Rmu_sc0006887.1_g000014

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006887.1
OG0011368
Physical Location & Seq
Reverse (-)
55138 .. 57284
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006887.1_g000014.1.cds

Sequence Viewer

Length: 882 bp
atgcatggttttctggctctactgcctctaacaccaccacacccacagccacacctctatttcttcaacctctcttcttcaagatctcttctttacctgcaaatcagacccaaatcttcaacacccattctggggtacccctcaaaaaccaacctgaatctcgtcgtgttctcctcccactcttcgagtttctcgaatttcagcagcaaacgacgacgctttgttacgaaagcgagtcgcagagagtccccgtaccaagttttgggggtgtctccttctgctactgatgtcgagatcaagaaggcgtatcggaaacttgccctcaagtatcacccagatgttaataaagagccaaatgcgcaggagaaatttatgaggattaaacatgcctatagtacattgctgaattcaaaatctcgggggaattatgactctaattacggatctgactattcctattctggttctcaaaggagccaaagtaagaaggctcaagatgaagaagagttttatggattcggtaattttgtgagggatgttcaaataacaatagaggacttctttaaagatattcaagcagaattccagaactgggaagaaagtgcttctacacaaggaaagccaaggagtctgtgggaggaattgtcggaaattggagaagaatttgtagaatttctcgagaaagaactcaacataacggatccagaggttggatcagataacatcaatgaagggcctgagaagggtccattcacaaattctgggaaagagacaacggaaagtgcaagtaaaaaggaagccagtatgggggctagtattgaagagaatattgatgagatagaagctactcttgctcagttgaaaaaggaattgggattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

293

Amino Acids

33.18

Weight (kDa)

