Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007708

Physical Location & Seq

Genomic Coordinates Forward (+)

23549550 .. 23552052

Gene Structure 2503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAACTCGATATCCTTGGTGACGAGCACATAGGATATCAACGCATGGACTTCCCATCTTTTAAGCTCAGTATTGTTGGTGGTCGACCCTTTTCACATGGTGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCATGATATGGAAGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCACGTGGCTATAATTCTCGCTCACAATGGGCCAACAGGTCTTGGTTGGCAAGCAGAGGATATATGTGGAAAAGACTGGGGGGCTGAAGGCGGTGACCATGGTGATCCAGATCTAGAGCAGGCGATACGACAGTTGAAGGAGACGACTAAGTTGTCGATTCCTTTAGTTGTGTTTGGGCACATGCATAAGGAGCTGCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATAGTGACAACCAGACTGTGTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGAAAAGAGGAGCAGCAGAGTCTGAGAGTGGTGGCACAACAAGAGCTTTCACATTGGTGGAGATTTTAGATGGGAAAATCAAGAAAATAGCAGAAATTTGGGTACATGTAAATGGAAGTATGGCTAAGATTGTGGAGGAAAATACTTTGTTTGAAGATGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

222

Amino Acids

24.38

Weight (kDa)

6.2

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	8 - 220	2.8e-14	Calcineurin-like phosphoesterase
Metallophos_2	PF12850	8 - 79	5.4e-06	Calcineurin-like phosphoesterase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58200 AT5G58200
fragaria_vesca	FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01380
malus_domestica	MD02G1011000.v1.1 MD15G1156000.v1.1
prunus_persica	Prupe.7G259100_v2.0.a1
pyrus_communis	pycom02g00990 pycom15g14000
rosa_chinensis	RchiOBHm_Chr2g0086151
rosa_laevigata	RLG00000015748
rosa_multiflora	Rmu_sc0004416.1_g000001 Rmu_sc0004510.1_g000008
rosa_roxburghii	Rroxscaffold_2G00154750
rosa_rugosa	Rorug01G0466200
rosa_samantha	Rh2AG016000 Rh2BG016100 Rh2BG016200 Rh2CG016800 Rh2DG018000
rosa_wichuraiana	Rw2G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	114, 308
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	2 cut(s)	346, 656
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	67, 188, 403, 548
AluI	AGCT	4 cut(s)	67, 188, 403, 548
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	114, 308
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	188, 403, 515
ApoI	RAATTY	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	32, 314, 323
BaeGI	GKGCMC	1 cut(s)	390
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BbrPI	CACGTG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	175, 390, 527
BccI	CCATC	2 cut(s)	64, 566
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	3 cut(s)	189, 404, 516
BlsI	GCNGC	3 cut(s)	190, 405, 517
BmgT120I	GGNCC	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	16, 307, 485
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	165, 290
Bse8I	GATNNNNATC	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	16, 307, 485
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	82, 516
BseNI	ACTGG	2 cut(s)	165, 290
BseRI	GAGGAG	1 cut(s)	525
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	3 cut(s)	175, 390, 527
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	30, 390
Bsp143I	GATC	4 cut(s)	106, 208, 313, 319
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	81, 517
BspDI	ATCGAT	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	151
BspPI	GGATC	2 cut(s)	114, 308
BsrI	ACTGG	2 cut(s)	165, 290
BssECI	CCNNGG	3 cut(s)	16, 307, 485
BssMI	GATC	4 cut(s)	106, 208, 313, 319
BssT1I	CCWWGG	3 cut(s)	16, 307, 485
Bst4CI	ACNGT	3 cut(s)	342, 460, 473
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	261, 330
BstDEI	CTNAG	4 cut(s)	68, 357, 525, 627
BstDSI	CCRYGG	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	109, 211, 316, 322
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	4 cut(s)	106, 208, 313, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNSI	RCATGY	2 cut(s)	394, 611
BstPI	GGTNACC	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	175, 390, 527
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	261, 330
