FvH4_3g36901

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011368
Physical Location & Seq
Forward (+)
31600326 .. 31602341
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36901.t1

Sequence Viewer

Length: 870 bp
ATGCATGGATTTCTGGCTCTTCTGCCACAACCCCACACCCTCTATTTCTTCAACCTCTCTTCTTCAAGATCCCTTCTCTACCTCCAAATCAGACCCAAATCCTCCGCACCCAATTTGGGTTACCCTTCAAAAACCAACCTGAATCTCGTCGTCTTGTCTTCCCACTCTTCGAGTTTCTCAAGTTTCAGTAGCAAACGACGACGCTTTGTTACGAGAGCGAGCCGCAGGGAGTCTCCTTACGAAGTTCTGGGAGTGTCTCCTTCTGCTACTGATGTGGAGATCAAGAAGGCCTATCGCAAACTTGCTCTTAAGTATCACCCAGATGTTAATAAAGAGGCAAATGCGCAGGAGAAATTTATGAGGATTAAACATGCGTATAGTACATTGCTGAGTTCAAAATCTCGGGGGAAATATGACTCTAGTTATGGATCTGACTATTCCTATTCTGGATCTCAAAGAAGCCAAAGGAAGAAGGCTCCAGAGGAAGAAGAGTTTTATGGATTCGGTAATTTTGTGAGGGATGTTCAAATTACAATAGAGGACTTCTTTAGAGATATTCAAGCAGAATTCCAGAACTGGGAAGAAAGTGCTTCTAAACAAGGAAAGCCAAGGAGTCTGTGGGAGGAACTGTCGGAAATTGGAGAAGAATTTGTGGAATTTCTCGAGAAAGAACTCAACATAACGGATCCGGAGGTTGAACCAAATAACATCAATGAAGGGCCTGAGAAGGGCAATCCGTCCAGAAATTCTGGGACAGAGAGAATGGGAAGTGCAAGTAAAAAGGAATCCACCCCGGGGGCTAGTATTGAAGAGAATATTGATGAGATAGAAGCTACTCTTGCTCAGTTGAAAAAGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

290

Amino Acids

32.79

Weight (kDa)

