Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

23670267 .. 23672877

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCAACTACTAGTACTACTACAAAGCTCTCCGTTCTCTGCTGCTCTTTCATTTCATCTCCTCTCGTTGACTCTCCTCCTTCTCTCGCCTTCTTCTCTCCGATTCCACGATTCCTCACTGTCCGAATCGCGACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCCACCAAAATCCGCAAGTCTTCACTCGCCGCCGTGATGTTTCCGGAAAATTCGGTTTTATCAGATGTCTGCGCGTTTGGAGTCACTAGCATCGTTGCGTTCTCGTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCATCTTCGACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTGCTGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTCGCATCTCTTGTACCTGGACTCAATATAGTAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACAATCAAGTCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGGCCGCTTTACTATGTACTGTCAATCACATCAGCCTGCATCTACTATTGGAAATCATCCCCAATCGCGATTGCGGTGATATGCAACCTTTGCGCAGGAGATGGTATGGCTGACATTGTGGGTCGGCGGTTTGGAACAGAGAAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCCGGGTTTCTAGCATCTGTTGCGTATATGTACTACTTTGCTTCATTTGGTTACATCGAGGATAGCGGGGGAATGATTCTTCGTTTCCTCGTCATCTCTATAGCATCAGCTCTTGTGGAATCACTCCCAATAAGCACCGACATTGACGACAATCTCACCATTTCCTTAACCTCTGCCTTGGCCGGATTCTTACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.22

Weight (kDa)

