_sc0011989.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155530
rosa_rugosa	Rorug01G0458500 Rorug01G0458500
rosa_samantha	Rh2AG007200 Rh2BG007800 Rh2CG008600 Rh2DG008900
rosa_wichuraiana	Rw2G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1243
AccII	CGCG	1 cut(s)	1326
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	3 cut(s)	5, 1193, 1243
AclWI	GGATC	2 cut(s)	270, 681
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	2 cut(s)	77, 296
AcyI	GRCGYC	2 cut(s)	20, 921
AfaI	GTAC	3 cut(s)	326, 352, 904
AfiI	CCNNNNNNNGG	1 cut(s)	1344
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	5 cut(s)	757, 938, 1082, 1220, 1415
AhlI	ACTAGT	1 cut(s)	899
AjnI	CCWGG	2 cut(s)	102, 609
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	6 cut(s)	20, 66, 202, 573, 750, 1082
AlwI	GGATC	2 cut(s)	270, 681
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	2 cut(s)	192, 613
ApeKI	GCWGC	4 cut(s)	128, 397, 1187, 1190
ApoI	RAATTY	1 cut(s)	1028
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	613, 761
AsuHPI	GGTGA	4 cut(s)	179, 358, 419, 1028
AvaII	GGWCC	1 cut(s)	761
BanII	GRGCYC	2 cut(s)	477, 1401
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	2 cut(s)	216, 237
BbvI	GCAGC	4 cut(s)	140, 409, 1174, 1177
BccI	CCATC	2 cut(s)	181, 772
BciT130I	CCWGG	2 cut(s)	104, 611
BciVI	GTATCC	1 cut(s)	390
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	6 cut(s)	20, 66, 202, 573, 750, 1082
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	3 cut(s)	768, 900, 984
BfmI	CTRYAG	2 cut(s)	77, 126
BfuI	GTATCC	1 cut(s)	390
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	5 cut(s)	129, 398, 1188, 1191, 1244
BlsI	GCNGC	5 cut(s)	130, 399, 1189, 1192, 1245
BmcAI	AGTACT	2 cut(s)	352, 904
Bme1390I	CCNGG	2 cut(s)	104, 611
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	613, 761
BmiI	GGNNCC	1 cut(s)	762
BmrFI	CCNGG	2 cut(s)	104, 611
BmsI	GCATC	2 cut(s)	372, 610
BpmI	CTGGAG	1 cut(s)	1148
Bpu10I	CCTNAGC	3 cut(s)	216, 237, 1371
BpuEI	CTTGAG	4 cut(s)	355, 461, 491, 1268
BsaHI	GRCGYC	2 cut(s)	20, 921
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	1292, 1322
Bsc4I	CCNNNNNNNGG	1 cut(s)	1344
Bse1I	ACTGG	4 cut(s)	216, 648, 922, 1039
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	104, 611
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	3 cut(s)	784, 812, 1396
BseLI	CCNNNNNNNGG	1 cut(s)	1344
BseMII	CTCAG	6 cut(s)	15, 77, 207, 228, 1133, 1191
BseNI	ACTGG	4 cut(s)	216, 648, 922, 1039
BseRI	GAGGAG	3 cut(s)	1246, 1313, 1371
BseXI	GCAGC	4 cut(s)	140, 409, 1174, 1177
BsgI	GTGCAG	1 cut(s)	899
Bsh1236I	CGCG	1 cut(s)	1326
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	2 cut(s)	194, 615
BsiEI	CGRYCG	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	383, 557
BslFI	GGGAC	2 cut(s)	31, 451
BslI	CCNNNNNNNGG	1 cut(s)	1344
BsmAI	GTCTC	6 cut(s)	20, 66, 202, 573, 750, 1082
BsmFI	GGGAC	2 cut(s)	31, 451
BsmI	GAATGC	2 cut(s)	962, 1143
BsnI	GGCC	2 cut(s)	194, 615
Bsp1286I	GDGCHC	2 cut(s)	477, 1401
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	94, 225, 262, 673, 853
BspACI	CCGC	3 cut(s)	5, 1193, 1243
BspANI	GGCC	2 cut(s)	194, 615
BspCNI	CTCAG	6 cut(s)	16, 76, 208, 229, 1134, 1192
BspEI	TCCGGA	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	1326
BspLI	GGNNCC	1 cut(s)	762
BspMAI	CTGCAG	2 cut(s)	81, 130
BspPI	GGATC	2 cut(s)	270, 681
BsrBI	CCGCTC	1 cut(s)	1243
BsrI	ACTGG	4 cut(s)	216, 648, 922, 1039
