Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007708

Physical Location & Seq

Genomic Coordinates Reverse (-)

9528318 .. 9529069

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTTCTTGCACATAATGGACCCACAGGTCTTGGTTCTAACATGGATGACATATGTGGAAAAGATTGGGTGTTTGGAGGTGGAGATCATGGTGACCCAGATCTAGCACAAGCCTTGTCCCTCTTAAAAGAAACTGGCAAAATCTGTGCCCCGCTGGTGGTGTTTGGTCACATGCATAAAGAGTTAGCAGATGGAAATGGTCTTCGGAAAATGATTGTGGTTGGAGATGACAACACTATATACCTCAATGGGGCGATTGTTCCTAGGGTTAAGAGACTGAATGTTGAACAAGGCACACCAGAGTCCTGTGGCACCATGCGCGCCTTCACCTTAGTAGAGATCTTGAACGGAACAGTTGATAATATTGTTGAAAGTTGGGTATCAGTTGCCGGCGATATGATCACATTGGAAGAGGAGCACTTCTTGTTCAAAAGTGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

148

Amino Acids

15.76

Weight (kDa)

4.82

Isoelectric Point (pI)

23.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58200 AT5G58200
fragaria_vesca	FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01380
malus_domestica	MD02G1011000.v1.1 MD15G1156000.v1.1
prunus_persica	Prupe.7G259100_v2.0.a1
pyrus_communis	pycom02g00990 pycom15g14000
rosa_chinensis	RchiOBHm_Chr2g0086151
rosa_laevigata	RLG00000015748
rosa_multiflora	Rmu_sc0004416.1_g000001 Rmu_sc0004510.1_g000008
rosa_roxburghii	Rroxscaffold_2G00154750
rosa_rugosa	Rorug01G0466200
rosa_samantha	Rh2AG016000 Rh2BG016100 Rh2BG016200 Rh2CG016800 Rh2DG018000
rosa_wichuraiana	Rw2G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	157, 250
AgsI	TTSAA	4 cut(s)	287, 346, 371, 430
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	268
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	321, 323
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	104, 319
AvaII	GGWCC	1 cut(s)	20
AvrII	CCTAGG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	104, 264
BglII	AGATCT	2 cut(s)	100, 339
BlnI	CCTAGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	22, 313
BpiI	GAAGAC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 250
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	157, 250
BseNI	ACTGG	1 cut(s)	139
BsePI	GCGCGC	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	157, 250
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	151, 420
Bsp143I	GATC	4 cut(s)	85, 100, 339, 399
BspACI	CCGC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	22, 313
BspT107I	GGYRCC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	263
BssHII	GCGCGC	1 cut(s)	319
BssMI	GATC	4 cut(s)	85, 100, 339, 399
BssT1I	CCWWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	321, 391
BstDEI	CTNAG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	321, 323
BstKTI	GATC	4 cut(s)	88, 103, 342, 402
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	85, 100, 339, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	175
BstPI	GGTNACC	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	100, 339
BstYI	RGATCY	2 cut(s)	100, 339
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	321, 391
CfoI	GCGC	2 cut(s)	321, 323
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	4 cut(s)	43, 89, 172, 316
CviJI	RGCY	1 cut(s)	113
CviKI_1	RGCY	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	4 cut(s)	87, 102, 341, 401
DpnII	GATC	4 cut(s)	85, 100, 339, 399
DrdI	GACNNNNNNGTC	1 cut(s)	27
DseDI	GACNNNNNNGTC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	4 cut(s)	46, 92, 175, 319
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	42, 88, 171, 315
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	399
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	2 cut(s)	104, 264
GlaI	GCGC	2 cut(s)	320, 322
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	2 cut(s)	321, 323
Hin1II	CATG	4 cut(s)	46, 92, 175, 319
Hin6I	GCGC	2 cut(s)	319, 321
HinP1I	GCGC	2 cut(s)	319, 321
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	104, 319
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	11, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	46, 92, 175, 319
HspAI	GCGC	2 cut(s)	319, 321
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	85, 100, 339, 399
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	7 cut(s)	12, 111, 120, 140, 312, 319, 403
MaeI	CTAG	2 cut(s)	104, 264
MaeIII	GTNAC	2 cut(s)	92, 167
MalI	GATC	4 cut(s)	87, 102, 341, 401
MboI	GATC	4 cut(s)	85, 100, 339, 399
MboII	GAAGA	2 cut(s)	194, 422
MflI	RGATCY	2 cut(s)	100, 339
MhlI	GDGCHC	2 cut(s)	151, 420
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	71, 131, 254, 406, 431
Mph1103I	ATGCAT	1 cut(s)	177
MroNI	GCCGGC	1 cut(s)	389
MseI	TTAA	3 cut(s)	125, 270, 442
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	318
NaeI	GCCGGC	1 cut(s)	391
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	4 cut(s)	85, 100, 339, 399
NgoMIV	GCCGGC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	46, 92, 175, 319
NlaIV	GGNNCC	2 cut(s)	22, 313
NmuCI	GTSAC	2 cut(s)	92, 167
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	175
PauI	GCGCGC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	22, 313
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	100, 339
PteI	GCGCGC	1 cut(s)	319
SaqAI	TTAA	3 cut(s)	125, 270, 442
Sau3AI	GATC	4 cut(s)	85, 100, 339, 399
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	151, 420
SetI	ASST	5 cut(s)	31, 82, 246, 332, 442
SinI	GGWCC	1 cut(s)	20
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	104, 264
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	125, 270, 442
Tru9I	TTAA	3 cut(s)	125, 270, 442
TseFI	GTSAC	2 cut(s)	92, 167
Tsp45I	GTSAC	2 cut(s)	92, 167
TspGWI	ACGGA	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	20
XceI	RCATGY	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	104, 264
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.