Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

13496613 .. 13499469

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCACCCGTGCCAGGCCTCGGATCCAGTAGGGGTAGCTACTCTGTGTTCCGTGCTCCCTCAGTTGGACCATTCTCCACGACTGACTTTCTTCACTTCTATTCTTCGCCTTCGTCTCACTCGAACATCAATTTCAGACGCTACCTACTCTCTCCCTGCTGCCACACTCAGATACCCAATCACTGAGCTTCGTATTCCTCGCCGCCGCCTAGTGACGTCAGCTCCCGCCACTATGTTTCCGGAAAACGCGGTCCTGGCTGATATTTGCGCCACCGGAGTTGCCGGAGGTGTTGCTGTTTTCTTTCTTCTGTTGTGGGAACAAACCGCGAAGTTTGGGGTCTTCGATCAGAAACTCAACAGAAAGCTAGTGCATATCAGCATTGGCCTCGTTTTCATGCTTTGCTGGCCGCTATTCAGTTCGGGCTACCAAGGAGCACTTTTAGCATCACTTATTCCAGGCCTTAATATTATACGAATGCTTCTACTGGGACTCGGAATAATGAAAGACGAAGCAACAGTGAAGTCAATGAGCAGATTTAATGATTATAGGGAACTTCTTAAGGGACCACTCTACTATGCCACAACCATAACTTTGGCTTGTGTAGTCTATTGGAGAACTTCCCCCATTGCAATTGCAATAATATGCAATCTGTGTGCTGGAGATGGGTTAGCAGACGTTGTTGGTAGGCGTTTTGGTACTCAAAAACTTCCGTATAACAGAAACAAATCTATAGCTGGTAGTGTGGCAATGGCATCTGCTGGTTTTTTATCATCTATCGGGTACATGTACTATTTCTCCAAGTTTGGCTTTGTTGACAAGAGCTGGGATATGGTTTTGGGTTTTTTGGTTGTGTCTCTTGCCTCAGCACTGGTAGAATCACTTCCCATAAGCACCGTGCTTGATGACAACCTAACAGTTCCGCTTACTTCTACACTAGTTGGCAGTTTCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

34.71

Weight (kDa)

