Rh5AG435500

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011368
Physical Location & Seq
Forward (+)
74888578 .. 74890715
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG435500.1

Sequence Viewer

Length: 879 bp
ATGCATGGTTTTCTGGCTCTACTGCCTCTAACACCACCACACCTCTATTTCTTCAACCTCTCTTCTTCTTCTTCTTCAAGATCTCTTCTTTACCTGCAAATCAGACCCAAATCTTCAACACCCATTTTGGGATACCCCTCAAAAACCAACCTGAATCTCGTCGTGTTCTCCTCCCACTCTTCGAGTTTCTCGAATTTCAATAGCAAACGACGACGCTTTGTTACGAGAGCGAGCCGCAGGGAGTCCCCGTACCAAGTTTTGGGGGTGTCTCCTTCTGCTACTGATGTCGAGATCAAAAAGGCGTATCGGAAACTTGCCCTCAAGTATCACCCAGATGTTAATAAAGAGCCAAATGCGCAGGAGAAATTTATGAGGATTAAACATGCCTATAGTACATTGCTGAATTCAAAATCTCGGGGTAATTATGACTCTAATTATGGATCTGACTATTCCTATTCTGGTTCTCGAAGGAGCCAAAGCAAGAAGGCTCAAGATGAAGAAGAGTTTTATGGATTCGGTAATTTTGTGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAAGATATTCAAGCGGAATTCCAGAACTGGGAAGAAAGTGCTTCTACACAAGGAAAGCCAAGGAGTCTGTGGGAGGAATTGTCGGAAATTGGAGAAGAATTTGTAGAATTTCTCGAGAAAGAACTCAACATAACGGATCCAGAGGTTGGATCAGATAACATCAATGAAGGGCCTGAGAAGGGTCCATTCAGAAATTCTGGGAAAGAGACAACAGAAAGTGCAAGTAAAAAGGAAGCCAGTATGGGGGCTAGTATTGAAGAGAATATTGATGAGATAGAAGCTACTCTTGCTCAGTTGAAAAAGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

292

Amino Acids

33.12

Weight (kDa)

