AT5G59610

dnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011368
Physical Location & Seq
Forward (+)
24010900 .. 24015129
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59610.3

Sequence Viewer

Length: 807 bp
ATGTATGCAACATCTTCGATTCTGTCTCCAACACCACAAAGTTTCTTCCTTTCGCATCATCTTCCTCCAATTTCGTTCCTTTATCGGATAAATTTTCTGGGTTTTCCTGTAACAAGTTGCTGCTATGGTGGAGACATTGGTCTCGCTTCGTTATATAAACGACGGAGTAGTATACAAAGACGGAGAAATCGAATCTTCGTAACCAGAGCTAGATCCTCTCCTTACGAGATTCTTGGTGTGTCTCCATCAGCGACTCCTCAAGATATAAAAAGAGCTTATCGTAAACTTGCTCTGAAATATCACCCAGATGTCAATAAAGAGGCAAATGCGCAAGAGAAGTTTTTGAAAATAAAGCATGCATACACTACTCTGATAAACTCTGACTCACGGCGTAAGTACGGTTCAGATAGTCGTGCGACTGGTTCTTCGACGGGTCAAACAAGTCGAAAAGGCAACAGTCAAGTCGAGGAAGATTTCTATGGACTTGGGGATTTCTTCAAAGATCTTCAAGAAGAGTATAAAAACTGGGAAGCTAGTGCGTCCTCACAAGGAAAACCGAAAAGTCTTTGGGAAGAACTATCGGAAATTGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTTAACATTAGCGACGAAGACAATGAAGGATCAAGCAAAAACGGAGAAAGATTTGATTTTGAAGAAGGCTCAACAGAGAAATCTTCCGGGAAGAATAATAGTAGCACAAAGAATAGTATAGAAGACAATATTGATGAGATCGAAGCAACTCTTGCTCAATTGAAGAAAGATCTTGGCTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

268

Amino Acids

30.26

Weight (kDa)

6.17

Isoelectric Point (pI)

