Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

5078669 .. 5082071

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1062900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCACTCCTGCCTTGCCATAGAAGGCATAACCAGGCCAAGTTCCTTCCTTCCTCTGCCAGGTAGGCCGCCTTCCAAGTTCGTCTTCTACGTCCAGACTCGGTCTTCTTCTTCCCAAATCAATTTCAGACACTTCCAACCTCTCTCTTCTCGCTGGCTCACTCAGATTCCCACTCACCACAACAATCTCCAAGCGTCGGGCCGCCGCCAACTGACGTCAGCTCCCGCCACTATGCTTCCAGAATACCCTGTGGTTGCTGATATTTGCGCCGCCTTCATTGCAGGCGGCGTTGCTCTTTTCTTCCTGCTGTTGTGGGAAGAAACCGCCAAGCGTGGGATCTTCGACCAGAAACTCAATAGAAAGCTTGTGCACGTAAGCATTGGCCTAGTTTTCATGCTTTGCTGGCCACTGTTCAGTTCTGGCCTTCGAGGAGCATTTTTAGCATGTCTTACTCCAGGCCTCAATATCTTCCGAATGCTTCTATTGGGACTCGGAATATGGAAAGATGAAGCCACAGTGAAATCAATGAGCAGATACGGAGACTACAGGGAACTTCTTAAGGGACCACTGTACTATGCCACGACAATAACTTTGGCTTGTCTAATCTATTGGAGAACTTCTCCTATTGCAATTGCTCTTATATGCAATTTGTGCGCTGGAGATGGTTTAGCTGACATTGTTGGTAGGCGGTTTGGTACTCGGAAAATTCCATACAACAGAAGCAAATCTATAGCCGGTAGTGTTGCAATGGCATCTGCTGGTTTTTTAACATCTATCGGGTACATGCACTATTTCTCCAGCTTCGGGTTTGTTCAGGAAAGTTGGGGCATGGTTTTGGGTTTCTTGGTTGTGTCTCTTGCCTCGGCACTGGTAGAATCTCTTCCCATAAGCACTGAGCTTGACGACAACCTAACAGTTTCACTTACTTCTGTGTTAGTTGGCAGTTTGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.97

Weight (kDa)

