Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Reverse (-)

76366718 .. 76369947

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCACCCGTGCCGGGCCTTGGATCCAGTAGGGGTAGCTACTCTATGTTCCGTGCTCCCTCAGTTGGACCATTCTCCACGACTATTTTACTTCACTTCTAGTCTTCGCCTTCGTCTCACTCGAACATCAATTTCAGACGCTACCTGCTCTCTCCCTGCTGCCACACTCAGATACCCAATCACTGAGCTTCGTATTCCTCGCCGCCGCCGCCTAGTGACGTCAGCTCCCGCCACTATGTTTCCGGAAAACGCGGTCCTGGCTGATATTTGCGCCACCGGAGTTGCCGGTGGTGTTGCTGTTTTCTTTCTCCTGTTGTGGGAACAAACCGCGAAGTTTGGGTTCTTCGATCAGAAACTCAACAGAAAGCTAGTGCATATCAGCATTGGCCTCGTTTTCATGCTTTGCTGGCCGCTATTCAGTTCGGGCTACCAAGGAGCACTTTTAGCATCTCTTATTCCAGGCCTTAATATTATACGAATGCTTCTACTGGGACTCGGAATAATGAAAGACGAAGCAACAGTGAAGTCAATGAGCAGATTTAATGACTATAGGGAACTTCTTAAGGGACCACTCTACTATGCCACAACCGTAACTTTGGCTTGTGTAGTCTATTGGAGAACTTCCCCCATTGCAATTGCAATAATATGCAATCTGTGTGCTGGAGATGGGTTAGCAGACGTTGTTGGTAGGCGTTTTGGTACTCAAAAACTTCCGTATAACAGAAACAAATCTATAGCTGGTAGTGTGGCAATGGCATCTGCTGGTTTTTTATCATCTATCGGGTACATGTACTATTTCTCCAAGTTTGGCTTTGTTGACAAGAGCTGGGATATGGTTTTGGGTTTTTTGGTTGTGTCTCTTGCCTCAGCACTGGTAGAATCACTTCCCATAAGCACCGTGCTTGATGACAACCTAACAGTTCCGCTTACTTCTATACTAGTTGGCAGTTTCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.94

Weight (kDa)

