Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004510.1

Orthogroup ID

OG0007708

Physical Location & Seq

Genomic Coordinates Reverse (-)

34223 .. 38778

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004510.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgcagccagatttggttctttttacaggtgattttggtgaagagaacattggaattgttcgcagcgttgcaaatcttgaatttgctaaagcagttattttgggaaaccatgatgcctggcatacaaaaaagttttcaggaaagacaaaagacggcgttcaacttcagctagactgtctaggcgaggagcatgtagcttacagatgtttggactttgctacggtaaaactgagcattgttggtggacgacctttttctagtgggggaaaccagttatttcgattaaagcttttgtctgcaaggtatggagtccaagacatggatggaagtgctaagagaatctgcaaagcagctttgggtgctccagaggaccatatggtcattattcttgcacacaatggacccacaggtcttggttctaacttggatgacatatgtggaaaagactgggactttggaggtggagatcatggtgatgcagatctagcacaagccctgtccctcctaaaagagtccggcaaaacctgtgttccattggtagtgtttggtcacatgcataaacagctagcaggtggaaatggtcttcggaaaatgatcgtgtggtcggcgcggtctccggcgaccggtgacaggattccggcgaccaatgaccggattccgggaaccggtaaccgaaatccggcgaccgatgactggaatccggaatccggctattattgccccccaaagcagaatgcgcgacctccatacttgaccgcgccaaaggaggtagcggtcccaatgaccggctggctccgacagcgtcgcggcactgagatggttgctctgattgctgtactgctcggccaatcggatctgacagagacagagtttcagtcagattctgaaggcctcgacatcaccaccattagagaagtgaaggaggtttggttttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

312

Amino Acids

33.85

Weight (kDa)