6.57

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 79 - 139 1.2e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 2 cut(s) 105, 223
AclWI GGATC 5 cut(s) 63, 436, 457, 680, 693
AcsI RAATTY 5 cut(s) 353, 566, 647, 656, 745
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 4 cut(s) 116, 577, 728, 795
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 9 cut(s) 52, 66, 129, 396, 527, 560, 698, 809, 850
AjuI GAANNNNNNNTTGG 1 cut(s) 842
AluBI AGCT 1 cut(s) 833
AluI AGCT 1 cut(s) 833
Alw26I GTCTC 2 cut(s) 237, 261
AlwI GGATC 5 cut(s) 63, 436, 457, 680, 693
Ama87I CYCGRG 3 cut(s) 402, 662, 793
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 2 cut(s) 288, 719
ApoI RAATTY 5 cut(s) 353, 566, 647, 656, 745
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 2 cut(s) 794, 795
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 3 cut(s) 402, 662, 793
BamHI GGATCC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 150
BcnI CCSGG 2 cut(s) 794, 795
BcoDI GTCTC 2 cut(s) 237, 261
BfaI CTAG 2 cut(s) 420, 801
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 794, 795
BmeT110I CYCGRG 3 cut(s) 402, 662, 793
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 477, 687
BmrFI CCNGG 2 cut(s) 794, 795
BmrI ACTGGG 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 794, 795
BsaJI CCNNGG 4 cut(s) 608, 792, 793, 794
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 577, 728, 795
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 688
BseDI CCNNGG 4 cut(s) 608, 792, 793, 794
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 4 cut(s) 116, 577, 728, 795
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 3 cut(s) 380, 714, 857
BseNI ACTGG 1 cut(s) 581
BshFI GGCC 2 cut(s) 290, 721
BsiHKCI CYCGRG 3 cut(s) 402, 662, 793
BsiSI CCGG 2 cut(s) 689, 794
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 4 cut(s) 116, 577, 728, 795
BsmAI GTCTC 2 cut(s) 237, 261
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 2 cut(s) 290, 721
BsoBI CYCGRG 3 cut(s) 402, 662, 793
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 5 cut(s) 68, 279, 428, 449, 685
BspACI CCGC 2 cut(s) 105, 223
BspANI GGCC 2 cut(s) 290, 721
BspCNI CTCAG 3 cut(s) 381, 715, 856
BspEI TCCGGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 477, 687
BspPI GGATC 5 cut(s) 63, 436, 457, 680, 693
BspQI GCTCTTC 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 4 cut(s) 608, 792, 793, 794
BssMI GATC 5 cut(s) 68, 279, 428, 449, 685
BssT1I CCWWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 630
Bst6I CTCTTC 5 cut(s) 24, 64, 172, 483, 804
BstAFI CTTAAG 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 389, 723, 843
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 5 cut(s) 71, 282, 431, 452, 688
BstMAI GTCTC 2 cut(s) 237, 261
BstMBI GATC 5 cut(s) 68, 279, 428, 449, 685
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNSI RCATGY 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 792, 793
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 4 cut(s) 68, 428, 449, 685
BstYI RGATCY 4 cut(s) 68, 428, 449, 685
BsuRI GGCC 2 cut(s) 290, 721
BtsCI GGATG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 719
Cfr9I CCCGGG 1 cut(s) 793
CseI GACGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 381
CviAII CATG 2 cut(s) 5, 371
CviJI RGCY 9 cut(s) 17, 222, 290, 462, 476, 607, 721, 800, 833
CviKI_1 RGCY 9 cut(s) 17, 222, 290, 462, 476, 607, 721, 800, 833
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 3 cut(s) 389, 723, 843
DpnI GATC 5 cut(s) 70, 281, 430, 451, 687
DpnII GATC 5 cut(s) 68, 279, 428, 449, 685
Eam1104I CTCTTC 5 cut(s) 24, 64, 172, 483, 804
EarI CTCTTC 5 cut(s) 24, 64, 172, 483, 804
Eco130I CCWWGG 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 290
Eco88I CYCGRG 3 cut(s) 402, 662, 793
Eco91I GGTNACC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 566
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 2 cut(s) 8, 374
FaiI YATR 8 cut(s) 6, 359, 372, 378, 414, 426, 498, 680
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 1 cut(s) 766
FatI CATG 2 cut(s) 4, 370
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 2 cut(s) 420, 801
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 2 cut(s) 290, 721
HapII CCGG 2 cut(s) 689, 794
HgaI GACGC 1 cut(s) 210
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 8, 374
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 6 cut(s) 142, 230, 416, 501, 613, 785
HpaII CCGG 2 cut(s) 689, 794
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 92, 433, 634
Hpy188III TCNNGA 9 cut(s) 66, 283, 447, 479, 571, 662, 664, 689, 741
Hpy99I CGWCG 3 cut(s) 152, 201, 204
HpyAV CCTTC 7 cut(s) 83, 135, 270, 280, 466, 710, 721
HpyCH4III ACNGT 1 cut(s) 630
HpyCH4V TGCA 2 cut(s) 4, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 3 cut(s) 389, 723, 843
Hsp92II CATG 2 cut(s) 8, 374
HspAI GCGC 1 cut(s) 344
Kpn2I TCCGGA 1 cut(s) 688
Kzo9I GATC 5 cut(s) 68, 279, 428, 449, 685
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 481
MaeI CTAG 2 cut(s) 420, 801
MaeIII GTNAC 2 cut(s) 119, 208
MalI GATC 5 cut(s) 70, 281, 430, 451, 687
MboI GATC 5 cut(s) 68, 279, 428, 449, 685
MflI RGATCY 4 cut(s) 68, 428, 449, 685
MlyI GAGTC 3 cut(s) 239, 410, 622
MmeI TCCRAC 1 cut(s) 612
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 688
MseI TTAA 3 cut(s) 309, 327, 366
MslI CAYNNNNRTG 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 2 cut(s) 689, 794
MspR9I CCNGG 2 cut(s) 794, 795
MwoI GCNNNNNNNGC 1 cut(s) 839
NciI CCSGG 2 cut(s) 794, 795
NdeII GATC 5 cut(s) 68, 279, 428, 449, 685
NlaIII CATG 2 cut(s) 8, 374
NlaIV GGNNCC 2 cut(s) 477, 687
NsbI TGCGCA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 662
PceI AGGCCT 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 142, 501, 785
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 3 cut(s) 238, 410, 621
PpsI GAGTC 3 cut(s) 238, 410, 621
PspEI GGTNACC 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 477, 687
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 4 cut(s) 68, 428, 449, 685
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 309, 327, 366
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 5 cut(s) 68, 279, 428, 449, 685
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 3 cut(s) 239, 410, 622
ScrFI CCNGG 2 cut(s) 794, 795
SetI ASST 5 cut(s) 57, 84, 141, 696, 835
Sfr274I CTCGAG 1 cut(s) 662
SlaI CTCGAG 1 cut(s) 662
SmaI CCCGGG 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 3 cut(s) 178, 308, 662
SmoI CTYRAG 3 cut(s) 178, 308, 662
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 2 cut(s) 105, 223
SspI AATATT 1 cut(s) 817
SspMI CTAG 2 cut(s) 420, 801
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 792, 793
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 630
TaqI TCGA 2 cut(s) 170, 663
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 3 cut(s) 142, 501, 785
Tru1I TTAA 3 cut(s) 309, 327, 366
Tru9I TTAA 3 cut(s) 309, 327, 366
TspDTI ATGAA 1 cut(s) 729
TspGWI ACGGA 2 cut(s) 698, 726
TspMI CCCGGG 1 cut(s) 793
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 5 cut(s) 353, 566, 647, 656, 745
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XhoI CTCGAG 1 cut(s) 662
XmaI CCCGGG 1 cut(s) 793
XspI CTAG 2 cut(s) 420, 801
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.