Rh5BG451700

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011368
Physical Location & Seq
Forward (+)
72533454 .. 72535600
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG451700.1

Sequence Viewer

Length: 849 bp
ATGCATGGTTTTCTGGCTCTACTGCCTCTAACACCACCACACCCACAGCCACACCTCTATTTCTTCAACCTCTCTTCTTCAAGATCTCTTCTTTACCTGCAAATCAGACCCAAATCTTCAACACCCATTCTGGGGTACCCCTCAAAAACCAACCTGAATCTCGTCGTGTTCTCCTCCCACTCTTCGAGTTTCTCGAATTTCAGCAGCAAACGACGACGCTTTGTTACGAAAGCGAGTCGCAGAGAGTCCCCGTACCAAGTTTTGGGGGTGTCTCCTTCTGCTACTGATGTCGAGATCAAGAAGGCGTATCGGAAACTTGCCCTCAAGTATCACCCAGATGTTAATAAAGAGCCAAATGCGCAGGAGAAATTTATGAGGATTAAACATGCCTATAGTACATTGCTGAATTCAAAATCTCGGGGTAATTATGACTCTAATTATGGATCTGACTATTCCTATTCTGGTTCTCAAAGGAGCCAAAGTAAGAAGGCTCAAGATGAAGAAGAGTTTTATGGATTCGAGGACTTCTTTAAAGATATTCAAGCAGAATTCCAGAACTGGGAAGAAAGTGCTTCTACACAAGGAAAGCCAAGGAGTCTGTGGGAGGAATTGTCGGAAATTGGAGAAGAATTTGTAGAATTTCTCGAGAAAGAACTCAACATAACGGATCCAGAGGTTGGATCAGATAACATCAATGAAGGGCCTGAGAAGGGTCCATTCACAAATTCTGGGAAAGAGACAACGGAAAGTGCAAGTAAAAAGGAAGCCAGTATGGGGGCTAGTATTGAAGAGAATATTGATGAGATAGAAGCTACTCTTGCTCAGTTGAAAAAGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

282

Amino Acids

31.94

Weight (kDa)

