Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

3714493 .. 3717782

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCACTCTTGCCGCGCCTTAGATCCAATAGGCATAGGCACACCATGTTCGTTTCCGTGCCATGTAGGACACCGACCACGACCGTCTTCTACCTTTGGACTTGGTTTTCTTCTTCTCAGTCCCAAATCAATCTCAGACATTACCTCCTACTCTCTTCTCGCTGGCACACTCAGATACCCACTAACAACAACCACCATCAAGCATCGGATTCGTCGCCACCAAGTCACGTCAGCTCCCGCCACTATGCTTCCTCAAAACCCGGTCGTCGCTGATATTTGCGCCACCTTCATTGCCGGTGGTGTTGCTCTGTTCTTCCTTTTGTTGTGGGAAGAGACCGCCAAACGTGGGTTCTTCGACCAGAAACTCAATAGAAAGTTTGTGCATGTAAGCATTGGCCTAGTTTTCATGCTTTGCTGGCCGCTATTCAGTTCTGGCCTTCAAGGAGCATTTTTAGCATCTCTTACTCCAGGCATCAATATTTTCCGTATGCTTCTATTGGGACTCGGTATATGGAAAGATGAAGCAACAGTGAAATCAATAAGCAGATCTGGAGACTACAGGGAACTTCTTAAGGGGCCACTGTACTATGCCACGACAATAACTTTGGCTTGTATAATCTATTGGAGAACTTCCCCCATTGCAATTGCTCTTATATGCAATCTGTGTGCTGGAGATGGTTTAGCAGACATTGTTGGTAGGCGTTTTGGTACTCGGAAAATTCCATACAACAGAAACAAATCCATAGTTGGTAGTGTTGCAATGGCATCTGCTGGTTTTTTAACATCTATCGGGTATATGCACTATTTCTCCAGATTTGGATTTGTTCAGGAGAGTTGGGATATGGTTTTGGGTTTCTTGGTTGTGTCTCTTGCCTCAGCACTGGTAGAATCACTCCCGATAAGCACTGACGTTGATGACAACCTAACAGTTCCACTTACTTCTATATTAGTCGGCGGTTTGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.15

Weight (kDa)

