Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Reverse (-)

33382790 .. 33385793

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCACCCCTGCCGGGCCTTATATCCAGCCAGACTACCTACCCCATGTTCCCTGCTCCCTCAGTTTGGCCATTCTCCACCGCTCACTTACTTTACCTCTACTCTTCTTTGCCTTCGTCTCACTCCAGCTTCAATTCCAGACTCTCTCCCTGCTGCCACTCTCAGATACCCAATCACTGACCTTCGTGTTCCTCGCCGCCGACGAGTGACGTCAGCTCCCGCCGCTATGCTTCCGGAAAACGCGGTCGCCGCTGATATCTGCGCCACCGCCATTTCCGGTGGTGTGGCTACTTTCTTTCTTCTGTTGTGGGAACAAACCGCCAAACGCGGGGTCTTCGATCAGAAACTCAACAGGAAGCTAGTGCATATCAGCATTGGCCTTGTTTTTATGCTTTGCTGGCCGCTATTCAGTTCGGGCTACCAAGGAGCACTTTTAGCATCTCTTATTCCAGGCCTTAATATCATACGAATGCTTCTACTGGGACTTGGAATAATGAAAGATGAAGCAACAGTGAAGTCGATGAGCAGATATAATGACTATAGGGAACTTCTCAAGGGACCACTCTACTACGCCACAGCCATAACTTGGGCTTGTGTAGTCTATTATAGAACTTCCCCTGTTGCAATTGCATTAATATGCAACCTGTGTGCTGGAGATGGGTTAGCAGACGTTGTTGGTAGGCGTTTTGGTACCCAAAAAATACCATATAACAGAAACAAATCTATAGCTGGTAGTGTGGCGATGGCATCTGCTGGTTTTCTATCATCTATTGGGTATATGTACTATTTCTCTAAGTTTGGATTTGTTGACAAGAGCTGGGACATGGTTTTGGGTTTTTTGGTTGTGTCTCTTGCTTCAGCACTGGTGGAATCACTTCCCATAAGCACCGAGCTTGATGACAACCTAACAGTTCCACTTACTTCTATACTAGTTGGTAGTTTTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

34.51

Weight (kDa)

