Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

5706620 .. 5709873

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1066300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCACTCTTCCCTTGCCTTTGTTCCAGTAGCCATAAAGGGCACGGGCAAACCATGTTCCTTCCTCTACCAGGTAGGCTACCTACCAAGATCGTCTTCTACCACTAGACTCGGTCTTCTTCTTCTCCCTTCCAATTCAATTGCAGACACTTCCACCCTCTCTCTCCTCGCTCCCTCACTCAGATTCGAACTCACAACAACAATCTCCAAGCCTCGGAGTCGCCGCCGCCAACTGACGTCAACTCCCGCCACTATGCTTCCAGAAAACCCGGTGGTTGCTGACACTTGCGCCGCCTTCATTGCCGGCGGCGTTGCTCTTTTCTTCCTGCTATTGTGGCAAGAAACCGCCAAGCGTGGGATCTTCGACCAGAAACTCAATAGAAAATTTGTCCACGTGAGCATTGGCCTTGTTTTCATGCTGTGCTGGCCACTATTCAGTTCTGGCCTTCAAGGAGCATTTTTTGCATCTCTTACTCCAGGCCTCAATATCTTCCGAATGCTTCTATTGGGACTAGGAATATGGAAGGATGAGGCAACAGTGAAATCAATGAGCAGATATGGAGACCACAGGGAACTTCTTAAGGGACCACTGTACTATGCCACGACAATAACTTTGGCTTGTCTAGTCTATTGGAGAACTTCCCCTATTGCAATTGCTCTTATATGCAATTTGTGTGCTGGAGATGGTTTAGCTGACATTGTTGGTAGGCGGTTTGGTACCCAGAAACTTCCATACAACAGAAACAAATCTATAGCCGGTAGTGTTGCAATGGCATCTGCTGGTTTTTTAACATCTATCGGGTACATGTACTATTTCTCCAGCTTTGGATATGTTCAGGAAAGTTGGGGCATGGCTTTGGGTTTCTTGGTTGTGTCTCTTGCCTCGGCACTGGTAGAATCGCTCCCCATAAGCACTGAGCTTGATGACAACCTAACAGTTTCACTTACTTCTGCATTAATTGGCAGTTTGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

35.28

Weight (kDa)