5.8

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 105
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AccB7I CCANNNNNTGG 2 cut(s) 262, 710
AclWI GGATC 4 cut(s) 451, 695, 708, 721
AcsI RAATTY 7 cut(s) 196, 368, 406, 581, 662, 671, 757
AfaI GTAC 3 cut(s) 137, 254, 397
AfiI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 592, 710, 743, 807
AgsI TTSAA 8 cut(s) 67, 81, 120, 411, 542, 575, 821, 862
AjuI GAANNNNNNNTTGG 1 cut(s) 854
AluBI AGCT 1 cut(s) 845
AluI AGCT 1 cut(s) 845
Alw26I GTCTC 2 cut(s) 276, 764
AlwI GGATC 4 cut(s) 451, 695, 708, 721
Ama87I CYCGRG 2 cut(s) 417, 677
AoxI GGCC 1 cut(s) 734
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 7 cut(s) 196, 368, 406, 581, 662, 671, 757
Asp718I GGTACC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 734, 746
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 2 cut(s) 417, 677
AvaII GGWCC 1 cut(s) 746
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 276, 764
BfaI CTAG 1 cut(s) 813
BfmI CTRYAG 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 105
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 2 cut(s) 417, 677
BmgT120I GGNCC 2 cut(s) 734, 746
BmiI GGNNCC 4 cut(s) 137, 476, 702, 747
BmrI ACTGGG 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 601
BpuEI CTTGAG 2 cut(s) 308, 477
BsaJI CCNNGG 1 cut(s) 623
BsaXI ACNNNNNCTCC 4 cut(s) 466, 496, 629, 659
Bsc4I CCNNNNNNNGG 7 cut(s) 131, 132, 262, 592, 710, 743, 807
Bse1I ACTGG 2 cut(s) 596, 801
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 592, 710, 743, 807
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 729, 869
BseNI ACTGG 2 cut(s) 596, 801
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 736
BshNI GGYRCC 1 cut(s) 135
BsiHKCI CYCGRG 2 cut(s) 417, 677
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 7 cut(s) 131, 132, 262, 592, 710, 743, 807
BsmAI GTCTC 2 cut(s) 276, 764
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 736
BsoBI CYCGRG 2 cut(s) 417, 677
Bsp143I GATC 5 cut(s) 83, 294, 443, 700, 713
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 2 cut(s) 730, 868
BspLI GGNNCC 4 cut(s) 137, 476, 702, 747
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 4 cut(s) 451, 695, 708, 721
BspT107I GGYRCC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 2 cut(s) 596, 801
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 5 cut(s) 83, 294, 443, 700, 713
BssT1I CCWWGG 1 cut(s) 623
Bst6I CTCTTC 5 cut(s) 79, 93, 187, 498, 816
BstDEI CTNAG 2 cut(s) 738, 855
BstF5I GGATG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 5 cut(s) 86, 297, 446, 703, 716
BstMAI GTCTC 2 cut(s) 276, 764
BstMBI GATC 5 cut(s) 83, 294, 443, 700, 713
BstMWI GCNNNNNNNGC 2 cut(s) 358, 851
BstNSI RCATGY 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 216
BstX2I RGATCY 3 cut(s) 83, 443, 700
BstYI RGATCY 3 cut(s) 83, 443, 700
BsuRI GGCC 1 cut(s) 736
BtsCI GGATG 1 cut(s) 541
BveI ACCTGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 734, 746
CseI GACGC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 136, 253, 396
CviAII CATG 2 cut(s) 5, 386
CviQI GTAC 3 cut(s) 136, 253, 396
DdeI CTNAG 2 cut(s) 738, 855
DpnI GATC 5 cut(s) 85, 296, 445, 702, 715
DpnII GATC 5 cut(s) 83, 294, 443, 700, 713
DraI TTTAAA 1 cut(s) 565
Eam1104I CTCTTC 5 cut(s) 79, 93, 187, 498, 816
EarI CTCTTC 5 cut(s) 79, 93, 187, 498, 816
Eco130I CCWWGG 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 746
Eco88I CYCGRG 2 cut(s) 417, 677
EcoO109I RGGNCCY 1 cut(s) 734
EcoRI GAATTC 2 cut(s) 406, 581
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 2 cut(s) 8, 389
FaiI YATR 8 cut(s) 6, 374, 387, 393, 429, 513, 695, 806
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 4, 385
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 813
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 736
HgaI GACGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 361
Hin1II CATG 2 cut(s) 8, 389
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 6 cut(s) 157, 235, 245, 431, 516, 628
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 5 cut(s) 107, 312, 448, 649, 718
Hpy188III TCNNGA 9 cut(s) 81, 193, 292, 298, 494, 586, 677, 679, 704
Hpy99I CGWCG 3 cut(s) 167, 216, 219
HpyAV CCTTC 5 cut(s) 285, 295, 481, 725, 736
HpyCH4V TGCA 3 cut(s) 4, 100, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 851
HpyF3I CTNAG 2 cut(s) 738, 855
Hsp92II CATG 2 cut(s) 8, 389
HspAI GCGC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 83, 294, 443, 700, 713
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 813
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 85, 296, 445, 702, 715
MboI GATC 5 cut(s) 83, 294, 443, 700, 713
MflI RGATCY 3 cut(s) 83, 443, 700
MlyI GAGTC 4 cut(s) 244, 254, 425, 637
MmeI TCCRAC 2 cut(s) 627, 691
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 342, 381, 564
MslI CAYNNNNRTG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 358, 851
NdeII GATC 5 cut(s) 83, 294, 443, 700, 713
NlaIII CATG 2 cut(s) 8, 389
NlaIV GGNNCC 4 cut(s) 137, 476, 702, 747
NsbI TGCGCA 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 2 cut(s) 157, 516
PflMI CCANNNNNTGG 2 cut(s) 262, 710
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 4 cut(s) 243, 253, 425, 636
PpsI GAGTC 4 cut(s) 243, 253, 425, 636
PspN4I GGNNCC 4 cut(s) 137, 476, 702, 747
PspPI GGNCC 2 cut(s) 734, 746
PsuI RGATCY 3 cut(s) 83, 443, 700
RsaI GTAC 3 cut(s) 137, 254, 397
RsaNI GTAC 3 cut(s) 136, 253, 396
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 3 cut(s) 342, 381, 564
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 5 cut(s) 83, 294, 443, 700, 713
Sau96I GGNCC 2 cut(s) 734, 746
SchI GAGTC 4 cut(s) 244, 254, 425, 637
SetI ASST 6 cut(s) 57, 72, 99, 156, 711, 847
SfcI CTRYAG 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 3 cut(s) 323, 492, 677
SmoI CTYRAG 3 cut(s) 323, 492, 677
SspI AATATT 1 cut(s) 829
SspMI CTAG 1 cut(s) 813
StyI CCWWGG 1 cut(s) 623
TaqI TCGA 4 cut(s) 185, 194, 291, 678
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 2 cut(s) 157, 516
Tru1I TTAA 3 cut(s) 342, 381, 564
Tru9I TTAA 3 cut(s) 342, 381, 564
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 513, 744
TspGWI ACGGA 3 cut(s) 456, 713, 791
Van91I CCANNNNNTGG 2 cut(s) 262, 710
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 7 cut(s) 196, 368, 406, 581, 662, 671, 757
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 677
XspI CTAG 1 cut(s) 813
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.