5.92

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58200 AT5G58200
fragaria_vesca	FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01380
malus_domestica	MD02G1011000.v1.1 MD15G1156000.v1.1
prunus_persica	Prupe.7G259100_v2.0.a1
pyrus_communis	pycom02g00990 pycom15g14000
rosa_chinensis	RchiOBHm_Chr2g0086151
rosa_laevigata	RLG00000015748
rosa_multiflora	Rmu_sc0004416.1_g000001 Rmu_sc0004510.1_g000008
rosa_roxburghii	Rroxscaffold_2G00154750
rosa_rugosa	Rorug01G0466200
rosa_samantha	Rh2AG016000 Rh2BG016100 Rh2BG016200 Rh2CG016800 Rh2DG018000
rosa_wichuraiana	Rw2G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
AasI	GACNNNNNNGTC	2 cut(s)	377, 408
Acc36I	ACCTGC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccII	CGCG	4 cut(s)	610, 739, 758, 807
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	4 cut(s)	610, 756, 773, 807
AclWI	GGATC	1 cut(s)	861
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	2 cut(s)	149, 906
AfaI	GTAC	1 cut(s)	837
AgeI	ACCGGT	2 cut(s)	623, 665
AgsI	TTSAA	2 cut(s)	80, 161
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	169, 197, 289, 353, 565
AluI	AGCT	5 cut(s)	169, 197, 289, 353, 565
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	618, 857
AlwI	GGATC	1 cut(s)	861
AlwNI	CAGNNNCTG	1 cut(s)	884
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	2 cut(s)	844, 889
ApeKI	GCWGC	3 cut(s)	4, 63, 350
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AsiGI	ACCGGT	2 cut(s)	623, 665
AspLEI	GCGC	3 cut(s)	610, 739, 760
AspS9I	GGNCC	3 cut(s)	370, 401, 775
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	5 cut(s)	41, 50, 485, 638, 892
AsuNHI	GCTAGC	1 cut(s)	565
AvaII	GGWCC	3 cut(s)	370, 401, 775
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	16, 75, 362
BccI	CCATC	2 cut(s)	317, 811
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	618, 857
BfaI	CTAG	5 cut(s)	170, 179, 258, 485, 566
BfuAI	ACCTGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	4 cut(s)	5, 64, 351, 808
BlsI	GCNGC	4 cut(s)	6, 65, 352, 809
Bme1390I	CCNGG	2 cut(s)	118, 660
Bme18I	GGWCC	3 cut(s)	370, 401, 775
BmgT120I	GGNCC	3 cut(s)	370, 401, 775
BmiI	GGNNCC	4 cut(s)	403, 664, 777, 794
BmrFI	CCNGG	2 cut(s)	118, 660
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	103, 466
BmtI	GCTAGC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	618
BsaWI	WCCGGW	4 cut(s)	623, 651, 665, 700
BsaXI	ACNNNNNCTCC	1 cut(s)	914
Bse118I	RCCGGY	3 cut(s)	623, 665, 785
Bse1I	ACTGG	3 cut(s)	271, 452, 698
Bse8I	GATNNNNATC	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	328, 433
BseJI	GATNNNNATC	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	221, 804
BseNI	ACTGG	3 cut(s)	271, 452, 698
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	16, 75, 362
Bsh1236I	CGCG	4 cut(s)	610, 739, 758, 807
Bsh1285I	CGRYCG	2 cut(s)	624, 687
BshFI	GGCC	2 cut(s)	846, 891
BshTI	ACCGGT	2 cut(s)	623, 665
BsiEI	CGRYCG	2 cut(s)	624, 687
BsiHKAI	GWGCWC	1 cut(s)	364
BslFI	GGGAC	3 cut(s)	464, 484, 761
BsmAI	GTCTC	2 cut(s)	618, 857
BsmFI	GGGAC	3 cut(s)	464, 484, 761
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	846, 891
Bso31I	GGTCTC	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	1 cut(s)	700
Bsp143I	GATC	4 cut(s)	466, 481, 594, 853
BspACI	CCGC	4 cut(s)	610, 756, 773, 807
BspANI	GGCC	2 cut(s)	846, 891
BspCNI	CTCAG	2 cut(s)	222, 805
BspEI	TCCGGA	1 cut(s)	700
BspFNI	CGCG	4 cut(s)	610, 739, 758, 807
BspLI	GGNNCC	4 cut(s)	403, 664, 777, 794
BspMI	ACCTGC	1 cut(s)	560
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	861
BspTNI	GGTCTC	1 cut(s)	618
BsrFI	RCCGGY	3 cut(s)	623, 665, 785
BsrI	ACTGG	3 cut(s)	271, 452, 698
BssAI	RCCGGY	3 cut(s)	623, 665, 785
BssMI	GATC	4 cut(s)	466, 481, 594, 853
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	176, 223
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	567, 791
BstDEI	CTNAG	3 cut(s)	230, 333, 813
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	328, 433
BstFNI	CGCG	4 cut(s)	610, 739, 758, 807
BstHHI	GCGC	3 cut(s)	610, 739, 760
BstKTI	GATC	4 cut(s)	469, 484, 597, 856
BstMAI	GTCTC	2 cut(s)	618, 857
BstMBI	GATC	4 cut(s)	466, 481, 594, 853
BstMCI	CGRYCG	2 cut(s)	624, 687
BstMWI	GCNNNNNNNGC	7 cut(s)	359, 485, 562, 717, 736, 799, 830
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	194, 556
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	116, 658
BstUI	CGCG	4 cut(s)	610, 739, 758, 807
BstV1I	GCAGC	3 cut(s)	16, 75, 362
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	481, 853
BstYI	RGATCY	2 cut(s)	481, 853
BsuRI	GGCC	2 cut(s)	846, 891
BtsCI	GGATG	2 cut(s)	328, 433
BtsIMutI	CAGTG	1 cut(s)	810
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	567, 791
CaiI	CAGNNNCTG	1 cut(s)	884
CfoI	GCGC	3 cut(s)	610, 739, 760
Cfr10I	RCCGGY	3 cut(s)	623, 665, 785
Cfr13I	GGNCC	3 cut(s)	370, 401, 775
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	836
CspAI	ACCGGT	2 cut(s)	623, 665