9.42

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	716
AciI	CCGC	7 cut(s)	223, 226, 246, 291, 306, 345, 709
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	4 cut(s)	593, 718, 803, 809
AfiI	CCNNNNNNNGG	3 cut(s)	70, 213, 354
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	2 cut(s)	138, 449
AjnI	CCWGG	2 cut(s)	69, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	3 cut(s)	692, 822, 919
AluI	AGCT	3 cut(s)	692, 822, 919
Alw26I	GTCTC	2 cut(s)	555, 879
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	4 cut(s)	403, 425, 442, 478
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AseI	ATTAAT	1 cut(s)	956
Asp718I	GGTACC	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	716
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	2 cut(s)	87, 107
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	2 cut(s)	71, 477
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	555, 879
BfaI	CTAG	3 cut(s)	105, 512, 623
BfmI	CTRYAG	1 cut(s)	750
BfrI	CTTAAG	1 cut(s)	578
BisI	GCNGC	4 cut(s)	223, 226, 291, 307
BlsI	GCNGC	4 cut(s)	224, 227, 292, 308
Bme1390I	CCNGG	3 cut(s)	71, 269, 477
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	585, 718
BmrFI	CCNGG	3 cut(s)	71, 269, 477
BmsI	GCATC	2 cut(s)	473, 782
BpiI	GAAGAC	2 cut(s)	87, 107
BpmI	CTGGAG	3 cut(s)	459, 699, 802
Bpu14I	TTCGAA	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	212, 882
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 800, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 213, 354
Bse118I	RCCGGY	2 cut(s)	302, 755
Bse1I	ACTGG	2 cut(s)	26, 894
Bse3DI	GCAATG	2 cut(s)	297, 774
BseBI	CCWGG	2 cut(s)	71, 477
BseDI	CCNNGG	2 cut(s)	212, 882
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	70, 213, 354
BseMI	GCAATG	2 cut(s)	297, 774
BseMII	CTCAG	2 cut(s)	193, 906
BseNI	ACTGG	2 cut(s)	26, 894
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	44
BshFI	GGCC	4 cut(s)	405, 427, 444, 480
BshNI	GGYRCC	1 cut(s)	716
BsiSI	CCGG	3 cut(s)	269, 303, 756
BslFI	GGGAC	2 cut(s)	522, 597
BslI	CCNNNNNNNGG	3 cut(s)	70, 213, 354
BsmAI	GTCTC	2 cut(s)	555, 879
BsmFI	GGGAC	2 cut(s)	522, 597
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	4 cut(s)	405, 427, 444, 480
Bso31I	GGTCTC	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	89, 357
BspACI	CCGC	7 cut(s)	223, 226, 246, 291, 306, 345, 709
BspANI	GGCC	4 cut(s)	405, 427, 444, 480
BspCNI	CTCAG	2 cut(s)	192, 907
BspLI	GGNNCC	2 cut(s)	585, 718
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	555
BsrDI	GCAATG	2 cut(s)	297, 774
BsrFI	RCCGGY	2 cut(s)	302, 755
BsrI	ACTGG	2 cut(s)	26, 894
BssAI	RCCGGY	2 cut(s)	302, 755
BssECI	CCNNGG	2 cut(s)	212, 882
BssMI	GATC	2 cut(s)	89, 357
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	71, 477
Bst4CI	ACNGT	3 cut(s)	538, 591, 937
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	236
BstAFI	CTTAAG	1 cut(s)	578
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	304, 425
BstDEI	CTNAG	2 cut(s)	179, 915
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	92, 360
BstMAI	GTCTC	2 cut(s)	555, 879
BstMBI	GATC	2 cut(s)	89, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 334, 424, 461
BstNI	CCWGG	2 cut(s)	71, 477
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	3 cut(s)	69, 267, 475
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	44
BstV2I	GAAGAC	2 cut(s)	87, 107
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	405, 427, 444, 480
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	4 cut(s)	543, 587, 887, 912
Cac8I	GCNNGC	2 cut(s)	304, 425
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	2 cut(s)	302, 755
Cfr13I	GGNCC	1 cut(s)	584
CsiI	ACCWGGT	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	592, 717, 802, 808
CviAII	CATG	4 cut(s)	54, 415, 805, 850
CviQI	GTAC	4 cut(s)	592, 717, 802, 808
DdeI	CTNAG	2 cut(s)	179, 915
DpnI	GATC	2 cut(s)	91, 359
DpnII	GATC	2 cut(s)	89, 357
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	584
Eco72I	CACGTG	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	69, 475
FaeI	CATG	4 cut(s)	57, 418, 808, 853
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	2 cut(s)	522, 597
FatI	CATG	4 cut(s)	53, 414, 804, 849
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	223, 226, 291, 307