9.11

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	622
AccII	CGCG	3 cut(s)	131, 236, 596
AccIII	TCCGGA	2 cut(s)	205, 324
AciI	CCGC	8 cut(s)	175, 192, 374, 533, 602, 655, 723, 789
AcoI	YGGCCR	4 cut(s)	162, 371, 717, 903
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	5 cut(s)	16, 420, 467, 546, 755
AfiI	CCNNNNNNNGG	1 cut(s)	726
AflII	CTTAAG	1 cut(s)	524
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	6 cut(s)	28, 138, 150, 331, 673, 833
AluI	AGCT	6 cut(s)	28, 138, 150, 331, 673, 833
Alw21I	GWGCWC	2 cut(s)	152, 403
Aor13HI	TCCGGA	2 cut(s)	205, 324
AoxI	GGCC	5 cut(s)	162, 371, 530, 717, 903
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	236, 623
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	2 cut(s)	616, 871
BalI	TGGCCA	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	662, 694
BauI	CACGAG	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	152, 403
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	727
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	6 cut(s)	12, 135, 153, 249, 353, 734
BfmI	CTRYAG	1 cut(s)	822
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	4 cut(s)	43, 192, 374, 533
BlsI	GCNGC	4 cut(s)	44, 193, 375, 534
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	423, 727
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	2 cut(s)	423, 727
BmsI	GCATC	7 cut(s)	261, 312, 419, 432, 576, 746, 836
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	271, 394, 900
BsaWI	WCCGGW	2 cut(s)	205, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	726
BseAI	TCCGGA	2 cut(s)	205, 324
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	271, 394, 900
BseGI	GGATG	3 cut(s)	321, 447, 584
BseLI	CCNNNNNNNGG	1 cut(s)	726
BseRI	GAGGAG	2 cut(s)	51, 66
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	451
Bsh1236I	CGCG	3 cut(s)	131, 236, 596
BshFI	GGCC	5 cut(s)	164, 373, 532, 719, 905
BsiHKAI	GWGCWC	2 cut(s)	152, 403
BsiSI	CCGG	5 cut(s)	161, 206, 325, 726, 906
BslI	CCNNNNNNNGG	1 cut(s)	726
BsnI	GGCC	5 cut(s)	164, 373, 532, 719, 905
Bsp1286I	GDGCHC	2 cut(s)	152, 403
Bsp13I	TCCGGA	2 cut(s)	205, 324
Bsp143I	GATC	2 cut(s)	143, 508
Bsp68I	TCGCGA	2 cut(s)	131, 596
BspACI	CCGC	8 cut(s)	175, 192, 374, 533, 602, 655, 723, 789
BspANI	GGCC	5 cut(s)	164, 373, 532, 719, 905
BspEI	TCCGGA	2 cut(s)	205, 324
BspFNI	CGCG	3 cut(s)	131, 236, 596
BspLI	GGNNCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	271, 394, 900
BssMI	GATC	2 cut(s)	143, 508
BssSI	CACGAG	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	394, 900
Bst2BI	CACGAG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	121, 549
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	2 cut(s)	618, 743
BstC8I	GCNNGC	2 cut(s)	371, 565
BstF5I	GGATG	3 cut(s)	321, 447, 584
BstFNI	CGCG	3 cut(s)	131, 236, 596
BstHHI	GCGC	2 cut(s)	236, 623
BstKTI	GATC	2 cut(s)	146, 511
BstMBI	GATC	2 cut(s)	143, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	300, 370, 407, 618, 743
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	421, 725
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	3 cut(s)	131, 236, 596
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	174
BsuRI	GGCC	5 cut(s)	164, 373, 532, 719, 905
BtsCI	GGATG	3 cut(s)	321, 447, 584
BtsIMutI	CAGTG	1 cut(s)	117
BtuMI	TCGCGA	2 cut(s)	131, 596
Cac8I	GCNNGC	2 cut(s)	371, 565
CfoI	GCGC	2 cut(s)	236, 623
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	5 cut(s)	15, 419, 466, 545, 754
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	5 cut(s)	15, 419, 466, 545, 754
DpnI	GATC	2 cut(s)	145, 510
DpnII	GATC	2 cut(s)	143, 508
EaeI	YGGCCR	4 cut(s)	162, 371, 717, 903
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	394, 900
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	394, 900
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	2 cut(s)	394, 900
FaeI	CATG	1 cut(s)	506
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	1 cut(s)	502
FauI	CCCGC	1 cut(s)	782
Fnu4HI	GCNGC	4 cut(s)	43, 192, 374, 533
FokI	GGATG	3 cut(s)	308, 454, 571
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	43, 192, 374, 533
FspBI	CTAG	6 cut(s)	12, 135, 153, 249, 353, 734
FspI	TGCGCA	1 cut(s)	622
GlaI	GCGC	2 cut(s)	235, 622
GluI	GCNGC	4 cut(s)	43, 192, 374, 533
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	5 cut(s)	164, 373, 532, 719, 905
HapII	CCGG	5 cut(s)	161, 206, 325, 726, 906
HhaI	GCGC	2 cut(s)	236, 623
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	234, 621
HinP1I	GCGC	2 cut(s)	234, 621
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	329, 671
HpaII	CCGG	5 cut(s)	161, 206, 325, 726, 906
HphI	GGTGA	2 cut(s)	616, 871
Hpy166II	GTNNAC	2 cut(s)	70, 466
Hpy188I	TCNGA	3 cut(s)	102, 125, 226
Hpy188III	TCNNGA	5 cut(s)	130, 206, 325, 387, 595
Hpy8I	GTNNAC	2 cut(s)	70, 466
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	90, 100, 470
HpyCH4III	ACNGT	2 cut(s)	121, 549
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	337, 567, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	300, 370, 407, 618, 743
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	234, 621
Kpn2I	TCCGGA	2 cut(s)	205, 324
Kzo9I	GATC	2 cut(s)	143, 508
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	7 cut(s)	261, 312, 419, 432, 576, 746, 836
MaeI	CTAG	6 cut(s)	12, 135, 153, 249, 353, 734
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	244, 773
MalI	GATC	2 cut(s)	145, 510
MboI	GATC	2 cut(s)	143, 508
MboII	GAAGA	5 cut(s)	85, 174, 298, 794, 910
MhlI	GDGCHC	2 cut(s)	152, 403
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	3 cut(s)	65, 252, 420
MnlI	CCTC	7 cut(s)	72, 87, 125, 281, 775, 821, 904
Mox20I	TGGCCA	1 cut(s)	719
MroI	TCCGGA	2 cut(s)	205, 324
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	2 cut(s)	525, 890
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	5 cut(s)	161, 206, 325, 726, 906
MspR9I	CCNGG	2 cut(s)	423, 727
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	3 cut(s)	131, 236, 596
MwoI	GCNNNNNNNGC	5 cut(s)	300, 370, 407, 618, 743
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	2 cut(s)	143, 508
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	244
NruI	TCGCGA	2 cut(s)	131, 596
NsbI	TGCGCA	1 cut(s)	622
PfeI	GAWTC	7 cut(s)	103, 111, 126, 390, 799, 842, 909
PkrI	GCNGC	4 cut(s)	44, 193, 375, 534
PleI	GAGTC	3 cut(s)	65, 251, 420
PpsI	GAGTC	3 cut(s)	65, 251, 420
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	530
RruI	TCGCGA	2 cut(s)	131, 596
RsaI	GTAC	5 cut(s)	16, 420, 467, 546, 755
RsaNI	GTAC	5 cut(s)	15, 419, 466, 545, 754
RseI	CAYNNNNRTG	1 cut(s)	713
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	525, 890
SatI	GCNGC	4 cut(s)	43, 192, 374, 533
Sau3AI	GATC	2 cut(s)	143, 508
Sau96I	GGNCC	1 cut(s)	530
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	3 cut(s)	65, 252, 420
ScrFI	CCNGG	2 cut(s)	423, 727
SduI	GDGCHC	2 cut(s)	152, 403
SfaNI	GCATC	7 cut(s)	261, 312, 419, 432, 576, 746, 836
SfcI	CTRYAG	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	8 cut(s)	175, 192, 374, 533, 602, 655, 723, 789
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	6 cut(s)	12, 135, 153, 249, 353, 734
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	421, 725
StyI	CCWWGG	2 cut(s)	394, 900
TaaI	ACNGT	2 cut(s)	121, 549
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	3 cut(s)	146, 309, 780
TasI	AATT	1 cut(s)	211
TatI	WGTACW	3 cut(s)	14, 544, 753
TauI	GCSGC	3 cut(s)	194, 376, 535
TfiI	GAWTC	7 cut(s)	103, 111, 126, 390, 799, 842, 909
Tru1I	TTAA	2 cut(s)	525, 890
Tru9I	TTAA	2 cut(s)	525, 890
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	40, 45, 756
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	6 cut(s)	12, 135, 153, 249, 353, 734
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.