9.18

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccII	CGCG	2 cut(s)	248, 326
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	7 cut(s)	202, 205, 225, 248, 324, 407, 920
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	697, 782, 788
AfiI	CCNNNNNNNGG	3 cut(s)	13, 19, 64
AflII	CTTAAG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	783
AhlI	ACTAGT	1 cut(s)	934
AjnI	CCWGG	3 cut(s)	12, 252, 454
AluBI	AGCT	6 cut(s)	38, 187, 221, 364, 734, 822
AluI	AGCT	6 cut(s)	38, 187, 221, 364, 734, 822
Alw21I	GWGCWC	2 cut(s)	57, 436
Alw26I	GTCTC	2 cut(s)	119, 858
AlwI	GGATC	2 cut(s)	17, 30
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	4 cut(s)	15, 382, 404, 457
ApeKI	GCWGC	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	879
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	67, 250, 563
AvaII	GGWCC	3 cut(s)	67, 250, 563
BamHI	GGATCC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	864, 896
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	57, 436
BbvCI	CCTCAGC	1 cut(s)	862
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	3 cut(s)	14, 254, 456
BcoDI	GTCTC	2 cut(s)	119, 858
BcuI	ACTAGT	1 cut(s)	934
BfaI	CTAG	3 cut(s)	209, 365, 935
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	4 cut(s)	159, 202, 205, 407
BlsI	GCNGC	4 cut(s)	160, 203, 206, 408
Bme1390I	CCNGG	3 cut(s)	14, 254, 456
Bme18I	GGWCC	3 cut(s)	67, 250, 563
BmgT120I	GGNCC	3 cut(s)	67, 250, 563
BmiI	GGNNCC	2 cut(s)	24, 564
BmrFI	CCNGG	3 cut(s)	14, 254, 456
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	452, 761
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	862
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	18, 427
BsaWI	WCCGGW	2 cut(s)	238, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 779, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 19, 64
Bse1I	ACTGG	3 cut(s)	26, 489, 873
Bse3DI	GCAATG	2 cut(s)	624, 753
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	14, 254, 456
BseDI	CCNNGG	2 cut(s)	18, 427
BseLI	CCNNNNNNNGG	3 cut(s)	13, 19, 64
BseMI	GCAATG	2 cut(s)	624, 753
BseMII	CTCAG	4 cut(s)	74, 174, 181, 876
BseNI	ACTGG	3 cut(s)	26, 489, 873
BseXI	GCAGC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	822
Bsh1236I	CGCG	2 cut(s)	248, 326
BshFI	GGCC	4 cut(s)	17, 384, 406, 459
BsiHKAI	GWGCWC	2 cut(s)	57, 436
BsiSI	CCGG	3 cut(s)	239, 273, 282
BslFI	GGGAC	2 cut(s)	501, 576
BslI	CCNNNNNNNGG	3 cut(s)	13, 19, 64
BsmAI	GTCTC	2 cut(s)	119, 858
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	501, 576
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	4 cut(s)	17, 384, 406, 459
Bsp1286I	GDGCHC	2 cut(s)	57, 436
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	22, 343
BspACI	CCGC	7 cut(s)	202, 205, 225, 248, 324, 407, 920
BspANI	GGCC	4 cut(s)	17, 384, 406, 459
BspCNI	CTCAG	4 cut(s)	73, 175, 180, 875
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	248, 326
BspLI	GGNNCC	2 cut(s)	24, 564
BspPI	GGATC	2 cut(s)	17, 30
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	624, 753
BsrI	ACTGG	3 cut(s)	26, 489, 873
BssECI	CCNNGG	2 cut(s)	18, 427
BssMI	GATC	2 cut(s)	22, 343
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	3 cut(s)	14, 254, 456
Bst4CI	ACNGT	3 cut(s)	517, 895, 916
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	4 cut(s)	60, 167, 183, 862
BstFNI	CGCG	2 cut(s)	248, 326
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	25, 346
BstMAI	GTCTC	2 cut(s)	119, 858
BstMBI	GATC	2 cut(s)	22, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 403, 440
BstNI	CCWGG	3 cut(s)	14, 254, 456
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	3 cut(s)	12, 252, 454
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	2 cut(s)	248, 326
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	17, 384, 406, 459
BtsIMutI	CAGTG	3 cut(s)	180, 522, 866
Cac8I	GCNNGC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	67, 250, 563
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	696, 781, 787
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	394, 784
CviQI	GTAC	3 cut(s)	696, 781, 787
DdeI	CTNAG	4 cut(s)	60, 167, 183, 862
DpnI	GATC	2 cut(s)	24, 345
DpnII	GATC	2 cut(s)	22, 343
EaeI	YGGCCR	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	427
Eco147I	AGGCCT	2 cut(s)	17, 459
Eco47I	GGWCC	3 cut(s)	67, 250, 563
EcoRII	CCWGG	3 cut(s)	12, 252, 454
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	397, 787
FalI	AAGNNNNNCTT	4 cut(s)	420, 452, 791, 823
FaqI	GGGAC	2 cut(s)	501, 576
FatI	CATG	2 cut(s)	393, 783
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	159, 202, 205, 407
Fsp4HI	GCNGC	4 cut(s)	159, 202, 205, 407
FspBI	CTAG	3 cut(s)	209, 365, 935
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	159, 202, 205, 407
GsaI	CCCAGC	1 cut(s)	826
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	17, 384, 406, 459
HapII	CCGG	3 cut(s)	239, 273, 282
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	397, 787
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	2 cut(s)	489, 875
HpaII	CCGG	3 cut(s)	239, 273, 282
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	6 cut(s)	22, 136, 170, 348, 494, 956
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	814
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	517, 895, 916
HpyCH4IV	ACGT	2 cut(s)	215, 675
HpyCH4V	TGCA	5 cut(s)	4, 370, 629, 635, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 403, 440
HpyF3I	CTNAG	4 cut(s)	60, 167, 183, 862
HpySE526I	ACGT	2 cut(s)	215, 675
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	397, 787
HspAI	GCGC	1 cut(s)	267
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	22, 343
LmnI	GCTCC	3 cut(s)	60, 226, 431
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	2 cut(s)	452, 761
MaeI	CTAG	3 cut(s)	209, 365, 935
MaeII	ACGT	2 cut(s)	215, 675
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	24, 345
MboI	GATC	2 cut(s)	22, 343
MboII	GAAGA	4 cut(s)	82, 95, 296, 331
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	57, 436
MluCI	AATT	2 cut(s)	129, 630
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	28, 69, 207, 278, 395, 871
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	879
MseI	TTAA	3 cut(s)	462, 537, 558
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	3 cut(s)	239, 273, 282
MspR9I	CCNGG	3 cut(s)	14, 254, 456
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	3 cut(s)	14, 254, 456
MvnI	CGCG	2 cut(s)	248, 326
MwoI	GCNNNNNNNGC	3 cut(s)	254, 403, 440
NdeII	GATC	2 cut(s)	22, 343
NlaIII	CATG	2 cut(s)	397, 787
NlaIV	GGNNCC	2 cut(s)	24, 564
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	787
PceI	AGGCCT	2 cut(s)	17, 459
PciI	ACATGT	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	160, 203, 206, 408
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PscI	ACATGT	1 cut(s)	783
Psp6I	CCWGG	3 cut(s)	12, 252, 454
PspFI	CCCAGC	1 cut(s)	822
PspGI	CCWGG	3 cut(s)	12, 252, 454
PspN4I	GGNNCC	2 cut(s)	24, 564
PspPI	GGNCC	3 cut(s)	67, 250, 563
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	697, 782, 788
RsaNI	GTAC	3 cut(s)	696, 781, 787
SaqAI	TTAA	3 cut(s)	462, 537, 558
SatI	GCNGC	4 cut(s)	159, 202, 205, 407
Sau3AI	GATC	2 cut(s)	22, 343
Sau96I	GGNCC	3 cut(s)	67, 250, 563
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	3 cut(s)	14, 254, 456
SduI	GDGCHC	2 cut(s)	57, 436
SfaNI	GCATC	2 cut(s)	452, 761
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	3 cut(s)	67, 250, 563
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	934
Sse9I	AATT	2 cut(s)	129, 630
SseBI	AGGCCT	2 cut(s)	17, 459
SsiI	CCGC	7 cut(s)	202, 205, 225, 248, 324, 407, 920
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	3 cut(s)	209, 365, 935
StuI	AGGCCT	2 cut(s)	17, 459
StyD4I	CCNGG	3 cut(s)	12, 252, 454
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	517, 895, 916
TaiI	ACGT	2 cut(s)	218, 678
TaqI	TCGA	2 cut(s)	121, 342
TasI	AATT	2 cut(s)	129, 630
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	3 cut(s)	204, 207, 409
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	3 cut(s)	462, 537, 558
Tru9I	TTAA	3 cut(s)	462, 537, 558
TscAI	CASTG	3 cut(s)	187, 522, 873
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	382, 515, 937
TspGWI	ACGGA	2 cut(s)	40, 699
TspRI	CASTG	3 cut(s)	187, 522, 873
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	67, 250, 563
XceI	RCATGY	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	3 cut(s)	209, 365, 935
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.