9.35

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	5 cut(s)	13, 237, 336, 419, 954
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	717
AfaI	GTAC	2 cut(s)	584, 709
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	3 cut(s)	326, 546, 870
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	4 cut(s)	394, 416, 433, 575
ApoI	RAATTY	1 cut(s)	717
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AspLEI	GCGC	2 cut(s)	17, 281
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	874
BccI	CCATC	2 cut(s)	203, 668
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	3 cut(s)	326, 546, 870
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	569
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	2 cut(s)	13, 419
BlsI	GCNGC	2 cut(s)	14, 420
Bme1390I	CCNGG	2 cut(s)	260, 468
BmgBI	CACGTC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	260, 468
BmsI	GCATC	4 cut(s)	211, 464, 480, 773
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	4 cut(s)	450, 570, 690, 793
Bpu10I	CCTNAGC	1 cut(s)	874
BpuMI	CCSGG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 217, 247, 791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	885
Bse3DI	GCAATG	3 cut(s)	288, 636, 765
BseBI	CCWGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	3 cut(s)	288, 636, 765
BseMII	CTCAG	4 cut(s)	130, 147, 184, 888
BseNI	ACTGG	1 cut(s)	885
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	2 cut(s)	83, 264
BshFI	GGCC	4 cut(s)	396, 418, 435, 577
BsiEI	CGRYCG	2 cut(s)	83, 264
BsiSI	CCGG	2 cut(s)	260, 294
BslFI	GGGAC	2 cut(s)	105, 513
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	3 cut(s)	326, 546, 870
BsmFI	GGGAC	2 cut(s)	105, 513
BsnI	GGCC	4 cut(s)	396, 418, 435, 577
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	22, 545
BspACI	CCGC	5 cut(s)	13, 237, 336, 419, 954
BspANI	GGCC	4 cut(s)	396, 418, 435, 577
BspCNI	CTCAG	4 cut(s)	129, 146, 183, 887
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	3 cut(s)	288, 636, 765
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	885
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	2 cut(s)	22, 545
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	84, 529, 582, 928
Bst6I	CTCTTC	2 cut(s)	159, 324
BstAFI	CTTAAG	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	163, 416
BstDEI	CTNAG	5 cut(s)	19, 116, 133, 170, 874
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	17, 281
BstKTI	GATC	2 cut(s)	25, 548
BstMAI	GTCTC	3 cut(s)	326, 546, 870
BstMBI	GATC	2 cut(s)	22, 545
BstMCI	CGRYCG	2 cut(s)	83, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 452
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	258, 466
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	22, 545
BstYI	RGATCY	2 cut(s)	22, 545
BsuRI	GGCC	4 cut(s)	396, 418, 435, 577
BtrI	CACGTC	1 cut(s)	228
BtsIMutI	CAGTG	4 cut(s)	534, 578, 878, 903
Cac8I	GCNNGC	2 cut(s)	163, 416
CfoI	GCGC	2 cut(s)	17, 281
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	583, 708
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	4 cut(s)	45, 62, 383, 406
CviJI	RGCY	6 cut(s)	233, 396, 418, 435, 577, 608
CviKI_1	RGCY	6 cut(s)	233, 396, 418, 435, 577, 608
CviQI	GTAC	2 cut(s)	583, 708
DdeI	CTNAG	5 cut(s)	19, 116, 133, 170, 874
DpnI	GATC	2 cut(s)	24, 547
DpnII	GATC	2 cut(s)	22, 545
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	159, 324
EarI	CTCTTC	2 cut(s)	159, 324
Eco31I	GGTCTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	466
FaeI	CATG	4 cut(s)	48, 65, 386, 409
FaqI	GGGAC	2 cut(s)	105, 513
FatI	CATG	4 cut(s)	44, 61, 382, 405
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	13, 419
Fsp4HI	GCNGC	2 cut(s)	13, 419
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	16, 280
GluI	GCNGC	2 cut(s)	13, 419
GsuI	CTGGAG	4 cut(s)	450, 570, 690, 793
HaeIII	GGCC	4 cut(s)	396, 418, 435, 577
HapII	CCGG	2 cut(s)	260, 294
HhaI	GCGC	2 cut(s)	17, 281
Hin1II	CATG	4 cut(s)	48, 65, 386, 409
Hin6I	GCGC	2 cut(s)	15, 279
HinP1I	GCGC	2 cut(s)	15, 279
HinfI	GANTC	3 cut(s)	208, 501, 887
HpaII	CCGG	2 cut(s)	260, 294
Hpy188I	TCNGA	5 cut(s)	136, 173, 207, 714, 968
Hpy188III	TCNNGA	4 cut(s)	549, 810, 827, 895
Hpy99I	CGWCG	2 cut(s)	216, 269
HpyAV	CCTTC	2 cut(s)	295, 446
HpyCH4III	ACNGT	4 cut(s)	84, 529, 582, 928
HpyCH4IV	ACGT	3 cut(s)	227, 343, 909
HpyCH4V	TGCA	6 cut(s)	4, 382, 641, 657, 758, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 452
HpyF3I	CTNAG	5 cut(s)	19, 116, 133, 170, 874
HpySE526I	ACGT	3 cut(s)	227, 343, 909
Hsp92II	CATG	4 cut(s)	48, 65, 386, 409
HspAI	GCGC	2 cut(s)	15, 279
Kzo9I	GATC	2 cut(s)	22, 545
LmnI	GCTCC	2 cut(s)	238, 443
LweI	GCATC	4 cut(s)	211, 464, 480, 773
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	3 cut(s)	227, 343, 909
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	24, 547
MboI	GATC	2 cut(s)	22, 545
MboII	GAAGA	7 cut(s)	78, 101, 104, 146, 304, 341, 343
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	2 cut(s)	22, 545
MluCI	AATT	2 cut(s)	642, 717
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	154, 261, 883
MseI	TTAA	2 cut(s)	570, 779
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	2 cut(s)	260, 294
MspR9I	CCNGG	2 cut(s)	260, 468
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	415, 452
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	22, 545
NlaIII	CATG	4 cut(s)	48, 65, 386, 409
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	208, 887
PkrI	GCNGC	2 cut(s)	14, 420
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	22, 545
RsaI	GTAC	2 cut(s)	584, 709
RsaNI	GTAC	2 cut(s)	583, 708
SaqAI	TTAA	2 cut(s)	570, 779
SatI	GCNGC	2 cut(s)	13, 419
Sau3AI	GATC	2 cut(s)	22, 545
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	260, 468
SetI	ASST	8 cut(s)	95, 146, 230, 235, 287, 346, 912, 924
SfaNI	GCATC	4 cut(s)	211, 464, 480, 773
SfcI	CTRYAG	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	642, 717
SsiI	CCGC	5 cut(s)	13, 237, 336, 419, 954
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	258, 466
TaaI	ACNGT	4 cut(s)	84, 529, 582, 928
TaiI	ACGT	3 cut(s)	230, 346, 912
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	642, 717
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	2 cut(s)	15, 421
TfiI	GAWTC	2 cut(s)	208, 887
Tru1I	TTAA	2 cut(s)	570, 779
Tru9I	TTAA	2 cut(s)	570, 779
TscAI	CASTG	4 cut(s)	534, 585, 885, 910
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	277, 394, 534
TspGWI	ACGGA	2 cut(s)	45, 473
TspRI	CASTG	4 cut(s)	534, 585, 885, 910
Vha464I	CTTAAG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	717
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.