Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011368

Physical Location & Seq

Genomic Coordinates Reverse (-)

4866212 .. 4869040

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCATGGATTGGCTCTGCCTCTGACACCACATCCACAGCCACACACCCTCTTCTTCTTCAACCTCTCTTCGACTTCAAGATCTCTGCTTTACCTACAAAACCGACCCAAAACTTCGATACCCATTTTCGGAAAAGCTGACTTGAACCTCCTCGTGTTCTCTTCTCGGTCTTCCACTCCAAGTTTCTCCAATTTCAATAGGAAAAGAGGGCGCTTTGTTACCCTTCTGAGAGCGAGCCGCAGAGAGTCTCCTTACCAAGTTTTGGGTGTGTCTCCTTCTGCAACTAACGATGAGATCAAAAGGGCTTATCGGAAACTTGCTCTTAAGTATCATCCTGATGTTAATAAGGAGGCAAATGCCCAGGAGAAATTTATGAGGATTAAACATGCCTATAATACATTGTTGAGTTCTAAATCTCGGGGAAAATATGACTCGAATTTCGGATCTGACTATTCCTATTCTTCTTCTCAAAGAAGCCAAAGTAAGAACTCTCAAGATGAAGAAGAGTTTTATGGATTCGGTAATTTTTTGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAAGACCTTCAAGAAGAATTCCAGAACTGGGAAGCAAGCGCTTCTTCACAAGGAAAACCGAAGAGTCTATGGGAGGAATTGGGCGAGATTGGAGAAGAATTTGTGGAATTTCTTGAGAAAGAACTCAACATAACGGATCCAGAAGTTGAAGAAAATAACAATAAGGAAGGCAATCCTTTCAGAAGTTCTGGGACACAGAGAACTGGAAGTGGTAATCAAAATGAAGCCGGTAAGGGGAGCAGCATCGAGGAGAATATTGACGAGATAGAAGCTACTCTTGCCCAGTTAAAAAAGGAATTGGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

291

Amino Acids

32.96

Weight (kDa)

