Rh5BG480600

Phytol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011208
Physical Location & Seq
Reverse (-)
76431622 .. 76434595
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG480600.1

Sequence Viewer

Length: 678 bp
ATGCACCCGTGCCGGGCCTTGGATCCAGTAGGGGTAGCTACTCTATGTTCCGTGCTCCCTCAGTTGGACCATTCTCCACGACTGACTTACTTCACTTCTAGTCTTCGCCTTCGTCTCACTCGAACATCAATTTCAGACGCTACCTACTCTCTCCCTGCTGCCACACTCAGATACCCAATCACTGAGCTTCGTATTCCTCGCCGCCGCCTAGTGACGTCAGCTCCCGCCACTATGTTTCCGGAAAACGCGGTCCTGGCTGATATTTGCGCCACCGGAGTTGCCGGTGGTGTTGCTGTTTTCTTTCTTCTGTTGTGGGAACAAACCGCGAAGTTTGGGTTCTTCGATCAGAAACTCAACAGAAAGCTAGTGCATATCAGCATTGGCCTCGTTTTCATGCTTTGCTGGCCGCTATTCAGTTCGGGCTACCAAGGAGCACTTTTAGCATCTCTTATTCCAGGCCTTAATATTATACGAATGCTTCTACTGGGACTCGGAATAATGAAAGACGAAGCAACAGTGAAGTCAATGAGCAGATTTAATGACTATAGGGAACTTCTTAAGGGACCACTCTACTATGCCACAACCATAACTTTGGCTTGTGTAGTCTATTGGAGAACTTCCCCCATTGCAATTGCAATAATATGCAATCTGTGTGCTGGAGATGGTACATTTAATTGA

Protein Analysis

225

Amino Acids

24.81

Weight (kDa)