9.31

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	152
AccII	CGCG	2 cut(s)	251, 329
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	8 cut(s)	202, 205, 208, 228, 251, 327, 410, 923
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	3 cut(s)	700, 785, 791
AfiI	CCNNNNNNNGG	4 cut(s)	13, 19, 64, 316
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	786
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	2 cut(s)	255, 457
AluBI	AGCT	6 cut(s)	38, 187, 224, 367, 737, 825
AluI	AGCT	6 cut(s)	38, 187, 224, 367, 737, 825
Alw21I	GWGCWC	2 cut(s)	57, 439
Alw26I	GTCTC	2 cut(s)	119, 861
AlwI	GGATC	2 cut(s)	17, 30
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	4 cut(s)	15, 385, 407, 460
ApeKI	GCWGC	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	882
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	4 cut(s)	15, 67, 253, 566
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	3 cut(s)	67, 253, 566
BamHI	GGATCC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	867, 899
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	57, 439
BbvCI	CCTCAGC	1 cut(s)	865
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	2 cut(s)	257, 459
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	119, 861
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	4 cut(s)	99, 212, 368, 938
BfmI	CTRYAG	2 cut(s)	547, 732
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	5 cut(s)	159, 202, 205, 208, 410
BlsI	GCNGC	5 cut(s)	160, 203, 206, 209, 411
Bme1390I	CCNGG	3 cut(s)	14, 257, 459
Bme18I	GGWCC	3 cut(s)	67, 253, 566
BmgT120I	GGNCC	4 cut(s)	15, 67, 253, 566
BmiI	GGNNCC	2 cut(s)	24, 567
BmrFI	CCNGG	3 cut(s)	14, 257, 459
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	455, 764
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	865
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	18, 430
BsaWI	WCCGGW	2 cut(s)	241, 275
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 782, 812
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 19, 64, 316
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	26, 492, 876
Bse3DI	GCAATG	2 cut(s)	627, 756
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	257, 459
BseDI	CCNNGG	2 cut(s)	18, 430
BseLI	CCNNNNNNNGG	4 cut(s)	13, 19, 64, 316
BseMI	GCAATG	2 cut(s)	627, 756
BseMII	CTCAG	4 cut(s)	74, 174, 181, 879
BseNI	ACTGG	3 cut(s)	26, 492, 876
BseXI	GCAGC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	825
Bsh1236I	CGCG	2 cut(s)	251, 329
BshFI	GGCC	4 cut(s)	17, 387, 409, 462
BsiHKAI	GWGCWC	2 cut(s)	57, 439
BsiSI	CCGG	4 cut(s)	13, 242, 276, 285
BslFI	GGGAC	2 cut(s)	504, 579
BslI	CCNNNNNNNGG	4 cut(s)	13, 19, 64, 316
BsmAI	GTCTC	2 cut(s)	119, 861
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	504, 579
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	17, 387, 409, 462
Bsp1286I	GDGCHC	2 cut(s)	57, 439
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	22, 346
BspACI	CCGC	8 cut(s)	202, 205, 208, 228, 251, 327, 410, 923
BspANI	GGCC	4 cut(s)	17, 387, 409, 462
BspCNI	CTCAG	4 cut(s)	73, 175, 180, 878
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	251, 329
BspLI	GGNNCC	2 cut(s)	24, 567
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	17, 30
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	627, 756
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	26, 492, 876
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	18, 430
BssMI	GATC	2 cut(s)	22, 346
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	18, 430
Bst2UI	CCWGG	2 cut(s)	257, 459
Bst4CI	ACNGT	4 cut(s)	520, 589, 898, 919
BstACI	GRCGYC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	60, 167, 183, 865
BstFNI	CGCG	2 cut(s)	251, 329
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	25, 349
BstMAI	GTCTC	2 cut(s)	119, 861
BstMBI	GATC	2 cut(s)	22, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 257, 406, 443
BstNI	CCWGG	2 cut(s)	257, 459
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	3 cut(s)	12, 255, 457
BstSFI	CTRYAG	2 cut(s)	547, 732
BstUI	CGCG	2 cut(s)	251, 329
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	17, 387, 409, 462
BtsIMutI	CAGTG	3 cut(s)	180, 525, 869
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	4 cut(s)	15, 67, 253, 566
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	699, 784, 790
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	2 cut(s)	397, 787
CviQI	GTAC	3 cut(s)	699, 784, 790
DdeI	CTNAG	4 cut(s)	60, 167, 183, 865
DpnI	GATC	2 cut(s)	24, 348
