pycom05g24500

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011368
Physical Location & Seq
Reverse (-)
26064539 .. 26064994
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24500.1

Sequence Viewer

Length: 456 bp
ATGATATGCTGCCGCCGCCTCACAAATTATTCCCCGACGAACGATGCATGGATTGGCTCTTCTGCCTTAACTCCTCCACACACCCTCTGTTTCTTCAACCTTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCTCAAGATCTTTGCTTTTCCTGCAAACCCGACCCGAATCTTCGAAACCCATTTTCAGATATGCCTCGAAACCCGTAACCAGGTTCTCAAATTTGAACCATAAACGACGACGTTTTGCTACCATTTTGAGAGCGAGTCGCAGAAAGTCTCCTTACCAGGTTCTGGGCGTGTCTTCTTCTACAACTGATGTCGAGATTAAAAGGGCTTATCGCAAACTTGCTCTTAAGTATCACCCCGATGTTAACAAAGAGGTAATTAACAGGTTACAGATTCAAACCCATAATTTATTTTTTGTGTGGATGTGGAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

152

Amino Acids

17.43

Weight (kDa)

10.65

Isoelectric Point (pI)

74.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 98 - 130 6.6e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 304
AciI CCGC 2 cut(s) 13, 16
AcsI RAATTY 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 222, 304
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 4 cut(s) 97, 141, 238, 416
AjnI CCWGG 2 cut(s) 221, 297
Alw26I GTCTC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 306
BciT130I CCWGG 2 cut(s) 223, 299
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 454
BfrI CTTAAG 1 cut(s) 365
BglII AGATCT 1 cut(s) 149
BisI GCNGC 3 cut(s) 10, 13, 16
BlsI GCNGC 3 cut(s) 11, 14, 17
Bme1390I CCNGG 2 cut(s) 223, 299
BmrFI CCNGG 2 cut(s) 223, 299
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 304
BseBI CCWGG 2 cut(s) 223, 299
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 222, 304
BseRI GAGGAG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 222, 304
BsmAI GTCTC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 2 cut(s) 13, 16
BspQI GCTCTTC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 365
BssMI GATC 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 223, 299
Bst6I CTCTTC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 185
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 15, 163
BstNI CCWGG 2 cut(s) 223, 299
BstSCI CCNGG 2 cut(s) 221, 297
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BtsCI GGATG 1 cut(s) 447
CaiI CAGNNNCTG 1 cut(s) 304
CsiI ACCWGGT 2 cut(s) 221, 297
CviAII CATG 1 cut(s) 48
CviJI RGCY 2 cut(s) 57, 347
CviKI_1 RGCY 2 cut(s) 57, 347
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 221, 297
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 1 cut(s) 51
FaiI YATR 5 cut(s) 7, 49, 204, 243, 423
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 10, 13, 16
Fsp4HI GCNGC 3 cut(s) 10, 13, 16
FspBI CTAG 1 cut(s) 454
GluI GCNGC 3 cut(s) 10, 13, 16
Hin1II CATG 1 cut(s) 51
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 3 cut(s) 179, 277, 412
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 2 cut(s) 147, 334
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 3 cut(s) 40, 252, 255
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 47, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 163
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 1 cut(s) 149
LguI GCTCTTC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 176, 208, 235, 284, 290, 311, 388
LweI GCATC 1 cut(s) 34
MabI ACCWGGT 2 cut(s) 221, 297
MaeI CTAG 1 cut(s) 454
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 217, 405
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MflI RGATCY 1 cut(s) 149
MluCI AATT 5 cut(s) 25, 232, 396, 424, 448
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 6 cut(s) 29, 84, 95, 154, 217, 385
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 5 cut(s) 68, 339, 366, 384, 399
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 223, 299
MvaI CCWGG 2 cut(s) 223, 299
MwoI GCNNNNNNNGC 2 cut(s) 15, 163
NdeII GATC 1 cut(s) 149
NlaIII CATG 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 49
NspV TTCGAA 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 179, 412
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 3 cut(s) 11, 14, 17
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 221, 297
PspGI CCWGG 2 cut(s) 221, 297
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 5 cut(s) 68, 339, 366, 384, 399
SatI GCNGC 3 cut(s) 10, 13, 16
Sau3AI GATC 1 cut(s) 149
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 223, 299
SetI ASST 7 cut(s) 102, 146, 227, 256, 303, 396, 407
SexAI ACCWGGT 2 cut(s) 221, 297
SfaNI GCATC 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 145, 365
SmoI CTYRAG 2 cut(s) 145, 365
Sse9I AATT 5 cut(s) 25, 232, 396, 424, 448
SsiI CCGC 2 cut(s) 13, 16
SspMI CTAG 1 cut(s) 454
StyD4I CCNGG 2 cut(s) 221, 297
TaiI ACGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 185, 209, 333
TasI AATT 5 cut(s) 25, 232, 396, 424, 448
TauI GCSGC 2 cut(s) 15, 18
TfiI GAWTC 2 cut(s) 179, 412
Tru1I TTAA 5 cut(s) 68, 339, 366, 384, 399
Tru9I TTAA 5 cut(s) 68, 339, 366, 384, 399
TseI GCWGC 1 cut(s) 9
Van91I CCANNNNNTGG 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 365
XapI RAATTY 1 cut(s) 232
XspI CTAG 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.