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	4 cut(s)	223, 226, 291, 307
FspBI	CTAG	3 cut(s)	105, 512, 623
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	4 cut(s)	223, 226, 291, 307
GsuI	CTGGAG	3 cut(s)	459, 699, 802
HaeIII	GGCC	4 cut(s)	405, 427, 444, 480
HapII	CCGG	3 cut(s)	269, 303, 756
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	57, 418, 808, 853
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	4 cut(s)	108, 183, 217, 896
HpaII	CCGG	3 cut(s)	269, 303, 756
Hpy166II	GTNNAC	2 cut(s)	240, 391
Hpy188I	TCNGA	4 cut(s)	182, 216, 494, 977
Hpy188III	TCNNGA	2 cut(s)	260, 836
Hpy8I	GTNNAC	2 cut(s)	240, 391
HpyAV	CCTTC	5 cut(s)	70, 138, 304, 455, 517
HpyCH4III	ACNGT	3 cut(s)	538, 591, 937
HpyCH4IV	ACGT	2 cut(s)	236, 393
HpyCH4V	TGCA	7 cut(s)	4, 143, 464, 650, 666, 767, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 334, 424, 461
HpyF3I	CTNAG	2 cut(s)	179, 915
HpySE526I	ACGT	2 cut(s)	236, 393
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	57, 418, 808, 853
HspAI	GCGC	1 cut(s)	288
KpnI	GGTACC	1 cut(s)	720
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	89, 357
LmnI	GCTCC	3 cut(s)	175, 452, 906
LweI	GCATC	2 cut(s)	473, 782
MabI	ACCWGGT	1 cut(s)	69
MaeI	CTAG	3 cut(s)	105, 512, 623
MaeII	ACGT	2 cut(s)	236, 393
MalI	GATC	2 cut(s)	91, 359
MboI	GATC	2 cut(s)	89, 357
MboII	GAAGA	7 cut(s)	87, 107, 110, 113, 313, 352, 481
MfeI	CAATTG	2 cut(s)	138, 651
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	6 cut(s)	133, 138, 383, 651, 667, 957
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	102, 226
MnlI	CCTC	8 cut(s)	74, 167, 176, 184, 222, 491, 523, 892
Mox20I	TGGCCA	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	3 cut(s)	579, 788, 956
Msp20I	TGGCCA	1 cut(s)	427
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	3 cut(s)	269, 303, 756
MspR9I	CCNGG	3 cut(s)	71, 269, 477
MunI	CAATTG	2 cut(s)	138, 651
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	71, 477
MwoI	GCNNNNNNNGC	4 cut(s)	299, 334, 424, 461
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	89, 357
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	57, 418, 808, 853
NlaIV	GGNNCC	2 cut(s)	585, 718
NmeAIII	GCCGAG	1 cut(s)	863
NspI	RCATGY	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	480
PciI	ACATGT	1 cut(s)	804
PctI	GAATGC	1 cut(s)	501
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	183, 896
PflFI	GACNNNGTC	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	224, 227, 292, 308
PleI	GAGTC	2 cut(s)	102, 225
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	2 cut(s)	102, 225
Ppu21I	YACGTR	1 cut(s)	394
PscI	ACATGT	1 cut(s)	804
PshBI	ATTAAT	1 cut(s)	956
Psp6I	CCWGG	2 cut(s)	69, 475
PspCI	CACGTG	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	69, 475
PspN4I	GGNNCC	2 cut(s)	585, 718
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	357
PsyI	GACNNNGTC	1 cut(s)	111
RsaI	GTAC	4 cut(s)	593, 718, 803, 809
RsaNI	GTAC	4 cut(s)	592, 717, 802, 808
SaqAI	TTAA	3 cut(s)	579, 788, 956
SatI	GCNGC	4 cut(s)	223, 226, 291, 307
Sau3AI	GATC	2 cut(s)	89, 357
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	2 cut(s)	102, 226
ScrFI	CCNGG	3 cut(s)	71, 269, 477
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	75, 84, 239, 396, 694, 824, 921, 933
SexAI	ACCWGGT	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	473, 782
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	6 cut(s)	133, 138, 383, 651, 667, 957
SseBI	AGGCCT	1 cut(s)	480
SsiI	CCGC	7 cut(s)	223, 226, 246, 291, 306, 345, 709
SspMI	CTAG	3 cut(s)	105, 512, 623
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	69, 267, 475
TaaI	ACNGT	3 cut(s)	538, 591, 937
TaiI	ACGT	2 cut(s)	239, 396
TaqI	TCGA	2 cut(s)	186, 363
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	6 cut(s)	133, 138, 383, 651, 667, 957
TatI	WGTACW	2 cut(s)	591, 807
TauI	GCSGC	4 cut(s)	225, 228, 293, 309
TfiI	GAWTC	2 cut(s)	183, 896
Tru1I	TTAA	3 cut(s)	579, 788, 956
Tru9I	TTAA	3 cut(s)	579, 788, 956
TscAI	CASTG	4 cut(s)	543, 594, 894, 919
TspDTI	ATGAA	2 cut(s)	286, 403
TspRI	CASTG	4 cut(s)	543, 594, 894, 919
Tth111I	GACNNNGTC	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	956
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	3 cut(s)	105, 512, 623
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.