9.41

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AciI	CCGC	8 cut(s)	68, 202, 205, 225, 270, 285, 324, 688
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	572, 697, 782
AfiI	CCNNNNNNNGG	4 cut(s)	59, 196, 333, 804
AflII	CTTAAG	1 cut(s)	557
AjnI	CCWGG	3 cut(s)	32, 58, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	5 cut(s)	221, 364, 671, 801, 898
AluI	AGCT	5 cut(s)	221, 364, 671, 801, 898
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	534, 858
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	7 cut(s)	35, 65, 199, 382, 404, 421, 457
ApaLI	GTGCAC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	705
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
Asp700I	GAANNNNTTC	1 cut(s)	879
AspLEI	GCGC	2 cut(s)	269, 656
AspS9I	GGNCC	2 cut(s)	199, 563
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	406
BarI	GAAGNNNNNNTAC	4 cut(s)	55, 87, 864, 896
BbsI	GAAGAC	2 cut(s)	76, 96
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	1 cut(s)	656
BciT130I	CCWGG	3 cut(s)	34, 60, 456
BcoDI	GTCTC	2 cut(s)	534, 858
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	544, 729
BfrI	CTTAAG	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	5 cut(s)	68, 202, 205, 270, 286
BlsI	GCNGC	5 cut(s)	69, 203, 206, 271, 287
Bme1390I	CCNGG	3 cut(s)	34, 60, 456
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	199, 563
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	3 cut(s)	34, 60, 456
BmsI	GCATC	1 cut(s)	761
BpiI	GAAGAC	2 cut(s)	76, 96
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	3 cut(s)	438, 678, 781
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	861
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 779, 809
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 196, 333, 804
Bse118I	RCCGGY	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	873
Bse3DI	GCAATG	2 cut(s)	276, 753
BseBI	CCWGG	3 cut(s)	34, 60, 456
BseDI	CCNNGG	1 cut(s)	861
BseLI	CCNNNNNNNGG	4 cut(s)	59, 196, 333, 804
BseMI	GCAATG	2 cut(s)	276, 753
BseMII	CTCAG	2 cut(s)	176, 885
BseNI	ACTGG	1 cut(s)	873
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	372
BshFI	GGCC	7 cut(s)	37, 67, 201, 384, 406, 423, 459
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	2 cut(s)	501, 576
BslI	CCNNNNNNNGG	4 cut(s)	59, 196, 333, 804
BsmAI	GTCTC	2 cut(s)	534, 858
BsmFI	GGGAC	2 cut(s)	501, 576
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	7 cut(s)	37, 67, 201, 384, 406, 423, 459
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	8 cut(s)	68, 202, 205, 225, 270, 285, 324, 688
BspANI	GGCC	7 cut(s)	37, 67, 201, 384, 406, 423, 459
BspCNI	CTCAG	2 cut(s)	175, 886
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	276, 753
BsrFI	RCCGGY	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	734
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	34, 60, 456
Bst4CI	ACNGT	4 cut(s)	411, 517, 570, 916
Bst6I	CTCTTC	2 cut(s)	151, 885
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	155, 283, 404
BstDEI	CTNAG	2 cut(s)	162, 894
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	269, 656
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	534, 858
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 278, 403, 440, 651
BstNI	CCWGG	3 cut(s)	34, 60, 456
BstNSI	RCATGY	2 cut(s)	447, 787
BstSCI	CCNGG	3 cut(s)	32, 58, 454
BstSFI	CTRYAG	2 cut(s)	544, 729
BstSLI	GKGCMC	1 cut(s)	372
BstV2I	GAAGAC	2 cut(s)	76, 96
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	7 cut(s)	37, 67, 201, 384, 406, 423, 459
BtsIMutI	CAGTG	5 cut(s)	407, 522, 566, 866, 891
Cac8I	GCNNGC	3 cut(s)	155, 283, 404
CfoI	GCGC	2 cut(s)	269, 656
Cfr10I	RCCGGY	1 cut(s)	734
Cfr13I	GGNCC	2 cut(s)	199, 563
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	571, 696, 781
CviAII	CATG	4 cut(s)	394, 444, 784, 829
CviQI	GTAC	3 cut(s)	571, 696, 781
DdeI	CTNAG	2 cut(s)	162, 894
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	151, 885
EarI	CTCTTC	2 cut(s)	151, 885
Eco147I	AGGCCT	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRII	CCWGG	3 cut(s)	32, 58, 454
FaeI	CATG	4 cut(s)	397, 447, 787, 832
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	2 cut(s)	501, 576
FatI	CATG	4 cut(s)	393, 443, 783, 828
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	5 cut(s)	68, 202, 205, 270, 286
Fsp4HI	GCNGC	5 cut(s)	68, 202, 205, 270, 286
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	268, 655
GluI	GCNGC	5 cut(s)	68, 202, 205, 270, 286
GsuI	CTGGAG	3 cut(s)	438, 678, 781
HaeIII	GGCC	7 cut(s)	37, 67, 201, 384, 406, 423, 459
HapII	CCGG	1 cut(s)	735
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	269, 656
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	397, 447, 787, 832
Hin6I	GCGC	2 cut(s)	267, 654
HinP1I	GCGC	2 cut(s)	267, 654
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	97, 166, 489, 875
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	6 cut(s)	128, 165, 473, 494, 702, 956
Hpy188III	TCNNGA	3 cut(s)	94, 239, 815
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	6 cut(s)	17, 55, 59, 81, 283, 434
HpyCH4III	ACNGT	4 cut(s)	411, 517, 570, 916
HpyCH4IV	ACGT	3 cut(s)	90, 215, 372
HpyCH4V	TGCA	7 cut(s)	4, 281, 370, 629, 645, 746, 787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 278, 403, 440, 651
HpyF3I	CTNAG	2 cut(s)	162, 894
HpySE526I	ACGT	3 cut(s)	90, 215, 372
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	397, 447, 787, 832
HspAI	GCGC	2 cut(s)	267, 654
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	226, 431
LweI	GCATC	1 cut(s)	761
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	3 cut(s)	90, 215, 372
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	4 cut(s)	121, 630, 646, 705
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	91, 483
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	63, 150, 422, 470, 871
Mox20I	TGGCCA	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	2 cut(s)	558, 767
Msp20I	TGGCCA	1 cut(s)	406
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	3 cut(s)	34, 60, 456
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	3 cut(s)	34, 60, 456
MwoI	GCNNNNNNNGC	5 cut(s)	64, 278, 403, 440, 651
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	4 cut(s)	397, 447, 787, 832
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	1 cut(s)	842
NspI	RCATGY	2 cut(s)	447, 787
PceI	AGGCCT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	166, 875
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	69, 203, 206, 271, 287
PleI	GAGTC	2 cut(s)	91, 483
PpsI	GAGTC	2 cut(s)	91, 483
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	32, 58, 454
PspGI	CCWGG	3 cut(s)	32, 58, 454
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	199, 563
PsuI	RGATCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	100
RsaI	GTAC	3 cut(s)	572, 697, 782
RsaNI	GTAC	3 cut(s)	571, 696, 781
SaqAI	TTAA	2 cut(s)	558, 767
SatI	GCNGC	5 cut(s)	68, 202, 205, 270, 286
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	199, 563
SchI	GAGTC	2 cut(s)	91, 483
ScrFI	CCNGG	3 cut(s)	34, 60, 456
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	2 cut(s)	544, 729
SinI	GGWCC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	121, 630, 646, 705
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	8 cut(s)	68, 202, 205, 225, 270, 285, 324, 688
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	32, 58, 454
TaaI	ACNGT	4 cut(s)	411, 517, 570, 916
TaiI	ACGT	3 cut(s)	93, 218, 375
TaqI	TCGA	2 cut(s)	342, 427
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	121, 630, 646, 705
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	5 cut(s)	70, 204, 207, 272, 288
TfiI	GAWTC	2 cut(s)	166, 875
Tru1I	TTAA	2 cut(s)	558, 767
Tru9I	TTAA	2 cut(s)	558, 767
TscAI	CASTG	5 cut(s)	414, 522, 573, 873, 898
TspDTI	ATGAA	3 cut(s)	265, 382, 522
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	5 cut(s)	414, 522, 573, 873, 898
Tth111I	GACNNNGTC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	563
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	2 cut(s)	447, 787
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.