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	94, 225, 262, 673, 853
BssNI	GRCGYC	2 cut(s)	20, 921
Bst2UI	CCWGG	2 cut(s)	104, 611
Bst4CI	ACNGT	5 cut(s)	866, 980, 998, 1159, 1224
Bst6I	CTCTTC	1 cut(s)	1290
BstACI	GRCGYC	2 cut(s)	20, 921
BstC8I	GCNNGC	1 cut(s)	1328
BstDEI	CTNAG	8 cut(s)	24, 63, 216, 237, 1142, 1200, 1268, 1371
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	784, 812, 1396
BstFNI	CGCG	1 cut(s)	1326
BstKTI	GATC	5 cut(s)	97, 228, 265, 676, 856
BstMAI	GTCTC	6 cut(s)	20, 66, 202, 573, 750, 1082
BstMBI	GATC	5 cut(s)	94, 225, 262, 673, 853
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 242, 918, 957
BstNI	CCWGG	2 cut(s)	104, 611
BstNSI	RCATGY	2 cut(s)	777, 1079
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	102, 609
BstSFI	CTRYAG	2 cut(s)	77, 126
BstUI	CGCG	1 cut(s)	1326
BstV1I	GCAGC	4 cut(s)	140, 409, 1174, 1177
BstX2I	RGATCY	2 cut(s)	225, 262
BstYI	RGATCY	2 cut(s)	225, 262
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	194, 615
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	784, 812, 1396
BtsIMutI	CAGTG	3 cut(s)	53, 655, 1155
Cac8I	GCNNGC	1 cut(s)	1328
Cfr13I	GGNCC	2 cut(s)	613, 761
CseI	GACGC	3 cut(s)	28, 146, 910
Csp6I	GTAC	3 cut(s)	325, 351, 903
CspCI	CAANNNNNGTGG	2 cut(s)	1208, 1243
CviAII	CATG	9 cut(s)	233, 774, 818, 857, 909, 926, 1076, 1115, 1358
CviQI	GTAC	3 cut(s)	325, 351, 903
DdeI	CTNAG	8 cut(s)	24, 63, 216, 237, 1142, 1200, 1268, 1371
DpnI	GATC	5 cut(s)	96, 227, 264, 675, 855
DpnII	GATC	5 cut(s)	94, 225, 262, 673, 853
Eam1104I	CTCTTC	1 cut(s)	1290
EarI	CTCTTC	1 cut(s)	1290
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	475
Eco24I	GRGCYC	2 cut(s)	477, 1401
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	761
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	77, 296
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	102, 609
EcoRV	GATATC	1 cut(s)	711
EcoT38I	GRGCYC	2 cut(s)	477, 1401
FaeI	CATG	9 cut(s)	236, 777, 821, 860, 912, 929, 1079, 1118, 1361
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	2 cut(s)	31, 451
FatI	CATG	9 cut(s)	232, 773, 817, 856, 908, 925, 1075, 1114, 1357
FbaI	TGATCA	1 cut(s)	853
Fnu4HI	GCNGC	5 cut(s)	129, 398, 1188, 1191, 1244
FokI	GGATG	3 cut(s)	771, 799, 1403
FriOI	GRGCYC	2 cut(s)	477, 1401
Fsp4HI	GCNGC	5 cut(s)	129, 398, 1188, 1191, 1244
FspBI	CTAG	3 cut(s)	768, 900, 984
GluI	GCNGC	5 cut(s)	129, 398, 1188, 1191, 1244
GsuI	CTGGAG	1 cut(s)	1148
HaeIII	GGCC	2 cut(s)	194, 615
HapII	CCGG	2 cut(s)	383, 557
HgaI	GACGC	3 cut(s)	28, 146, 910
Hin1I	GRCGYC	2 cut(s)	20, 921
Hin1II	CATG	9 cut(s)	236, 777, 821, 860, 912, 929, 1079, 1118, 1361
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	3 cut(s)	83, 114, 1005
HinfI	GANTC	9 cut(s)	8, 410, 450, 560, 725, 1098, 1144, 1163, 1204
HpaI	GTTAAC	1 cut(s)	862
HpaII	CCGG	2 cut(s)	383, 557
HphI	GGTGA	4 cut(s)	179, 358, 419, 1028
Hpy166II	GTNNAC	3 cut(s)	592, 862, 1162
Hpy188I	TCNGA	6 cut(s)	276, 678, 715, 795, 1351, 1442
Hpy188III	TCNNGA	7 cut(s)	98, 334, 383, 636, 1082, 1102, 1415
Hpy8I	GTNNAC	3 cut(s)	592, 862, 1162
HpyAV	CCTTC	3 cut(s)	83, 271, 751
HpyCH4III	ACNGT	5 cut(s)	866, 980, 998, 1159, 1224
HpyCH4V	TGCA	9 cut(s)	79, 128, 163, 397, 623, 880, 960, 1075, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 242, 918, 957
HpyF3I	CTNAG	8 cut(s)	24, 63, 216, 237, 1142, 1200, 1268, 1371
Hsp92I	GRCGYC	2 cut(s)	20, 921
Hsp92II	CATG	9 cut(s)	236, 777, 821, 860, 912, 929, 1079, 1118, 1361