DpnII	GATC	2 cut(s)	22, 346
EaeI	YGGCCR	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	18, 430
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	3 cut(s)	67, 253, 566
EcoRII	CCWGG	2 cut(s)	255, 457
EcoT14I	CCWWGG	2 cut(s)	18, 430
ErhI	CCWWGG	2 cut(s)	18, 430
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	400, 790
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 794, 826
FaqI	GGGAC	2 cut(s)	504, 579
FatI	CATG	2 cut(s)	396, 786
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	159, 202, 205, 208, 410
Fsp4HI	GCNGC	5 cut(s)	159, 202, 205, 208, 410
FspBI	CTAG	4 cut(s)	99, 212, 368, 938
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	5 cut(s)	159, 202, 205, 208, 410
GsaI	CCCAGC	1 cut(s)	829
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	4 cut(s)	17, 387, 409, 462
HapII	CCGG	4 cut(s)	13, 242, 276, 285
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	400, 790
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	2 cut(s)	492, 878
HpaII	CCGG	4 cut(s)	13, 242, 276, 285
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	5 cut(s)	136, 170, 351, 497, 959
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	817
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	4 cut(s)	520, 589, 898, 919
HpyCH4IV	ACGT	2 cut(s)	218, 678
HpyCH4V	TGCA	5 cut(s)	4, 373, 632, 638, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 257, 406, 443
HpyF3I	CTNAG	4 cut(s)	60, 167, 183, 865
HpySE526I	ACGT	2 cut(s)	218, 678
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	400, 790
HspAI	GCGC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	22, 346
LmnI	GCTCC	3 cut(s)	60, 229, 434
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	2 cut(s)	455, 764
MaeI	CTAG	4 cut(s)	99, 212, 368, 938
MaeII	ACGT	2 cut(s)	218, 678
MaeIII	GTNAC	2 cut(s)	214, 589
MalI	GATC	2 cut(s)	24, 348
MboI	GATC	2 cut(s)	22, 346
MboII	GAAGA	2 cut(s)	95, 334
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	57, 439
MluCI	AATT	2 cut(s)	129, 633
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	69, 207, 398, 874
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	882
MseI	TTAA	3 cut(s)	465, 540, 561
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	4 cut(s)	13, 242, 276, 285
MspR9I	CCNGG	3 cut(s)	14, 257, 459
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	257, 459
MvnI	CGCG	2 cut(s)	251, 329
MwoI	GCNNNNNNNGC	4 cut(s)	207, 257, 406, 443
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	22, 346
NlaIII	CATG	2 cut(s)	400, 790
NlaIV	GGNNCC	2 cut(s)	24, 567
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	462
PciI	ACATGT	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	1 cut(s)	878
PkrI	GCNGC	5 cut(s)	160, 203, 206, 209, 411
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PscI	ACATGT	1 cut(s)	786
Psp6I	CCWGG	2 cut(s)	255, 457
PspFI	CCCAGC	1 cut(s)	825
PspGI	CCWGG	2 cut(s)	255, 457
PspN4I	GGNNCC	2 cut(s)	24, 567
PspPI	GGNCC	4 cut(s)	15, 67, 253, 566
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	700, 785, 791
RsaNI	GTAC	3 cut(s)	699, 784, 790
SaqAI	TTAA	3 cut(s)	465, 540, 561
SatI	GCNGC	5 cut(s)	159, 202, 205, 208, 410
Sau3AI	GATC	2 cut(s)	22, 346
Sau96I	GGNCC	4 cut(s)	15, 67, 253, 566
SchI	GAGTC	1 cut(s)	486
ScrFI	CCNGG	3 cut(s)	14, 257, 459
SduI	GDGCHC	2 cut(s)	57, 439
SfaNI	GCATC	2 cut(s)	455, 764
SfcI	CTRYAG	2 cut(s)	547, 732
SinI	GGWCC	3 cut(s)	67, 253, 566
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	2 cut(s)	129, 633
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	8 cut(s)	202, 205, 208, 228, 251, 327, 410, 923
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	4 cut(s)	99, 212, 368, 938
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	12, 255, 457
StyI	CCWWGG	2 cut(s)	18, 430
TaaI	ACNGT	4 cut(s)	520, 589, 898, 919
TaiI	ACGT	2 cut(s)	221, 681
TaqI	TCGA	2 cut(s)	121, 345
TasI	AATT	2 cut(s)	129, 633
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	4 cut(s)	204, 207, 210, 412
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	3 cut(s)	465, 540, 561
Tru9I	TTAA	3 cut(s)	465, 540, 561
TscAI	CASTG	3 cut(s)	187, 525, 876
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	385, 518, 940
TspGWI	ACGGA	2 cut(s)	40, 702
TspRI	CASTG	3 cut(s)	187, 525, 876
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	3 cut(s)	67, 253, 566
XceI	RCATGY	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	4 cut(s)	99, 212, 368, 938
ZraI	GACGTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.