RLG00000035848

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011368
Physical Location & Seq
Forward (+)
72585013 .. 72587120
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035848

Sequence Viewer

Length: 897 bp
ATGCATGGTTTTCTGGCTCTGGCTCTACTGCCTCTAACACCACCACACCCACAACCACACCTCTATTTCTTCAACCTCTCTTCTTCTTCTTCTCCAAGATCTCTTCTTTACCTGCAAATCAGACCCAAATCTTCAACACCCATTTTGGGATACCCCTCAAAAACCAACCTGAATCTCCTCGTGTTCTCCTCCCACTCTTCGAGTTTCTCGAATTTCAATAGCAAACGACGACGTTTTGTTACGAGAGCTAGCCGCAGGGAGTCGCCGTACCAAGTTTTGGGGGTGTCTCCTTCTGCTACTGATGTCGAGATCAAAAAGGCGTATCGGAAACTTGCCCTCAAGTATCACCCAGATGTTAATAAAGAGCCAAATGCGCAGGAGAAATTTATGAGGATTAAACATGCCTATACTACATTGCTGAATTCAAAATCTCGGGGGAATTATGACTCTAATTACGGATCTGACTATTCCTATTCTGGTTCTCAAAGAAGCCAAAGTAAGAAGGCTCAAGATGAAGAAGAGTTTTATGGATTCGGTAATTTTGTGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAAGATATTCAAGCAGAATTCCAGAACTGGGAAGACAGTGCTTCTACACAAGGAAAGCCAAGGAGTCTGTGGGAGGAATTGTCGGAAATTGGAGAAGAATTTGTAGAATTTCTCGAGAAAGAACTCAACATAACGGATCCGGAGGTTGGATCAGATAACGTCAATGAAGGGCCTGAGAAGGGTCCATTCAGAAATTCTGGGAAAGAGACAACGGAAAGTGCAAGTAAAAAGGAAGCCAGTATGGGGGCTAGTATTGAAGAGAATATTGATGAGATAGAAGCTACTCTTGCTCAGTTGAAAAAGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

299

Amino Acids

33.75

Weight (kDa)

