Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

4295103 .. 4298219

Gene Structure 3117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05610.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTACTCTTGCCTTGCCTTTGTTCCAGTAGCCATAAAAGGCACGGGCAAGCCATGTTCCTTCCTCTACCAGTTAGGCCACCTACCAAGATCGTCTTCTACCTCTAGACTCGGTCTTCTTCTTCTCCCTTCCAATTCAATTGCGGACACTTCCACCCTATCTCTCCTCGCTCCCTCACTCAGATTCCCACTCACAACAGCAACAATCTCCAAGCCTCGGAGTCGCCGCCGCCAACTGACGTCAACTCCCGCCACTATGCTTCCAGAAAACCCGGTGGTTGCTGACACTTGCGCCGCCTTCATTGCCGGCGGCGTTGCTCTTTTCTTCCTGCTGTTGTGGCAAGAAACCGCCAAGCGTGGGATCTTCGACCAGAAACTCAATAGAAAGCTTGTCCACGTGAGCATTGGCCTAGTTTTCATGCTTTGCTGGCCACTATTCAGTTCTGGCCTTCAAGGAGCAGTTTTTGCATCTCTTACCCCAGGCCTCAATATCTTCCGAATGCTTCTATTGGGACTAGGAATATGGAAAGATGAGGCAACAGTGAAATCAATGAGCAGATATGGAGACCACAGGGAACTTCTTAAGGGACCACTGTACTATGCCACGACAATAACTTTGGCTTGTCTAGTCTATTGGAGAACTTCCCCTATTGCAATTGCTCTTATATGCAATTTGTGTGCTGGAGACGGTTTAGCTGATATTGTTGGTAGGCAGTTTGGTACCCTGAAACTTCCATACAACAGAAACAAATCTATAGCCGGTAGTGTTGCAATGGCATCTGCTGGTTTTTTAACATCTATCGGGTACATGTACTATTTCTCCAGCTTTGGATATGTTCAGGAAAGTTGGGGCATGGCTTTGGGTTTCTTGGTTGTGTCTCTTGCCTCGGCACTGGTAGAATCGCTCCCCATAAGCACCGAGCTTGATGACAACCTAACAGTTTCACTTACTTCTGCATTAATTGGCAGTTTGGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

35.21

Weight (kDa)