6.06

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 83 - 143 1.8e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 102
AccB7I CCANNNNNTGG 2 cut(s) 259, 707
AciI CCGC 2 cut(s) 235, 575
AclWI GGATC 4 cut(s) 448, 692, 705, 718
AcsI RAATTY 7 cut(s) 193, 365, 403, 578, 659, 668, 754
AfaI GTAC 2 cut(s) 251, 394
AfiI CCNNNNNNNGG 6 cut(s) 128, 259, 589, 707, 740, 804
AgsI TTSAA 9 cut(s) 55, 78, 117, 199, 408, 539, 572, 818, 859
AjuI GAANNNNNNNTTGG 1 cut(s) 851
AluBI AGCT 1 cut(s) 842
AluI AGCT 1 cut(s) 842
Alw26I GTCTC 2 cut(s) 273, 761
AlwI GGATC 4 cut(s) 448, 692, 705, 718
Ama87I CYCGRG 2 cut(s) 414, 674
AoxI GGCC 1 cut(s) 731
ApoI RAATTY 7 cut(s) 193, 365, 403, 578, 659, 668, 754
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 731, 743
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 2 cut(s) 414, 674
AvaII GGWCC 1 cut(s) 743
BamHI GGATCC 1 cut(s) 697
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 273, 761
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 102
BfuI GTATCC 1 cut(s) 125
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 2 cut(s) 414, 674
BmgT120I GGNCC 2 cut(s) 731, 743
BmiI GGNNCC 3 cut(s) 473, 699, 744
BmrI ACTGGG 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 598
BpuEI CTTGAG 2 cut(s) 305, 474
BsaJI CCNNGG 1 cut(s) 620
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 626, 656
Bsc4I CCNNNNNNNGG 6 cut(s) 128, 259, 589, 707, 740, 804
Bse1I ACTGG 2 cut(s) 593, 798
Bse3DI GCAATG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 6 cut(s) 128, 259, 589, 707, 740, 804
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 726, 866
BseNI ACTGG 2 cut(s) 593, 798
BseRI GAGGAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 733
BsiHKCI CYCGRG 2 cut(s) 414, 674
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 6 cut(s) 128, 259, 589, 707, 740, 804
BsmAI GTCTC 2 cut(s) 273, 761
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 733
BsoBI CYCGRG 2 cut(s) 414, 674
Bsp143I GATC 5 cut(s) 80, 291, 440, 697, 710
BspACI CCGC 2 cut(s) 235, 575
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 2 cut(s) 727, 865
BspLI GGNNCC 3 cut(s) 473, 699, 744
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 4 cut(s) 448, 692, 705, 718
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 2 cut(s) 593, 798
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 5 cut(s) 80, 291, 440, 697, 710
BssT1I CCWWGG 1 cut(s) 620
Bst6I CTCTTC 5 cut(s) 67, 90, 184, 495, 813
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 735, 852
BstF5I GGATG 1 cut(s) 538
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 5 cut(s) 83, 294, 443, 700, 713
BstMAI GTCTC 2 cut(s) 273, 761
BstMBI GATC 5 cut(s) 80, 291, 440, 697, 710
BstMWI GCNNNNNNNGC 2 cut(s) 355, 848
BstNSI RCATGY 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 388
BstX2I RGATCY 3 cut(s) 80, 440, 697
BstYI RGATCY 3 cut(s) 80, 440, 697
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 733
BtsCI GGATG 1 cut(s) 538
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 731, 743
CseI GACGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 250, 393
CviAII CATG 2 cut(s) 5, 383
CviQI GTAC 2 cut(s) 250, 393
DdeI CTNAG 2 cut(s) 735, 852
DpnI GATC 5 cut(s) 82, 293, 442, 699, 712
DpnII GATC 5 cut(s) 80, 291, 440, 697, 710
DraI TTTAAA 1 cut(s) 562
Eam1104I CTCTTC 5 cut(s) 67, 90, 184, 495, 813
EarI CTCTTC 5 cut(s) 67, 90, 184, 495, 813
Eco130I CCWWGG 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 743
Eco88I CYCGRG 2 cut(s) 414, 674
EcoO109I RGGNCCY 1 cut(s) 731
EcoRI GAATTC 2 cut(s) 403, 578
EcoT14I CCWWGG 1 cut(s) 620
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 2 cut(s) 8, 386
FaiI YATR 9 cut(s) 6, 371, 384, 390, 426, 438, 510, 692, 803
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 4, 382
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 810
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 733
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 8, 386
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 5 cut(s) 154, 242, 428, 513, 625
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 6 cut(s) 104, 309, 445, 646, 715, 752
Hpy188III TCNNGA 9 cut(s) 78, 190, 289, 465, 491, 583, 674, 676, 701
Hpy99I CGWCG 3 cut(s) 164, 213, 216
HpyAV CCTTC 5 cut(s) 282, 462, 478, 722, 733
HpyCH4V TGCA 3 cut(s) 4, 97, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 848
HpyF3I CTNAG 2 cut(s) 735, 852
Hsp92II CATG 2 cut(s) 8, 386
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 5 cut(s) 80, 291, 440, 697, 710
LmnI GCTCC 1 cut(s) 471
MaeI CTAG 1 cut(s) 810
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 82, 293, 442, 699, 712
MboI GATC 5 cut(s) 80, 291, 440, 697, 710
MflI RGATCY 3 cut(s) 80, 440, 697
MlyI GAGTC 3 cut(s) 251, 422, 634
MmeI TCCRAC 2 cut(s) 624, 688
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 339, 378, 561
MslI CAYNNNNRTG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 355, 848
NdeII GATC 5 cut(s) 80, 291, 440, 697, 710
NlaIII CATG 2 cut(s) 8, 386
NlaIV GGNNCC 3 cut(s) 473, 699, 744
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 674
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 2 cut(s) 154, 513
PflMI CCANNNNNTGG 2 cut(s) 259, 707
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 3 cut(s) 250, 422, 633
PpsI GAGTC 3 cut(s) 250, 422, 633
PspN4I GGNNCC 3 cut(s) 473, 699, 744
PspPI GGNCC 2 cut(s) 731, 743
PsuI RGATCY 3 cut(s) 80, 440, 697
RsaI GTAC 2 cut(s) 251, 394
RsaNI GTAC 2 cut(s) 250, 393
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 339, 378, 561
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 5 cut(s) 80, 291, 440, 697, 710
Sau96I GGNCC 2 cut(s) 731, 743
SchI GAGTC 3 cut(s) 251, 422, 634
SetI ASST 6 cut(s) 45, 60, 96, 153, 708, 844
SfcI CTRYAG 1 cut(s) 388
Sfr274I CTCGAG 1 cut(s) 674
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 320, 489, 674
SmoI CTYRAG 3 cut(s) 320, 489, 674
SsiI CCGC 2 cut(s) 235, 575
SspI AATATT 1 cut(s) 826
SspMI CTAG 1 cut(s) 810
StyI CCWWGG 1 cut(s) 620
TaqI TCGA 5 cut(s) 182, 191, 288, 466, 675
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 2 cut(s) 154, 513
Tru1I TTAA 3 cut(s) 339, 378, 561
Tru9I TTAA 3 cut(s) 339, 378, 561
TspDTI ATGAA 2 cut(s) 510, 741
TspGWI ACGGA 1 cut(s) 710
Van91I CCANNNNNTGG 2 cut(s) 259, 707
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 7 cut(s) 193, 365, 403, 578, 659, 668, 754
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XhoI CTCGAG 1 cut(s) 674
XspI CTAG 1 cut(s) 810
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.