5.96

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 89 - 149 2.8e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 1 cut(s) 253
AclWI GGATC 4 cut(s) 466, 710, 723, 736
AcsI RAATTY 7 cut(s) 211, 383, 421, 596, 677, 686, 772
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 6 cut(s) 146, 277, 607, 725, 758, 822
AgsI TTSAA 8 cut(s) 73, 135, 217, 426, 557, 590, 836, 877
AjuI GAANNNNNNNTTGG 1 cut(s) 869
AluBI AGCT 2 cut(s) 248, 860
AluI AGCT 2 cut(s) 248, 860
Alw26I GTCTC 2 cut(s) 291, 779
AlwI GGATC 4 cut(s) 466, 710, 723, 736
Ama87I CYCGRG 2 cut(s) 432, 692
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 1 cut(s) 749
ApoI RAATTY 7 cut(s) 211, 383, 421, 596, 677, 686, 772
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 749, 761
AsuHPI GGTGA 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 2 cut(s) 432, 692
AvaII GGWCC 1 cut(s) 761
BamHI GGATCC 1 cut(s) 715
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 618
BceAI ACGGC 1 cut(s) 250
BciVI GTATCC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 291, 779
BfaI CTAG 2 cut(s) 249, 828
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 143
BglII AGATCT 1 cut(s) 98
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 761
BmeT110I CYCGRG 2 cut(s) 432, 692
BmgT120I GGNCC 2 cut(s) 749, 761
BmiI GGNNCC 2 cut(s) 717, 762
BmrI ACTGGG 1 cut(s) 616
BmtI GCTAGC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 323, 492
BsaJI CCNNGG 1 cut(s) 638
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 644, 674
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 277, 607, 725, 758, 822
Bse1I ACTGG 2 cut(s) 611, 816
Bse3DI GCAATG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 6 cut(s) 146, 277, 607, 725, 758, 822
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 2 cut(s) 744, 884
BseNI ACTGG 2 cut(s) 611, 816
BseRI GAGGAG 2 cut(s) 167, 178
BshFI GGCC 1 cut(s) 751
BsiHKCI CYCGRG 2 cut(s) 432, 692
BsiSI CCGG 1 cut(s) 719
BslI CCNNNNNNNGG 6 cut(s) 146, 277, 607, 725, 758, 822
BsmAI GTCTC 2 cut(s) 291, 779
BsnI GGCC 1 cut(s) 751
BsoBI CYCGRG 2 cut(s) 432, 692
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 5 cut(s) 98, 309, 458, 715, 728
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 751
BspCNI CTCAG 2 cut(s) 745, 883
BspEI TCCGGA 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 717, 762
BspMI ACCTGC 1 cut(s) 120
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 4 cut(s) 466, 710, 723, 736
BsrDI GCAATG 1 cut(s) 413
BsrI ACTGG 2 cut(s) 611, 816
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 5 cut(s) 98, 309, 458, 715, 728
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 638
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 5 cut(s) 85, 108, 202, 513, 831
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 753, 870
BstF5I GGATG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 5 cut(s) 101, 312, 461, 718, 731
BstMAI GTCTC 2 cut(s) 291, 779
BstMBI GATC 5 cut(s) 98, 309, 458, 715, 728
BstMWI GCNNNNNNNGC 2 cut(s) 373, 866
BstNSI RCATGY 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 3 cut(s) 98, 458, 715
BstYI RGATCY 3 cut(s) 98, 458, 715
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 751
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 749, 761
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 5, 401
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 2 cut(s) 753, 870
DpnI GATC 5 cut(s) 100, 311, 460, 717, 730
DpnII GATC 5 cut(s) 98, 309, 458, 715, 728
DraI TTTAAA 1 cut(s) 580
Eam1104I CTCTTC 5 cut(s) 85, 108, 202, 513, 831
EarI CTCTTC 5 cut(s) 85, 108, 202, 513, 831
Eco130I CCWWGG 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 761
Eco88I CYCGRG 2 cut(s) 432, 692
EcoO109I RGGNCCY 1 cut(s) 749
EcoRI GAATTC 2 cut(s) 421, 596
EcoT14I CCWWGG 1 cut(s) 638
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 2 cut(s) 8, 404
FaiI YATR 8 cut(s) 6, 389, 402, 408, 444, 528, 710, 821
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FatI CATG 2 cut(s) 4, 400
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 2 cut(s) 249, 828
FspI TGCGCA 1 cut(s) 375
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 751
HapII CCGG 1 cut(s) 719
HhaI GCGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 8, 404
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 5 cut(s) 172, 260, 446, 531, 643
HpaII CCGG 1 cut(s) 719
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 6 cut(s) 122, 327, 463, 664, 733, 770
Hpy188III TCNNGA 7 cut(s) 208, 307, 509, 601, 692, 694, 719
Hpy99I CGWCG 2 cut(s) 231, 234
HpyAV CCTTC 4 cut(s) 300, 496, 740, 751
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 2 cut(s) 232, 738
HpyCH4V TGCA 3 cut(s) 4, 115, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 866
HpyF3I CTNAG 2 cut(s) 753, 870
HpySE526I ACGT 2 cut(s) 232, 738
Hsp92II CATG 2 cut(s) 8, 404
HspAI GCGC 1 cut(s) 374
Kpn2I TCCGGA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 98, 309, 458, 715, 728
MaeI CTAG 2 cut(s) 249, 828
MaeII ACGT 2 cut(s) 232, 738
MaeIII GTNAC 1 cut(s) 238
MalI GATC 5 cut(s) 100, 311, 460, 717, 730
MboI GATC 5 cut(s) 98, 309, 458, 715, 728
MflI RGATCY 3 cut(s) 98, 458, 715
MlyI GAGTC 3 cut(s) 269, 440, 652
MmeI TCCRAC 2 cut(s) 642, 706
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 718
MseI TTAA 3 cut(s) 357, 396, 579
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 1 cut(s) 719
MwoI GCNNNNNNNGC 2 cut(s) 373, 866
NdeII GATC 5 cut(s) 98, 309, 458, 715, 728
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 2 cut(s) 8, 404
NlaIV GGNNCC 2 cut(s) 717, 762
NsbI TGCGCA 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 404
PaeR7I CTCGAG 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 2 cut(s) 172, 531
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 3 cut(s) 268, 440, 651
PpsI GAGTC 3 cut(s) 268, 440, 651
PspN4I GGNNCC 2 cut(s) 717, 762
PspPI GGNCC 2 cut(s) 749, 761
PsuI RGATCY 3 cut(s) 98, 458, 715
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 3 cut(s) 357, 396, 579
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 98, 309, 458, 715, 728
Sau96I GGNCC 2 cut(s) 749, 761
SchI GAGTC 3 cut(s) 269, 440, 652
SetI ASST 9 cut(s) 63, 78, 114, 171, 235, 250, 726, 741, 862
Sfr274I CTCGAG 1 cut(s) 692
SinI GGWCC 1 cut(s) 761
SlaI CTCGAG 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 3 cut(s) 338, 507, 692
SmoI CTYRAG 3 cut(s) 338, 507, 692
SsiI CCGC 1 cut(s) 253
SspI AATATT 1 cut(s) 844
SspMI CTAG 2 cut(s) 249, 828
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 2 cut(s) 235, 741
TaqI TCGA 4 cut(s) 200, 209, 306, 693
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 172, 531
Tru1I TTAA 3 cut(s) 357, 396, 579
Tru9I TTAA 3 cut(s) 357, 396, 579
TscAI CASTG 1 cut(s) 622
TspDTI ATGAA 2 cut(s) 528, 759
TspGWI ACGGA 3 cut(s) 471, 728, 806
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 761
XapI RAATTY 7 cut(s) 211, 383, 421, 596, 677, 686, 772
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 692
XspI CTAG 2 cut(s) 249, 828
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.