9.36

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	7 cut(s)	143, 226, 229, 249, 294, 309, 348
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	428
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	5 cut(s)	5, 596, 721, 806, 812
AfiI	CCNNNNNNNGG	2 cut(s)	216, 357
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	2 cut(s)	138, 452
AjnI	CCWGG	1 cut(s)	478
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	4 cut(s)	388, 695, 825, 922
AluI	AGCT	4 cut(s)	388, 695, 825, 922
Alw26I	GTCTC	3 cut(s)	558, 678, 882
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	5 cut(s)	76, 406, 428, 445, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AseI	ATTAAT	1 cut(s)	959
Asp718I	GGTACC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	587
AsuC2I	CCSGG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	719
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	87, 107
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	3 cut(s)	558, 678, 882
BfaI	CTAG	4 cut(s)	105, 410, 515, 626
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	4 cut(s)	226, 229, 294, 310
BlsI	GCNGC	4 cut(s)	227, 230, 295, 311
Bme1390I	CCNGG	2 cut(s)	272, 480
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	588, 721
BmrFI	CCNGG	2 cut(s)	272, 480
BmsI	GCATC	2 cut(s)	476, 785
BpiI	GAAGAC	2 cut(s)	87, 107
BpmI	CTGGAG	2 cut(s)	702, 805
BpuMI	CCSGG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	215, 478, 885
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 357
Bse118I	RCCGGY	2 cut(s)	305, 758
Bse1I	ACTGG	3 cut(s)	26, 70, 897
Bse3DI	GCAATG	2 cut(s)	300, 777
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	215, 478, 885
BseLI	CCNNNNNNNGG	2 cut(s)	216, 357
BseMI	GCAATG	2 cut(s)	300, 777
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	3 cut(s)	26, 70, 897
BseRI	GAGGAG	1 cut(s)	155
BshFI	GGCC	5 cut(s)	78, 408, 430, 447, 483
BshNI	GGYRCC	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	272, 306, 759
BslFI	GGGAC	2 cut(s)	525, 600
BslI	CCNNNNNNNGG	2 cut(s)	216, 357
BsmAI	GTCTC	3 cut(s)	558, 678, 882
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	2 cut(s)	525, 600
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	78, 408, 430, 447, 483
Bso31I	GGTCTC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	89, 360
BspACI	CCGC	7 cut(s)	143, 226, 229, 249, 294, 309, 348
BspANI	GGCC	5 cut(s)	78, 408, 430, 447, 483
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	588, 721
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	719
BspTI	CTTAAG	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	558
BsrDI	GCAATG	2 cut(s)	300, 777
BsrFI	RCCGGY	2 cut(s)	305, 758
BsrI	ACTGG	3 cut(s)	26, 70, 897
BssAI	RCCGGY	2 cut(s)	305, 758
BssECI	CCNNGG	3 cut(s)	215, 478, 885
BssMI	GATC	2 cut(s)	89, 360
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	4 cut(s)	541, 594, 689, 940
BstACI	GRCGYC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	3 cut(s)	50, 307, 428
BstDEI	CTNAG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	92, 363
BstMAI	GTCTC	3 cut(s)	558, 678, 882
BstMBI	GATC	2 cut(s)	89, 360
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 337, 427, 464
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	2 cut(s)	270, 478
BstSFI	CTRYAG	1 cut(s)	753
BstV2I	GAAGAC	2 cut(s)	87, 107
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	5 cut(s)	78, 408, 430, 447, 483
BtsIMutI	CAGTG	3 cut(s)	546, 590, 890
Cac8I	GCNNGC	3 cut(s)	50, 307, 428
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	2 cut(s)	305, 758
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	5 cut(s)	4, 595, 720, 805, 811
CviAII	CATG	4 cut(s)	54, 418, 808, 853
CviQI	GTAC	5 cut(s)	4, 595, 720, 805, 811
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	91, 362
DpnII	GATC	2 cut(s)	89, 360
EaeI	YGGCCR	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	587
Eco72I	CACGTG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	4 cut(s)	57, 421, 811, 856
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	2 cut(s)	525, 600
FatI	CATG	4 cut(s)	53, 417, 807, 852
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	226, 229, 294, 310
Fsp4HI	GCNGC	4 cut(s)	226, 229, 294, 310
FspBI	CTAG	4 cut(s)	105, 410, 515, 626
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	4 cut(s)	226, 229, 294, 310
GsuI	CTGGAG	2 cut(s)	702, 805
HaeIII	GGCC	5 cut(s)	78, 408, 430, 447, 483
HapII	CCGG	3 cut(s)	272, 306, 759
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	57, 421, 811, 856
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	108, 183, 220, 899
HpaII	CCGG	3 cut(s)	272, 306, 759
Hpy166II	GTNNAC	2 cut(s)	243, 394
Hpy188I	TCNGA	3 cut(s)	182, 219, 497
Hpy188III	TCNNGA	3 cut(s)	105, 263, 839
Hpy8I	GTNNAC	2 cut(s)	243, 394
HpyAV	CCTTC	4 cut(s)	70, 138, 307, 458
HpyCH4III	ACNGT	4 cut(s)	541, 594, 689, 940
HpyCH4IV	ACGT	2 cut(s)	239, 396
HpyCH4V	TGCA	5 cut(s)	467, 653, 669, 770, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 337, 427, 464
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	239, 396
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	57, 421, 811, 856
HspAI	GCGC	1 cut(s)	291
KpnI	GGTACC	1 cut(s)	723
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	89, 360
LmnI	GCTCC	3 cut(s)	175, 455, 909
LweI	GCATC	2 cut(s)	476, 785
MaeI	CTAG	4 cut(s)	105, 410, 515, 626
MaeII	ACGT	2 cut(s)	239, 396
MalI	GATC	2 cut(s)	91, 362
MboI	GATC	2 cut(s)	89, 360
MboII	GAAGA	7 cut(s)	87, 107, 110, 113, 316, 355, 484
MfeI	CAATTG	2 cut(s)	138, 654
MflI	RGATCY	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	5 cut(s)	133, 138, 654, 670, 960
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	102, 229
MnlI	CCTC	8 cut(s)	74, 112, 176, 184, 225, 494, 526, 895
Mox20I	TGGCCA	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	3 cut(s)	582, 791, 959
Msp20I	TGGCCA	1 cut(s)	430
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	3 cut(s)	272, 306, 759
MspR9I	CCNGG	2 cut(s)	272, 480
MunI	CAATTG	2 cut(s)	138, 654
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	302, 337, 427, 464
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	89, 360
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	4 cut(s)	57, 421, 811, 856
NlaIV	GGNNCC	2 cut(s)	588, 721
NmeAIII	GCCGAG	1 cut(s)	866
NspI	RCATGY	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	483
PciI	ACATGT	1 cut(s)	807
PctI	GAATGC	1 cut(s)	504
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	183, 899
PflFI	GACNNNGTC	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	227, 230, 295, 311
PleI	GAGTC	2 cut(s)	102, 228
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	102, 228
Ppu21I	YACGTR	1 cut(s)	397
PscI	ACATGT	1 cut(s)	807
PshBI	ATTAAT	1 cut(s)	959
Psp6I	CCWGG	1 cut(s)	478
PspCI	CACGTG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	588, 721
PspPI	GGNCC	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	360
PsyI	GACNNNGTC	1 cut(s)	111
RsaI	GTAC	5 cut(s)	5, 596, 721, 806, 812
RsaNI	GTAC	5 cut(s)	4, 595, 720, 805, 811
SaqAI	TTAA	3 cut(s)	582, 791, 959
SatI	GCNGC	4 cut(s)	226, 229, 294, 310
Sau3AI	GATC	2 cut(s)	89, 360
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	2 cut(s)	102, 229
ScrFI	CCNGG	2 cut(s)	272, 480
SetI	ASST	9 cut(s)	84, 104, 242, 390, 399, 697, 827, 924, 936
SfaNI	GCATC	2 cut(s)	476, 785
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	5 cut(s)	133, 138, 654, 670, 960
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	7 cut(s)	143, 226, 229, 249, 294, 309, 348
SspMI	CTAG	4 cut(s)	105, 410, 515, 626
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	270, 478
TaaI	ACNGT	4 cut(s)	541, 594, 689, 940
TaiI	ACGT	2 cut(s)	242, 399
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	5 cut(s)	133, 138, 654, 670, 960
TatI	WGTACW	3 cut(s)	3, 594, 810
TauI	GCSGC	4 cut(s)	228, 231, 296, 312
TfiI	GAWTC	2 cut(s)	183, 899
Tru1I	TTAA	3 cut(s)	582, 791, 959
Tru9I	TTAA	3 cut(s)	582, 791, 959
TscAI	CASTG	3 cut(s)	546, 597, 897
TspDTI	ATGAA	2 cut(s)	289, 406
TspRI	CASTG	3 cut(s)	546, 597, 897
Tth111I	GACNNNGTC	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	959
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	4 cut(s)	105, 410, 515, 626
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.