6.05

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca	FvH4_3g36901
malus_domestica	MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica	Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis	pycom05g24500
rosa_chinensis	RchiOBHm_Chr5g0066291
rosa_laevigata	RLG00000035848
rosa_multiflora	Rmu_sc0006887.1_g000014
rosa_rugosa	Rorug05G0376900
rosa_samantha	Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana	Rw5G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	3 cut(s)	451, 695, 708
AcsI	RAATTY	5 cut(s)	368, 436, 581, 662, 671
AfeI	AGCGCT	1 cut(s)	604
AfiI	CCNNNNNNNGG	4 cut(s)	128, 262, 592, 798
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	7 cut(s)	61, 78, 145, 196, 542, 575, 713
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	137, 836
AluI	AGCT	2 cut(s)	137, 836
Alw26I	GTCTC	2 cut(s)	252, 276
AlwI	GGATC	3 cut(s)	451, 695, 708
Ama87I	CYCGRG	1 cut(s)	417
Aor51HI	AGCGCT	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	804
ApoI	RAATTY	5 cut(s)	368, 436, 581, 662, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspLEI	GCGC	2 cut(s)	213, 605
AvaI	CYCGRG	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	816
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	252, 276
BfoI	RGCGCY	2 cut(s)	214, 606
BfrI	CTTAAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	2 cut(s)	238, 805
BlsI	GCNGC	2 cut(s)	239, 806
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	2 cut(s)	601, 841
BmsI	GCATC	1 cut(s)	816
BmuI	ACTGGG	2 cut(s)	601, 841
BpiI	GAAGAC	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	477, 698
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 262, 592, 798
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	3 cut(s)	596, 772, 847
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	31, 331, 541
BseLI	CCNNNNNNNGG	4 cut(s)	128, 262, 592, 798
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	3 cut(s)	596, 772, 847
BseRI	GAGGAG	2 cut(s)	140, 827
BseXI	GCAGC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	4 cut(s)	128, 262, 592, 798
BsmAI	GTCTC	2 cut(s)	252, 276
BsmFI	GGGAC	1 cut(s)	769
BsoBI	CYCGRG	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	80, 294, 443, 700
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	702
BspPI	GGATC	3 cut(s)	451, 695, 708
BspTI	CTTAAG	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	3 cut(s)	596, 772, 847
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	4 cut(s)	80, 294, 443, 700
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	362
Bst6I	CTCTTC	5 cut(s)	56, 73, 166, 498, 620
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	235, 601
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	31, 331, 541
BstH2I	RGCGCY	2 cut(s)	214, 606
BstHHI	GCGC	2 cut(s)	213, 605
BstKTI	GATC	4 cut(s)	83, 297, 446, 703
BstMAI	GTCTC	2 cut(s)	252, 276
BstMBI	GATC	4 cut(s)	80, 294, 443, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	842
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	816
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	3 cut(s)	80, 443, 700
BstYI	RGATCY	3 cut(s)	80, 443, 700
BtsCI	GGATG	3 cut(s)	31, 331, 541
Cac8I	GCNNGC	2 cut(s)	235, 601
CfoI	GCGC	2 cut(s)	213, 605
Cfr10I	RCCGGY	1 cut(s)	791
CviAII	CATG	2 cut(s)	5, 386
CviJI	RGCY	8 cut(s)	14, 40, 137, 237, 305, 477, 791, 836
CviKI_1	RGCY	8 cut(s)	14, 40, 137, 237, 305, 477, 791, 836
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	4 cut(s)	82, 296, 445, 702
DpnII	GATC	4 cut(s)	80, 294, 443, 700
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	5 cut(s)	56, 73, 166, 498, 620
EarI	CTCTTC	5 cut(s)	56, 73, 166, 498, 620
Eco47III	AGCGCT	1 cut(s)	604
Eco88I	CYCGRG	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 389
FaiI	YATR	9 cut(s)	6, 374, 387, 393, 429, 513, 634, 695, 871
FalI	AAGNNNNNCTT	4 cut(s)	592, 624, 825, 857
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	2 cut(s)	4, 385
Fnu4HI	GCNGC	2 cut(s)	238, 805
FokI	GGATG	3 cut(s)	18, 318, 548
Fsp4HI	GCNGC	2 cut(s)	238, 805
GlaI	GCGC	2 cut(s)	212, 604
GluI	GCNGC	2 cut(s)	238, 805
HaeII	RGCGCY	2 cut(s)	214, 606
HapII	CCGG	1 cut(s)	792
HhaI	GCGC	2 cut(s)	213, 605
Hin1II	CATG	2 cut(s)	8, 389
Hin6I	GCGC	2 cut(s)	211, 603
HinP1I	GCGC	2 cut(s)	211, 603
HinfI	GANTC	4 cut(s)	245, 431, 516, 628
HpaII	CCGG	1 cut(s)	792
Hpy188I	TCNGA	7 cut(s)	24, 131, 228, 312, 443, 448, 746
Hpy188III	TCNNGA	7 cut(s)	78, 335, 494, 575, 586, 677, 704
HpyAV	CCTTC	4 cut(s)	233, 285, 581, 725
HpyCH4V	TGCA	2 cut(s)	4, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	842
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	8, 389
HspAI	GCGC	2 cut(s)	211, 603
Kzo9I	GATC	4 cut(s)	80, 294, 443, 700
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	1 cut(s)	816
LweI	GCATC	1 cut(s)	816
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	82, 296, 445, 702
MboI	GATC	4 cut(s)	80, 294, 443, 700
MflI	RGATCY	3 cut(s)	80, 443, 700
MluCI	AATT	9 cut(s)	190, 368, 436, 523, 581, 641, 662, 671, 860
MlyI	GAGTC	3 cut(s)	254, 425, 637
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	324, 342, 381, 564, 851
MslI	CAYNNNNRTG	1 cut(s)	336
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	842
NdeII	GATC	4 cut(s)	80, 294, 443, 700
NlaIII	CATG	2 cut(s)	8, 389
NlaIV	GGNNCC	1 cut(s)	702
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	516
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	239, 806
PleI	GAGTC	3 cut(s)	253, 425, 636
PpsI	GAGTC	3 cut(s)	253, 425, 636
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	702
PsuI	RGATCY	3 cut(s)	80, 443, 700
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	5 cut(s)	324, 342, 381, 564, 851
SatI	GCNGC	2 cut(s)	238, 805
Sau3AI	GATC	4 cut(s)	80, 294, 443, 700
SchI	GAGTC	3 cut(s)	254, 425, 637
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	6 cut(s)	66, 96, 139, 150, 573, 838
SfaNI	GCATC	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	323, 492, 677
SmoI	CTYRAG	3 cut(s)	323, 492, 677
Sse9I	AATT	9 cut(s)	190, 368, 436, 523, 581, 641, 662, 671, 860
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	820
StyD4I	CCNGG	1 cut(s)	360
TaqI	TCGA	4 cut(s)	71, 116, 434, 810
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	9 cut(s)	190, 368, 436, 523, 581, 641, 662, 671, 860
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	5 cut(s)	324, 342, 381, 564, 851
Tru9I	TTAA	5 cut(s)	324, 342, 381, 564, 851
TseI	GCWGC	1 cut(s)	804
TspDTI	ATGAA	2 cut(s)	513, 801
TspGWI	ACGGA	1 cut(s)	713
Van91I	CCANNNNNTGG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	323
XapI	RAATTY	5 cut(s)	368, 436, 581, 662, 671
XceI	RCATGY	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.