66.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 133 8.9e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
AccI GTMKAC 1 cut(s) 172
AclWI GGATC 2 cut(s) 207, 658
AcsI RAATTY 2 cut(s) 91, 596
AfaI GTAC 1 cut(s) 398
AgsI TTSAA 5 cut(s) 346, 499, 509, 683, 784
AluBI AGCT 3 cut(s) 209, 275, 533
AluI AGCT 3 cut(s) 209, 275, 533
Alw26I GTCTC 4 cut(s) 30, 126, 146, 246
AlwI GGATC 2 cut(s) 207, 658
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 2 cut(s) 91, 596
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspLEI GCGC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 709
AsuHPI GGTGA 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 645, 750
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 4 cut(s) 30, 126, 146, 246
BfaI CTAG 2 cut(s) 210, 534
BglII AGATCT 2 cut(s) 502, 790
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 709
BmrFI CCNGG 1 cut(s) 709
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 535
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 645, 750
BpuEI CTTGAG 2 cut(s) 243, 632
BpuMI CCSGG 1 cut(s) 709
BsaI GGTCTC 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 424, 530
BseNI ACTGG 2 cut(s) 424, 530
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 708
BsmAI GTCTC 4 cut(s) 30, 126, 146, 246
Bso31I GGTCTC 1 cut(s) 146
Bsp143I GATC 5 cut(s) 212, 502, 650, 759, 790
BspPI GGATC 2 cut(s) 207, 658
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 424, 530
BssMI GATC 5 cut(s) 212, 502, 650, 759, 790
BssNAI GTATAC 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 401, 458
Bst6I CTCTTC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 357, 800
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 5 cut(s) 215, 505, 653, 762, 793
BstMAI GTCTC 4 cut(s) 30, 126, 146, 246
BstMBI GATC 5 cut(s) 212, 502, 650, 759, 790
BstMWI GCNNNNNNNGC 1 cut(s) 773
BstNSI RCATGY 1 cut(s) 359
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 707
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 2 cut(s) 645, 750
BstX2I RGATCY 3 cut(s) 212, 502, 790
BstYI RGATCY 3 cut(s) 212, 502, 790
BstZ17I GTATAC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 357, 800
CfoI GCGC 1 cut(s) 331
CseI GACGC 1 cut(s) 528
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 356
CviJI RGCY 5 cut(s) 209, 275, 533, 690, 798
CviKI_1 RGCY 5 cut(s) 209, 275, 533, 690, 798
CviQI GTAC 1 cut(s) 397
DpnI GATC 5 cut(s) 214, 504, 652, 761, 792
DpnII GATC 5 cut(s) 212, 502, 650, 759, 790
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 361
FaeI CATG 1 cut(s) 359
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FatI CATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 2 cut(s) 210, 534
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 121
HapII CCGG 1 cut(s) 708
HgaI GACGC 1 cut(s) 528
HhaI GCGC 1 cut(s) 331
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 5 cut(s) 19, 192, 229, 253, 383
HpaII CCGG 1 cut(s) 708
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 173, 284
Hpy188I TCNGA 6 cut(s) 87, 294, 372, 382, 406, 583
Hpy188III TCNNGA 3 cut(s) 260, 509, 611
Hpy8I GTNNAC 2 cut(s) 173, 284
Hpy99I CGWCG 3 cut(s) 165, 433, 638
HpyAV CCTTC 2 cut(s) 641, 680
HpyCH4III ACNGT 2 cut(s) 401, 458
HpyCH4V TGCA 3 cut(s) 8, 359, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 773
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 5 cut(s) 212, 502, 650, 759, 790
LpnPI CCDG 7 cut(s) 83, 120, 217, 318, 405, 511, 721
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 210, 534
MaeIII GTNAC 2 cut(s) 109, 199
MalI GATC 5 cut(s) 214, 504, 652, 761, 792
MboI GATC 5 cut(s) 212, 502, 650, 759, 790
MfeI CAATTG 1 cut(s) 779
MflI RGATCY 3 cut(s) 212, 502, 790
MluCI AATT 5 cut(s) 69, 91, 585, 596, 779
MlyI GAGTC 2 cut(s) 247, 377
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 6 cut(s) 75, 226, 267, 313, 460, 553
Mph1103I ATGCAT 1 cut(s) 361
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 1 cut(s) 709
MunI CAATTG 1 cut(s) 779
MwoI GCNNNNNNNGC 1 cut(s) 773
NciI CCSGG 1 cut(s) 709
NdeII GATC 5 cut(s) 212, 502, 650, 759, 790
NlaIII CATG 1 cut(s) 359
NsbI TGCGCA 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 359
PaeI GCATGC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 3 cut(s) 19, 192, 229
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 2 cut(s) 247, 377
PpsI GAGTC 2 cut(s) 247, 377
PshAI GACNNNNGTC 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PsuI RGATCY 3 cut(s) 212, 502, 790
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 5 cut(s) 212, 502, 650, 759, 790
SchI GAGTC 2 cut(s) 247, 377
ScrFI CCNGG 1 cut(s) 709
SetI ASST 3 cut(s) 211, 277, 535
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 258, 611
SmoI CTYRAG 2 cut(s) 258, 611
SphI GCATGC 1 cut(s) 359
Sse9I AATT 5 cut(s) 69, 91, 585, 596, 779
SspI AATATT 1 cut(s) 751
SspMI CTAG 2 cut(s) 210, 534
StyD4I CCNGG 1 cut(s) 707
TaaI ACNGT 2 cut(s) 401, 458
TaqI TCGA 6 cut(s) 17, 190, 428, 445, 465, 762
TasI AATT 5 cut(s) 69, 91, 585, 596, 779
TfiI GAWTC 3 cut(s) 19, 192, 229
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 3 cut(s) 178, 196, 678
XapI RAATTY 2 cut(s) 91, 596
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 2 cut(s) 210, 534
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.