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	7 cut(s)	46, 98, 152, 194, 308, 391, 608
CviJI	RGCY	9 cut(s)	67, 164, 188, 218, 241, 293, 403, 548, 626
CviKI_1	RGCY	9 cut(s)	67, 164, 188, 218, 241, 293, 403, 548, 626
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	4 cut(s)	68, 357, 525, 627
DpnI	GATC	4 cut(s)	108, 210, 315, 321
DpnII	GATC	4 cut(s)	106, 208, 313, 319
DraIII	CACNNNGTG	1 cut(s)	101
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
Eco130I	CCWWGG	3 cut(s)	16, 307, 485
Eco32I	GATATC	2 cut(s)	13, 38
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	302
EcoRV	GATATC	2 cut(s)	13, 38
EcoT14I	CCWWGG	3 cut(s)	16, 307, 485
EcoT22I	ATGCAT	1 cut(s)	396
ErhI	CCWWGG	3 cut(s)	16, 307, 485
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	7 cut(s)	49, 101, 155, 197, 311, 394, 611
FatI	CATG	7 cut(s)	45, 97, 151, 193, 307, 390, 607
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	189, 404, 516
Fsp4HI	GCNGC	3 cut(s)	189, 404, 516
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	3 cut(s)	189, 404, 516
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	7 cut(s)	49, 101, 155, 197, 311, 394, 611
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	367, 521
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	32, 314, 323
Hpy166II	GTNNAC	2 cut(s)	86, 469
Hpy188I	TCNGA	3 cut(s)	120, 426, 526
Hpy188III	TCNNGA	5 cut(s)	136, 152, 317, 323, 583
Hpy8I	GTNNAC	2 cut(s)	86, 469
HpyAV	CCTTC	2 cut(s)	290, 340
HpyCH4III	ACNGT	3 cut(s)	342, 460, 473
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	6 cut(s)	4, 191, 394, 406, 439, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	4 cut(s)	68, 357, 525, 627
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	7 cut(s)	49, 101, 155, 197, 311, 394, 611
Kzo9I	GATC	4 cut(s)	106, 208, 313, 319
LmnI	GCTCC	2 cut(s)	400, 512
LpnPI	CCDG	9 cut(s)	149, 156, 178, 216, 231, 271, 314, 330, 467
Lsp1109I	GCAGC	3 cut(s)	175, 390, 527
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	20, 302, 446, 661
MalI	GATC	4 cut(s)	108, 210, 315, 321
MboI	GATC	4 cut(s)	106, 208, 313, 319
MboII	GAAGA	2 cut(s)	218, 668
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	30, 390
MluCI	AATT	2 cut(s)	222, 597
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	5 cut(s)	132, 259, 490, 503, 631
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	63, 492
MslI	CAYNNNNRTG	2 cut(s)	557, 612
MspI	CCGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	4 cut(s)	106, 208, 313, 319
NlaIII	CATG	7 cut(s)	49, 101, 155, 197, 311, 394, 611
NmuCI	GTSAC	3 cut(s)	20, 302, 446
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	394, 611
OliI	CACNNNNGTG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	151
PciI	ACATGT	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	190, 405, 517
PleI	GAGTC	1 cut(s)	529
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	214
PscI	ACATGT	1 cut(s)	607
PspCI	CACGTG	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	2 cut(s)	557, 612
SalI	GTCGAC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	63, 492
SatI	GCNGC	3 cut(s)	189, 404, 516
Sau3AI	GATC	4 cut(s)	106, 208, 313, 319
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	30, 390
SetI	ASST	8 cut(s)	69, 143, 190, 216, 250, 405, 550, 668
SmiMI	CAYNNNNRTG	2 cut(s)	557, 612
Sse9I	AATT	2 cut(s)	222, 597
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	3 cut(s)	16, 307, 485
TaaI	ACNGT	3 cut(s)	342, 460, 473
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	9, 85, 109, 184, 365
TasI	AATT	2 cut(s)	222, 597
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	63, 492
Tru9I	TTAA	2 cut(s)	63, 492
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	3 cut(s)	20, 302, 446
TseI	GCWGC	3 cut(s)	188, 403, 515
Tsp45I	GTSAC	3 cut(s)	20, 302, 446
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	597
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	2 cut(s)	394, 611
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.