9.3

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58560
fragaria_vesca FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica Prupe.6G052700_v2.0.a1
pyrus_communis pycom03g05040 pycom11g05610
rosa_chinensis RchiOBHm_Chr5g0070611
rosa_laevigata RLG00000036142
rosa_multiflora Rmu_sc0002443.1_g000007
rosa_roxburghii Rroxscaffold_1G00010630
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana Rw5G043070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AccII CGCG 2 cut(s) 248, 326
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 6 cut(s) 202, 205, 225, 248, 324, 407
AclWI GGATC 2 cut(s) 17, 30
AcoI YGGCCR 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 3 cut(s) 13, 19, 64
AflII CTTAAG 1 cut(s) 557
AjnI CCWGG 2 cut(s) 252, 454
AluBI AGCT 4 cut(s) 38, 187, 221, 364
AluI AGCT 4 cut(s) 38, 187, 221, 364
Alw21I GWGCWC 2 cut(s) 57, 436
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 17, 30
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 4 cut(s) 15, 382, 404, 457
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 4 cut(s) 15, 67, 250, 563
AsuC2I CCSGG 1 cut(s) 14
AvaII GGWCC 3 cut(s) 67, 250, 563
BamHI GGATCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 57, 436
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 656
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 2 cut(s) 254, 456
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 3 cut(s) 99, 209, 365
BfmI CTRYAG 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 4 cut(s) 159, 202, 205, 407
BlsI GCNGC 4 cut(s) 160, 203, 206, 408
Bme1390I CCNGG 3 cut(s) 14, 254, 456
Bme18I GGWCC 3 cut(s) 67, 250, 563
BmgT120I GGNCC 4 cut(s) 15, 67, 250, 563
BmiI GGNNCC 2 cut(s) 24, 564
BmrFI CCNGG 3 cut(s) 14, 254, 456
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 18, 427
BsaWI WCCGGW 2 cut(s) 238, 272
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 19, 64
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 26, 489
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 2 cut(s) 254, 456
BseDI CCNNGG 2 cut(s) 18, 427
BseLI CCNNNNNNNGG 3 cut(s) 13, 19, 64
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 3 cut(s) 74, 174, 181
BseNI ACTGG 2 cut(s) 26, 489
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 2 cut(s) 248, 326
BshFI GGCC 4 cut(s) 17, 384, 406, 459
BsiHKAI GWGCWC 2 cut(s) 57, 436
BsiSI CCGG 4 cut(s) 13, 239, 273, 282
BslFI GGGAC 2 cut(s) 501, 576
BslI CCNNNNNNNGG 3 cut(s) 13, 19, 64
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 501, 576
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 4 cut(s) 17, 384, 406, 459
Bsp1286I GDGCHC 2 cut(s) 57, 436
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 22, 343
BspACI CCGC 6 cut(s) 202, 205, 225, 248, 324, 407
BspANI GGCC 4 cut(s) 17, 384, 406, 459
BspCNI CTCAG 3 cut(s) 73, 175, 180
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 2 cut(s) 248, 326
BspLI GGNNCC 2 cut(s) 24, 564
BspPI GGATC 2 cut(s) 17, 30
BspTI CTTAAG 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 26, 489
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 18, 427
BssMI GATC 2 cut(s) 22, 343
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 18, 427
Bst2UI CCWGG 2 cut(s) 254, 456
Bst4CI ACNGT 1 cut(s) 517
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 60, 167, 183
BstFNI CGCG 2 cut(s) 248, 326
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 25, 346
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 22, 343
BstMWI GCNNNNNNNGC 3 cut(s) 254, 403, 440
BstNI CCWGG 2 cut(s) 254, 456
BstSCI CCNGG 3 cut(s) 12, 252, 454
BstSFI CTRYAG 1 cut(s) 544
BstUI CGCG 2 cut(s) 248, 326
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 4 cut(s) 17, 384, 406, 459
BtsIMutI CAGTG 2 cut(s) 180, 522
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 4 cut(s) 15, 67, 250, 563
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 666
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 3 cut(s) 60, 167, 183
DpnI GATC 2 cut(s) 24, 345
DpnII GATC 2 cut(s) 22, 343
EaeI YGGCCR 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 18, 427
Eco147I AGGCCT 1 cut(s) 459
Eco47I GGWCC 3 cut(s) 67, 250, 563
EcoRII CCWGG 2 cut(s) 252, 454
EcoT14I CCWWGG 2 cut(s) 18, 427
ErhI CCWWGG 2 cut(s) 18, 427
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 397
FaiI YATR 9 cut(s) 46, 233, 372, 395, 470, 546, 576, 587, 643
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 2 cut(s) 501, 576
FatI CATG 1 cut(s) 393
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 159, 202, 205, 407
Fsp4HI GCNGC 4 cut(s) 159, 202, 205, 407
FspBI CTAG 3 cut(s) 99, 209, 365
GlaI GCGC 1 cut(s) 268
GluI GCNGC 4 cut(s) 159, 202, 205, 407
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 4 cut(s) 17, 384, 406, 459
HapII CCGG 4 cut(s) 13, 239, 273, 282
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 1 cut(s) 489
HpaII CCGG 4 cut(s) 13, 239, 273, 282
Hpy188I TCNGA 4 cut(s) 136, 170, 348, 494
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 4, 370, 629, 635, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 403, 440
HpyF3I CTNAG 3 cut(s) 60, 167, 183
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 267
Kpn2I TCCGGA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 22, 343
LmnI GCTCC 3 cut(s) 60, 226, 431
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 452
MaeI CTAG 3 cut(s) 99, 209, 365
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 24, 345
MboI GATC 2 cut(s) 22, 343
MboII GAAGA 3 cut(s) 95, 296, 331
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 57, 436
MluCI AATT 3 cut(s) 129, 630, 673
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 69, 207, 395
MroI TCCGGA 1 cut(s) 238
MseI TTAA 4 cut(s) 462, 537, 558, 672
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 4 cut(s) 13, 239, 273, 282
MspR9I CCNGG 3 cut(s) 14, 254, 456
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 2 cut(s) 254, 456
MvnI CGCG 2 cut(s) 248, 326
MwoI GCNNNNNNNGC 3 cut(s) 254, 403, 440
NciI CCSGG 1 cut(s) 14
NdeII GATC 2 cut(s) 22, 343
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 2 cut(s) 24, 564
NmuCI GTSAC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 480
PkrI GCNGC 4 cut(s) 160, 203, 206, 408
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 252, 454
PspGI CCWGG 2 cut(s) 252, 454
PspN4I GGNNCC 2 cut(s) 24, 564
PspPI GGNCC 4 cut(s) 15, 67, 250, 563
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
SaqAI TTAA 4 cut(s) 462, 537, 558, 672
SatI GCNGC 4 cut(s) 159, 202, 205, 407
Sau3AI GATC 2 cut(s) 22, 343
Sau96I GGNCC 4 cut(s) 15, 67, 250, 563
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 14, 254, 456
SduI GDGCHC 2 cut(s) 57, 436
SetI ASST 6 cut(s) 40, 146, 189, 218, 223, 366
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 1 cut(s) 544
SinI GGWCC 3 cut(s) 67, 250, 563
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 3 cut(s) 129, 630, 673
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 6 cut(s) 202, 205, 225, 248, 324, 407
SspI AATATT 1 cut(s) 466
SspMI CTAG 3 cut(s) 99, 209, 365
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 12, 252, 454
StyI CCWWGG 2 cut(s) 18, 427
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 121, 342
TasI AATT 3 cut(s) 129, 630, 673
TauI GCSGC 3 cut(s) 204, 207, 409
Tru1I TTAA 4 cut(s) 462, 537, 558, 672
Tru9I TTAA 4 cut(s) 462, 537, 558, 672
TscAI CASTG 2 cut(s) 187, 522
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 382, 515
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 2 cut(s) 187, 522
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 67, 250, 563
XspI CTAG 3 cut(s) 99, 209, 365
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.