Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004416.1

Orthogroup ID

OG0007708

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3679

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004416.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 634 bp

atgcagccagatttggttctttttacaggtgattttggtgaagagaacattggaattgttcgcagcgttgcaaatcttgaatttgctaaagcagttattttgggaaaccatgatgcctggcatacaaaaaagttttcaggaaagacaaaagacggcgttcaacttcagctagactgtctaggcgaggagcatgtagcttacagatgtttggactttgctacggtaaaactgagcattgttggtggacgacctttttctagtgggggaaaccagttatttcgattaaagcttttgtctgcaaggtatggagtccaagacatggatggaagtgctaagagaatctgcaaagcagctttgggtgctccagaggaccatatggtcattattcttgcacacaatggacccacaggtcttggttctaacttggatgacatatgtggaaaagactgggactttggaggtggagatcatggtgatgcagatctagcacaagccctgtccctcctaaaagagtccggcaaaacctgtgttccattggtagtgtttggtcacatgcataaacagctagcaggtggaaatggtcttcggaaaatgatcgtggttggagctgacaatactatatacctgaatgcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

211

Amino Acids

22.53

Weight (kDa)

6.22

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58200 AT5G58200
fragaria_vesca	FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01320 FvH4_1g01380
malus_domestica	MD02G1011000.v1.1 MD15G1156000.v1.1
prunus_persica	Prupe.7G259100_v2.0.a1
pyrus_communis	pycom02g00990 pycom15g14000
rosa_chinensis	RchiOBHm_Chr2g0086151
rosa_laevigata	RLG00000015748
rosa_multiflora	Rmu_sc0004416.1_g000001 Rmu_sc0004510.1_g000008
rosa_roxburghii	Rroxscaffold_2G00154750
rosa_rugosa	Rorug01G0466200
rosa_samantha	Rh2AG016000 Rh2BG016100 Rh2BG016200 Rh2CG016800 Rh2DG018000
rosa_wichuraiana	Rw2G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
AasI	GACNNNNNNGTC	2 cut(s)	377, 408
Acc36I	ACCTGC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	319, 631
AgsI	TTSAA	2 cut(s)	80, 161
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	6 cut(s)	169, 197, 289, 353, 565, 608
AluI	AGCT	6 cut(s)	169, 197, 289, 353, 565, 608
Alw21I	GWGCWC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	4, 63, 350
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspS9I	GGNCC	2 cut(s)	370, 401
AsuHPI	GGTGA	3 cut(s)	41, 50, 485
AsuNHI	GCTAGC	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	370, 401
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	16, 75, 362
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	118
BfaI	CTAG	5 cut(s)	170, 179, 258, 485, 566
BfuAI	ACCTGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	3 cut(s)	5, 64, 351
BlsI	GCNGC	3 cut(s)	6, 65, 352
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	370, 401
BmgT120I	GGNCC	2 cut(s)	370, 401
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	103, 466
BmtI	GCTAGC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 631
Bse1I	ACTGG	2 cut(s)	271, 452
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	328, 433
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	319, 631
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	271, 452
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	16, 75, 362
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	464, 484
BslI	CCNNNNNNNGG	2 cut(s)	319, 631
BsmFI	GGGAC	2 cut(s)	464, 484
BsmI	GAATGC	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	466, 481, 594
BspACI	CCGC	1 cut(s)	632
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	560
BspOI	GCTAGC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	271, 452
BssMI	GATC	3 cut(s)	466, 481, 594
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	176, 223
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	230, 333
BstF5I	GGATG	2 cut(s)	328, 433
BstKTI	GATC	3 cut(s)	469, 484, 597
BstMBI	GATC	3 cut(s)	466, 481, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 485, 562
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	194, 556
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	16, 75, 362
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	328, 433
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	370, 401
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	5 cut(s)	110, 191, 319, 470, 553
CviJI	RGCY	8 cut(s)	7, 169, 197, 289, 353, 494, 565, 608
CviKI_1	RGCY	8 cut(s)	7, 169, 197, 289, 353, 494, 565, 608
DdeI	CTNAG	2 cut(s)	230, 333
DpnI	GATC	3 cut(s)	468, 483, 596
DpnII	GATC	3 cut(s)	466, 481, 594
DrdI	GACNNNNNNGTC	2 cut(s)	377, 408
DseDI	GACNNNNNNGTC	2 cut(s)	377, 408
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	370, 401
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	5 cut(s)	113, 194, 322, 473, 556
FaqI	GGGAC	2 cut(s)	464, 484
FatI	CATG	5 cut(s)	109, 190, 318, 469, 552
FauNDI	CATATG	2 cut(s)	375, 434
Fnu4HI	GCNGC	3 cut(s)	5, 64, 351
FokI	GGATG	2 cut(s)	335, 440
Fsp4HI	GCNGC	3 cut(s)	5, 64, 351
FspBI	CTAG	5 cut(s)	170, 179, 258, 485, 566
GluI	GCNGC	3 cut(s)	5, 64, 351
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	5 cut(s)	113, 194, 322, 473, 556
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	309, 339, 512
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	3 cut(s)	41, 50, 485
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	3 cut(s)	77, 138, 365
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	176, 223
HpyCH4V	TGCA	7 cut(s)	4, 71, 299, 345, 392, 479, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 485, 562
HpyF3I	CTNAG	2 cut(s)	230, 333
Hsp92II	CATG	5 cut(s)	113, 194, 322, 473, 556
Kzo9I	GATC	3 cut(s)	466, 481, 594
LmnI	GCTCC	3 cut(s)	187, 367, 605
Lsp1109I	GCAGC	3 cut(s)	16, 75, 362
LweI	GCATC	2 cut(s)	103, 466
MaeI	CTAG	5 cut(s)	170, 179, 258, 485, 566
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	468, 483, 596
MboI	GATC	3 cut(s)	466, 481, 594
MboII	GAAGA	2 cut(s)	53, 575
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	54, 80
MlyI	GAGTC	2 cut(s)	318, 521
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	4 cut(s)	178, 361, 452, 512
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	359, 485, 562
NdeI	CATATG	2 cut(s)	375, 434
NdeII	GATC	3 cut(s)	466, 481, 594
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	113, 194, 322, 473, 556
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	194, 556
PaqCI	CACCTGC	1 cut(s)	560
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	6, 65, 352
PleI	GAGTC	2 cut(s)	317, 520
PpsI	GAGTC	2 cut(s)	317, 520
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	370, 401
PsuI	RGATCY	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	3 cut(s)	5, 64, 351
Sau3AI	GATC	3 cut(s)	466, 481, 594
Sau96I	GGNCC	2 cut(s)	370, 401
SchI	GAGTC	2 cut(s)	318, 521
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	103, 466
SinI	GGWCC	2 cut(s)	370, 401
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	2 cut(s)	54, 80
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	5 cut(s)	170, 179, 258, 485, 566
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	176, 223
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	54, 80
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	3 cut(s)	4, 63, 350
Tsp45I	GTSAC	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	370, 401
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	2 cut(s)	194, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	5 cut(s)	170, 179, 258, 485, 566
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.