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	5 cut(s)	110, 191, 319, 470, 553
CviQI	GTAC	1 cut(s)	836
DdeI	CTNAG	3 cut(s)	230, 333, 813
DpnI	GATC	4 cut(s)	468, 483, 596, 855
DpnII	GATC	4 cut(s)	466, 481, 594, 853
DrdI	GACNNNNNNGTC	2 cut(s)	377, 408
DseDI	GACNNNNNNGTC	2 cut(s)	377, 408
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	3 cut(s)	370, 401, 775
Eco57I	CTGAAG	2 cut(s)	149, 906
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	5 cut(s)	113, 194, 322, 473, 556
FaqI	GGGAC	3 cut(s)	464, 484, 761
FatI	CATG	5 cut(s)	109, 190, 318, 469, 552
FauNDI	CATATG	2 cut(s)	375, 434
Fnu4HI	GCNGC	4 cut(s)	5, 64, 351, 808
FokI	GGATG	2 cut(s)	335, 440
Fsp4HI	GCNGC	4 cut(s)	5, 64, 351, 808
FspBI	CTAG	5 cut(s)	170, 179, 258, 485, 566
GlaI	GCGC	3 cut(s)	609, 738, 759
GluI	GCNGC	4 cut(s)	5, 64, 351, 808
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	846, 891
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	3 cut(s)	610, 739, 760
Hin1II	CATG	5 cut(s)	113, 194, 322, 473, 556
Hin6I	GCGC	3 cut(s)	608, 737, 758
HinP1I	GCGC	3 cut(s)	608, 737, 758
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	8 cut(s)	309, 339, 512, 634, 655, 697, 704, 881
HphI	GGTGA	5 cut(s)	41, 50, 485, 638, 892
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	7 cut(s)	588, 797, 828, 853, 858, 880, 886
Hpy188III	TCNNGA	5 cut(s)	77, 138, 365, 701, 936
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	2 cut(s)	881, 913
HpyCH4III	ACNGT	2 cut(s)	176, 223
HpyCH4V	TGCA	7 cut(s)	4, 71, 299, 345, 392, 479, 556
HpyF10VI	GCNNNNNNNGC	7 cut(s)	359, 485, 562, 717, 736, 799, 830
HpyF3I	CTNAG	3 cut(s)	230, 333, 813
Hsp92II	CATG	5 cut(s)	113, 194, 322, 473, 556
HspAI	GCGC	3 cut(s)	608, 737, 758
Kpn2I	TCCGGA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	466, 481, 594, 853
LmnI	GCTCC	3 cut(s)	187, 367, 798
Lsp1109I	GCAGC	3 cut(s)	16, 75, 362
LweI	GCATC	2 cut(s)	103, 466
MaeI	CTAG	5 cut(s)	170, 179, 258, 485, 566
MaeIII	GTNAC	3 cut(s)	548, 626, 668
MalI	GATC	4 cut(s)	468, 483, 596, 855
MboI	GATC	4 cut(s)	466, 481, 594, 853
MboII	GAAGA	2 cut(s)	53, 575
MflI	RGATCY	2 cut(s)	481, 853
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	54, 80
MlyI	GAGTC	2 cut(s)	318, 521
MmeI	TCCRAC	1 cut(s)	820
MnlI	CCTC	8 cut(s)	178, 361, 452, 512, 753, 760, 902, 916
Mph1103I	ATGCAT	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	700
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	474, 815
MspR9I	CCNGG	2 cut(s)	118, 660
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	4 cut(s)	610, 739, 758, 807
MwoI	GCNNNNNNNGC	7 cut(s)	359, 485, 562, 717, 736, 799, 830
NciI	CCSGG	1 cut(s)	660
NdeI	CATATG	2 cut(s)	375, 434
NdeII	GATC	4 cut(s)	466, 481, 594, 853
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	113, 194, 322, 473, 556
NlaIV	GGNNCC	4 cut(s)	403, 664, 777, 794
NmeAIII	GCCGAG	1 cut(s)	822
NmuCI	GTSAC	2 cut(s)	548, 626
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	194, 556
PaqCI	CACCTGC	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	891
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	6 cut(s)	339, 634, 655, 697, 704, 881
PflFI	GACNNNGTC	1 cut(s)	801
PflMI	CCANNNNNTGG	1 cut(s)	319
PfoI	TCCNGGA	1 cut(s)	658
PinAI	ACCGGT	2 cut(s)	623, 665
PkrI	GCNGC	4 cut(s)	6, 65, 352, 809
PleI	GAGTC	2 cut(s)	317, 520
PpsI	GAGTC	2 cut(s)	317, 520
Psp6I	CCWGG	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	403, 664, 777, 794
PspPI	GGNCC	3 cut(s)	370, 401, 775
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	481, 853
PsyI	GACNNNGTC	1 cut(s)	801
RsaI	GTAC	1 cut(s)	837
RsaNI	GTAC	1 cut(s)	836
RseI	CAYNNNNRTG	2 cut(s)	474, 815
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	4 cut(s)	5, 64, 351, 808
Sau3AI	GATC	4 cut(s)	466, 481, 594, 853
Sau96I	GGNCC	3 cut(s)	370, 401, 775
SchI	GAGTC	2 cut(s)	318, 521
ScrFI	CCNGG	2 cut(s)	118, 660
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	103, 466
SinI	GGWCC	3 cut(s)	370, 401, 775
SmiMI	CAYNNNNRTG	2 cut(s)	474, 815
Sse9I	AATT	2 cut(s)	54, 80
SseBI	AGGCCT	1 cut(s)	891
SsiI	CCGC	4 cut(s)	610, 756, 773, 807
SspMI	CTAG	5 cut(s)	170, 179, 258, 485, 566
StuI	AGGCCT	1 cut(s)	891
StyD4I	CCNGG	2 cut(s)	116, 658
TaaI	ACNGT	2 cut(s)	176, 223
TaqI	TCGA	2 cut(s)	280, 894
TaqII	GACCGA	1 cut(s)	701
TasI	AATT	2 cut(s)	54, 80
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	810
TfiI	GAWTC	6 cut(s)	339, 634, 655, 697, 704, 881
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	2 cut(s)	548, 626
TseI	GCWGC	3 cut(s)	4, 63, 350
Tsp45I	GTSAC	2 cut(s)	548, 626
TspRI	CASTG	1 cut(s)	817
Tth111I	GACNNNGTC	1 cut(s)	801
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	3 cut(s)	370, 401, 775
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	2 cut(s)	194, 556
XcmI	CCANNNNNNNNNTGG	2 cut(s)	320, 786
XspI	CTAG	5 cut(s)	170, 179, 258, 485, 566
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.