5.8

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 84 - 144 1.7e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 105
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AccB7I CCANNNNNTGG 2 cut(s) 262, 677
AclWI GGATC 4 cut(s) 451, 662, 675, 688
AcsI RAATTY 7 cut(s) 196, 368, 406, 548, 629, 638, 724
AfaI GTAC 3 cut(s) 137, 254, 397
AfiI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 559, 677, 710, 774
AgsI TTSAA 7 cut(s) 67, 81, 120, 411, 542, 788, 829
AjuI GAANNNNNNNTTGG 1 cut(s) 821
AluBI AGCT 1 cut(s) 812
AluI AGCT 1 cut(s) 812
Alw26I GTCTC 2 cut(s) 276, 731
AlwI GGATC 4 cut(s) 451, 662, 675, 688
Ama87I CYCGRG 2 cut(s) 417, 644
AoxI GGCC 1 cut(s) 701
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 7 cut(s) 196, 368, 406, 548, 629, 638, 724
Asp718I GGTACC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 701, 713
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 2 cut(s) 417, 644
AvaII GGWCC 1 cut(s) 713
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 276, 731
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 105
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 2 cut(s) 417, 644
BmgT120I GGNCC 2 cut(s) 701, 713
BmiI GGNNCC 4 cut(s) 137, 476, 669, 714
BmrI ACTGGG 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 568
BpuEI CTTGAG 2 cut(s) 308, 477
BsaJI CCNNGG 1 cut(s) 590
BsaXI ACNNNNNCTCC 4 cut(s) 466, 496, 596, 626
Bsc4I CCNNNNNNNGG 7 cut(s) 131, 132, 262, 559, 677, 710, 774
Bse1I ACTGG 2 cut(s) 563, 768
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 590
BseLI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 559, 677, 710, 774
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 696, 836
BseNI ACTGG 2 cut(s) 563, 768
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 135
BsiHKCI CYCGRG 2 cut(s) 417, 644
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 559, 677, 710, 774
BsmAI GTCTC 2 cut(s) 276, 731
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 703
BsoBI CYCGRG 2 cut(s) 417, 644
Bsp143I GATC 5 cut(s) 83, 294, 443, 667, 680
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 2 cut(s) 697, 835
BspLI GGNNCC 4 cut(s) 137, 476, 669, 714
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 4 cut(s) 451, 662, 675, 688
BspT107I GGYRCC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 2 cut(s) 563, 768
BssECI CCNNGG 1 cut(s) 590
BssMI GATC 5 cut(s) 83, 294, 443, 667, 680
BssT1I CCWWGG 1 cut(s) 590
Bst6I CTCTTC 5 cut(s) 79, 93, 187, 498, 783
BstDEI CTNAG 2 cut(s) 705, 822
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 5 cut(s) 86, 297, 446, 670, 683
BstMAI GTCTC 2 cut(s) 276, 731
BstMBI GATC 5 cut(s) 83, 294, 443, 667, 680
BstMWI GCNNNNNNNGC 2 cut(s) 358, 818
BstNSI RCATGY 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 216
BstX2I RGATCY 3 cut(s) 83, 443, 667
BstYI RGATCY 3 cut(s) 83, 443, 667
BsuRI GGCC 1 cut(s) 703
BveI ACCTGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 701, 713
CseI GACGC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 136, 253, 396
CviAII CATG 2 cut(s) 5, 386
CviQI GTAC 3 cut(s) 136, 253, 396
DdeI CTNAG 2 cut(s) 705, 822
DpnI GATC 5 cut(s) 85, 296, 445, 669, 682
DpnII GATC 5 cut(s) 83, 294, 443, 667, 680
DraI TTTAAA 1 cut(s) 532
Eam1104I CTCTTC 5 cut(s) 79, 93, 187, 498, 783
EarI CTCTTC 5 cut(s) 79, 93, 187, 498, 783
Eco130I CCWWGG 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 713
Eco88I CYCGRG 2 cut(s) 417, 644
EcoO109I RGGNCCY 1 cut(s) 701
EcoRI GAATTC 2 cut(s) 406, 548
EcoT14I CCWWGG 1 cut(s) 590
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 2 cut(s) 8, 389
FaiI YATR 9 cut(s) 6, 374, 387, 393, 429, 441, 513, 662, 773
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 4, 385
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 780
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 703
HgaI GACGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 361
Hin1II CATG 2 cut(s) 8, 389
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 6 cut(s) 157, 235, 245, 431, 516, 595
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 5 cut(s) 107, 312, 448, 616, 685
Hpy188III TCNNGA 9 cut(s) 81, 193, 292, 298, 494, 553, 644, 646, 671
Hpy99I CGWCG 3 cut(s) 167, 216, 219
HpyAV CCTTC 5 cut(s) 285, 295, 481, 692, 703
HpyCH4V TGCA 3 cut(s) 4, 100, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 818
HpyF3I CTNAG 2 cut(s) 705, 822
Hsp92II CATG 2 cut(s) 8, 389
HspAI GCGC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 83, 294, 443, 667, 680
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 85, 296, 445, 669, 682
MboI GATC 5 cut(s) 83, 294, 443, 667, 680
MflI RGATCY 3 cut(s) 83, 443, 667
MlyI GAGTC 4 cut(s) 244, 254, 425, 604
MmeI TCCRAC 2 cut(s) 594, 658
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 342, 381, 531
MslI CAYNNNNRTG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 358, 818
NdeII GATC 5 cut(s) 83, 294, 443, 667, 680
NlaIII CATG 2 cut(s) 8, 389
NlaIV GGNNCC 4 cut(s) 137, 476, 669, 714
NsbI TGCGCA 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 644
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 2 cut(s) 157, 516
PflMI CCANNNNNTGG 2 cut(s) 262, 677
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 4 cut(s) 243, 253, 425, 603
PpsI GAGTC 4 cut(s) 243, 253, 425, 603
PspN4I GGNNCC 4 cut(s) 137, 476, 669, 714
PspPI GGNCC 2 cut(s) 701, 713
PsuI RGATCY 3 cut(s) 83, 443, 667
RsaI GTAC 3 cut(s) 137, 254, 397
RsaNI GTAC 3 cut(s) 136, 253, 396
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 3 cut(s) 342, 381, 531
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 5 cut(s) 83, 294, 443, 667, 680
Sau96I GGNCC 2 cut(s) 701, 713
SchI GAGTC 4 cut(s) 244, 254, 425, 604
SetI ASST 6 cut(s) 57, 72, 99, 156, 678, 814
SfcI CTRYAG 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 644
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 3 cut(s) 323, 492, 644
SmoI CTYRAG 3 cut(s) 323, 492, 644
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 590
TaqI TCGA 5 cut(s) 185, 194, 291, 519, 645
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 2 cut(s) 157, 516
Tru1I TTAA 3 cut(s) 342, 381, 531
Tru9I TTAA 3 cut(s) 342, 381, 531
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 513, 711
TspGWI ACGGA 2 cut(s) 680, 758
Van91I CCANNNNNTGG 2 cut(s) 262, 677
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 7 cut(s) 196, 368, 406, 548, 629, 638, 724
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XhoI CTCGAG 1 cut(s) 644
XspI CTAG 1 cut(s) 780
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.