Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011208

Physical Location & Seq

Genomic Coordinates Forward (+)

3932206 .. 3935074

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTTCCAGAAAACCCTGTGGTTGCTGACATTTGCGCCGCCTTAATTGCAGGCGGCGTTGCTCTTTTCTTCCTGCTGTTGTGGGAAGAAACCGCCAAGCGTGGGATCTTCGACCAGAATCTCAATAGAAAGCTTGTGCACGTGAGCATTGGCCTAGTTTTCATGCTTTGCTGGCCACTGTTCAGTTCTGGCCTTCAAGGAGCATTTTTAGCATCTCTTACTCCAGGCCTCAATATCTTCCGAATGCTTCTATTGGGACTTGGAATATGGAAAGATGAAGCCACAGTGAAATCAATGAGCAGATACGGAGACTACAGGGAACTTCTCAAGGGACCACTGTACTATGCCACGACAATAACTTTGGCTTGTCTAATCTATTGGAGAACTTCTCCTATTGCAATTGCTCTTATATGCAATTTGTGCGCTGGAGATGGTTTAGCTGACATTGTTGGTAGGCGGTTTGGTACTCAGAAAATTCCATACAACAGAAACAAATCCATAGCTGGTAGTGTTGCAATGGCATCTGCTGGTTTTTTAACATCTATCGGGTACATGCACTATTTCTCCAGCTTCGGGTTTGTTCAGGAAAGTTGGGGCATGGTTTTGGGTTTCTTGGTTGTGTCTCTTGCCTCGGCACTGGTAGAATCCCTCCCCATAAGCACTGAGCTTGACGACAACCTAACAGTTTCACTTACTTCTGTGTTAGTTGGCAGTTTGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006066 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0016093 GO:0016301 GO:0016310 GO:0016487 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017144 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0034308 GO:0042221 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052668 GO:0052669 GO:0052670 GO:0052671 GO:0052673 GO:0061458 GO:0071704 GO:0090567 GO:0097305 GO:0099402 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.17

Weight (kDa)

6.71

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58560
fragaria_vesca	FvH4_3g39170 FvH4_3g39170 FvH4_3g39170 FvH4_3g39170
malus_domestica	MD03G1062900.v1.1 MD11G1066300.v1.1
prunus_persica	Prupe.6G052700_v2.0.a1
pyrus_communis	pycom03g05040 pycom11g05610
rosa_chinensis	RchiOBHm_Chr5g0070611
rosa_laevigata	RLG00000036142
rosa_multiflora	Rmu_sc0002443.1_g000007
rosa_roxburghii	Rroxscaffold_1G00010630
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5AG462400 Rh5BG480600 Rh5CG504900 Rh5DG492800
rosa_wichuraiana	Rw5G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	39, 54, 93, 457
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	142
AfaI	GTAC	3 cut(s)	341, 466, 551
AfiI	CCNNNNNNNGG	2 cut(s)	102, 573
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	5 cut(s)	133, 440, 503, 570, 667
AluI	AGCT	5 cut(s)	133, 440, 503, 570, 667
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	303, 627
Alw44I	GTGCAC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	4 cut(s)	151, 173, 190, 226
ApaLI	GTGCAC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
AspLEI	GCGC	2 cut(s)	38, 425
AspS9I	GGNCC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	303, 627
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	313
BisI	GCNGC	2 cut(s)	39, 55
BlsI	GCNGC	2 cut(s)	40, 56
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	221, 530
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	3 cut(s)	207, 447, 550
BpuEI	CTTGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 573
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	102, 573
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	482, 654
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	141
BshFI	GGCC	4 cut(s)	153, 175, 192, 228
BsiHKAI	GWGCWC	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	270, 345
BslI	CCNNNNNNNGG	2 cut(s)	102, 573
BsmAI	GTCTC	2 cut(s)	303, 627
BsmFI	GGGAC	2 cut(s)	270, 345
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	4 cut(s)	153, 175, 192, 228
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	4 cut(s)	39, 54, 93, 457
BspANI	GGCC	4 cut(s)	153, 175, 192, 228
BspCNI	CTCAG	2 cut(s)	481, 655
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	4 cut(s)	180, 286, 339, 685
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	52, 173
BstDEI	CTNAG	2 cut(s)	468, 663
BstHHI	GCGC	2 cut(s)	38, 425
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	303, 627
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 172, 209, 420
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	153, 175, 192, 228
BtsIMutI	CAGTG	5 cut(s)	176, 291, 335, 635, 660
Cac8I	GCNNGC	2 cut(s)	52, 173
CfoI	GCGC	2 cut(s)	38, 425
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	340, 465, 550
CviAII	CATG	3 cut(s)	163, 553, 598
CviQI	GTAC	3 cut(s)	340, 465, 550
DdeI	CTNAG	2 cut(s)	468, 663
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	3 cut(s)	166, 556, 601
FaqI	GGGAC	2 cut(s)	270, 345
FatI	CATG	3 cut(s)	162, 552, 597
Fnu4HI	GCNGC	2 cut(s)	39, 55
Fsp4HI	GCNGC	2 cut(s)	39, 55
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	37, 424
GluI	GCNGC	2 cut(s)	39, 55
GsuI	CTGGAG	3 cut(s)	207, 447, 550
HaeIII	GGCC	4 cut(s)	153, 175, 192, 228
HhaI	GCGC	2 cut(s)	38, 425
Hin1II	CATG	3 cut(s)	166, 556, 601
Hin6I	GCGC	2 cut(s)	36, 423
HinP1I	GCGC	2 cut(s)	36, 423
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	118, 644
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	242, 471, 725
Hpy188III	TCNNGA	2 cut(s)	8, 584
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	4 cut(s)	180, 286, 339, 685
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	6 cut(s)	50, 139, 398, 414, 515, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 172, 209, 420
HpyF3I	CTNAG	2 cut(s)	468, 663
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	166, 556, 601
HspAI	GCGC	2 cut(s)	36, 423
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	2 cut(s)	221, 530
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	61, 98, 100, 229
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	4 cut(s)	45, 399, 415, 474
MluNI	TGGCCA	1 cut(s)	175
MnlI	CCTC	3 cut(s)	239, 640, 659
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	2 cut(s)	44, 536
Msp20I	TGGCCA	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	47, 172, 209, 420
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	3 cut(s)	166, 556, 601
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	611
NspI	RCATGY	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	118, 644
PkrI	GCNGC	2 cut(s)	40, 56
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	223
PspCI	CACGTG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	3 cut(s)	341, 466, 551
RsaNI	GTAC	3 cut(s)	340, 465, 550
SaqAI	TTAA	2 cut(s)	44, 536
SatI	GCNGC	2 cut(s)	39, 55
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	7 cut(s)	135, 144, 442, 505, 572, 669, 681
SfaNI	GCATC	2 cut(s)	221, 530
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	45, 399, 415, 474
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	4 cut(s)	39, 54, 93, 457
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	4 cut(s)	180, 286, 339, 685
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	45, 399, 415, 474
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	41, 57
TfiI	GAWTC	2 cut(s)	118, 644
Tru1I	TTAA	2 cut(s)	44, 536
Tru9I	TTAA	2 cut(s)	44, 536
TscAI	CASTG	5 cut(s)	183, 291, 342, 642, 667
TspDTI	ATGAA	2 cut(s)	151, 291
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	5 cut(s)	183, 291, 342, 642, 667
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.