Kpn2I	TCCGGA	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	853
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	5 cut(s)	94, 225, 262, 673, 853
Lsp1109I	GCAGC	4 cut(s)	140, 409, 1174, 1177
LweI	GCATC	2 cut(s)	372, 610
MaeI	CTAG	3 cut(s)	768, 900, 984
MaeIII	GTNAC	5 cut(s)	601, 653, 799, 866, 1195
MalI	GATC	5 cut(s)	96, 227, 264, 675, 855
MbiI	CCGCTC	1 cut(s)	1243
MboI	GATC	5 cut(s)	94, 225, 262, 673, 853
MboII	GAAGA	5 cut(s)	196, 459, 845, 1033, 1307
MflI	RGATCY	2 cut(s)	225, 262
MhlI	GDGCHC	2 cut(s)	477, 1401
MluCI	AATT	9 cut(s)	288, 356, 441, 661, 789, 894, 1028, 1121, 1341
MlyI	GAGTC	4 cut(s)	569, 1107, 1153, 1157
MmeI	TCCRAC	1 cut(s)	1343
MroI	TCCGGA	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	4 cut(s)	660, 681, 861, 1340
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	2 cut(s)	383, 557
MspR9I	CCNGG	2 cut(s)	104, 611
Mva1269I	GAATGC	2 cut(s)	962, 1143
MvaI	CCWGG	2 cut(s)	104, 611
MvnI	CGCG	1 cut(s)	1326
MwoI	GCNNNNNNNGC	4 cut(s)	137, 242, 918, 957
NdeII	GATC	5 cut(s)	94, 225, 262, 673, 853
NlaIII	CATG	9 cut(s)	236, 777, 821, 860, 912, 929, 1079, 1118, 1361
NlaIV	GGNNCC	1 cut(s)	762
NspI	RCATGY	2 cut(s)	777, 1079
PciI	ACATGT	1 cut(s)	773
PctI	GAATGC	2 cut(s)	962, 1143
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	5 cut(s)	8, 410, 450, 725, 1204
PkrI	GCNGC	5 cut(s)	130, 399, 1189, 1192, 1245
PleI	GAGTC	4 cut(s)	568, 1106, 1152, 1157
PpsI	GAGTC	4 cut(s)	568, 1106, 1152, 1157
PscI	ACATGT	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	102, 609
PspEI	GGTNACC	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	102, 609
PspN4I	GGNNCC	1 cut(s)	762
PspPI	GGNCC	2 cut(s)	613, 761
PstI	CTGCAG	2 cut(s)	81, 130
PsuI	RGATCY	2 cut(s)	225, 262
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	326, 352, 904
RsaNI	GTAC	3 cut(s)	325, 351, 903
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	4 cut(s)	660, 681, 861, 1340
SatI	GCNGC	5 cut(s)	129, 398, 1188, 1191, 1244
Sau3AI	GATC	5 cut(s)	94, 225, 262, 673, 853
Sau96I	GGNCC	2 cut(s)	613, 761
ScaI	AGTACT	2 cut(s)	352, 904
SchI	GAGTC	4 cut(s)	569, 1107, 1153, 1157
ScrFI	CCNGG	2 cut(s)	104, 611
SduI	GDGCHC	2 cut(s)	477, 1401
SfaNI	GCATC	2 cut(s)	372, 610
SfcI	CTRYAG	2 cut(s)	77, 126
SinI	GGWCC	1 cut(s)	761
SmlI	CTYRAG	4 cut(s)	334, 470, 476, 1247
SmoI	CTYRAG	4 cut(s)	334, 470, 476, 1247
SpeI	ACTAGT	1 cut(s)	899
Sse9I	AATT	9 cut(s)	288, 356, 441, 661, 789, 894, 1028, 1121, 1341
SsiI	CCGC	3 cut(s)	5, 1193, 1243
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	3 cut(s)	768, 900, 984
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	102, 609
TaaI	ACNGT	5 cut(s)	866, 980, 998, 1159, 1224
TaqI	TCGA	4 cut(s)	258, 635, 665, 1147
TaqII	GACCGA	2 cut(s)	711, 1335
TasI	AATT	9 cut(s)	288, 356, 441, 661, 789, 894, 1028, 1121, 1341
TatI	WGTACW	2 cut(s)	350, 902
TauI	GCSGC	1 cut(s)	1246
TfiI	GAWTC	5 cut(s)	8, 410, 450, 725, 1204
Tru1I	TTAA	4 cut(s)	660, 681, 861, 1340
Tru9I	TTAA	4 cut(s)	660, 681, 861, 1340
TscAI	CASTG	3 cut(s)	60, 655, 1162
TseI	GCWGC	4 cut(s)	128, 397, 1187, 1190
TspDTI	ATGAA	7 cut(s)	108, 150, 584, 768, 897, 969, 1103
TspRI	CASTG	3 cut(s)	60, 655, 1162
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	1 cut(s)	1028
XceI	RCATGY	2 cut(s)	777, 1079
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	3 cut(s)	768, 900, 984
ZrmI	AGTACT	2 cut(s)	352, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.