9.27

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
Acc65I	GGTACC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	82
AccII	CGCG	2 cut(s)	242, 327
AccIII	TCCGGA	1 cut(s)	232
AcoI	YGGCCR	2 cut(s)	67, 398
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	2 cut(s)	691, 782
AfiI	CCNNNNNNNGG	4 cut(s)	13, 65, 327, 585
AgsI	TTSAA	1 cut(s)	132
AhlI	ACTAGT	1 cut(s)	928
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	128, 215, 358, 728, 816, 892
AluI	AGCT	6 cut(s)	128, 215, 358, 728, 816, 892
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	122, 852
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	5 cut(s)	15, 67, 376, 398, 451
ApeKI	GCWGC	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AseI	ATTAAT	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	873
Asp718I	GGTACC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	15, 557
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	650, 736
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	122, 852
BcuI	ACTAGT	1 cut(s)	928
BfaI	CTAG	2 cut(s)	359, 929
BfmI	CTRYAG	2 cut(s)	538, 723
BisI	GCNGC	5 cut(s)	153, 196, 222, 249, 401
BlsI	GCNGC	5 cut(s)	154, 197, 223, 250, 402
Bme1390I	CCNGG	2 cut(s)	14, 450
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	15, 557
BmiI	GGNNCC	2 cut(s)	558, 691
BmrFI	CCNGG	2 cut(s)	14, 450
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	446, 755
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	108, 672
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	2 cut(s)	232, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 65, 327, 585
Bse1I	ACTGG	2 cut(s)	483, 867
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	421
BseLI	CCNNNNNNNGG	4 cut(s)	13, 65, 327, 585
BseMII	CTCAG	2 cut(s)	74, 175
BseNI	ACTGG	2 cut(s)	483, 867
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	816
Bsh1236I	CGCG	2 cut(s)	242, 327
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	5 cut(s)	17, 69, 378, 400, 453
BshNI	GGYRCC	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	13, 233, 276
BslFI	GGGAC	3 cut(s)	495, 570, 833
BslI	CCNNNNNNNGG	4 cut(s)	13, 65, 327, 585
BsmAI	GTCTC	2 cut(s)	122, 852
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	3 cut(s)	495, 570, 833
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	5 cut(s)	17, 69, 378, 400, 453
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	5 cut(s)	17, 69, 378, 400, 453
BspCNI	CTCAG	2 cut(s)	73, 174
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	242, 327
BspLI	GGNNCC	2 cut(s)	558, 691
BspT107I	GGYRCC	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	483, 867
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	511, 910
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	3 cut(s)	60, 161, 792
BstFNI	CGCG	2 cut(s)	242, 327
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	122, 852
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 248, 397, 434
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	12, 448
BstSFI	CTRYAG	2 cut(s)	538, 723
BstUI	CGCG	2 cut(s)	242, 327
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	325
BsuRI	GGCC	5 cut(s)	17, 69, 378, 400, 453
BtgZI	GCGATG	1 cut(s)	755
BtsIMutI	CAGTG	3 cut(s)	174, 516, 860
Cac8I	GCNNGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	15, 557
Csp6I	GTAC	2 cut(s)	690, 781
CviAII	CATG	2 cut(s)	45, 823
CviQI	GTAC	2 cut(s)	690, 781
DdeI	CTNAG	3 cut(s)	60, 161, 792
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	2 cut(s)	67, 398
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	421
Eco147I	AGGCCT	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	48, 826
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	3 cut(s)	495, 570, 833
FatI	CATG	2 cut(s)	44, 822
FauI	CCCGC	2 cut(s)	226, 320
Fnu4HI	GCNGC	5 cut(s)	153, 196, 222, 249, 401
Fsp4HI	GCNGC	5 cut(s)	153, 196, 222, 249, 401
FspBI	CTAG	2 cut(s)	359, 929
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	5 cut(s)	153, 196, 222, 249, 401
GsaI	CCCAGC	1 cut(s)	820
GsuI	CTGGAG	2 cut(s)	108, 672
HaeIII	GGCC	5 cut(s)	17, 69, 378, 400, 453
HapII	CCGG	3 cut(s)	13, 233, 276
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	48, 826
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	2 cut(s)	140, 869
HpaII	CCGG	3 cut(s)	13, 233, 276
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	3 cut(s)	164, 342, 950
Hpy188III	TCNNGA	2 cut(s)	137, 233
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	122, 191
HpyCH4III	ACNGT	2 cut(s)	511, 910
HpyCH4IV	ACGT	2 cut(s)	209, 669
HpyCH4V	TGCA	5 cut(s)	4, 364, 623, 629, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 248, 397, 434
HpyF3I	CTNAG	3 cut(s)	60, 161, 792
HpySE526I	ACGT	2 cut(s)	209, 669
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	48, 826
HspAI	GCGC	1 cut(s)	261
Kpn2I	TCCGGA	1 cut(s)	232
KpnI	GGTACC	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	3 cut(s)	60, 220, 425
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	446, 755
MaeI	CTAG	2 cut(s)	359, 929
MaeII	ACGT	2 cut(s)	209, 669
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	95, 290, 325
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	2 cut(s)	132, 624
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	69, 106, 201
Mox20I	TGGCCA	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	456, 632
MslI	CAYNNNNRTG	2 cut(s)	467, 634
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	3 cut(s)	13, 233, 276
MspR9I	CCNGG	2 cut(s)	14, 450
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	2 cut(s)	242, 327
MwoI	GCNNNNNNNGC	4 cut(s)	221, 248, 397, 434
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	48, 826
NlaIV	GGNNCC	2 cut(s)	558, 691
NmuCI	GTSAC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	1 cut(s)	869
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	5 cut(s)	154, 197, 223, 250, 402
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	558, 691
PspPI	GGNCC	2 cut(s)	15, 557
RsaI	GTAC	2 cut(s)	691, 782
RsaNI	GTAC	2 cut(s)	690, 781
RseI	CAYNNNNRTG	2 cut(s)	467, 634
SaqAI	TTAA	2 cut(s)	456, 632
SatI	GCNGC	5 cut(s)	153, 196, 222, 249, 401
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	15, 557
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	14, 450
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	446, 755
SfcI	CTRYAG	2 cut(s)	538, 723
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	467, 634
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SpeI	ACTAGT	1 cut(s)	928
Sse9I	AATT	2 cut(s)	132, 624
SseBI	AGGCCT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	359, 929
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	12, 448
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	511, 910
TaiI	ACGT	2 cut(s)	212, 672
TaqI	TCGA	2 cut(s)	336, 518
TasI	AATT	2 cut(s)	132, 624
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	4 cut(s)	198, 224, 251, 403
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	2 cut(s)	456, 632
Tru9I	TTAA	2 cut(s)	456, 632
TscAI	CASTG	3 cut(s)	181, 516, 867
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	509, 516
TspRI	CASTG	3 cut(s)	181, 516, 867
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	2 cut(s)	359, 929
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.