MD11G1095700.v1.1

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011368
Physical Location & Seq
Reverse (-)
7963334 .. 7966374
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1095700.v1.1.491

Sequence Viewer

Length: 810 bp
ATGCATGGATTTGCTTTTCTGCCTCTAACTCCTCCATGCACCCTCTGTTTCTTCAACCTCCCTCCTTCCGCTTTTTCTTCTTCTTCAAGATCTCTGCTTTTCTTGCAAACCCGACCCAAATCTTCGAAACCCATTTTCAGACACGCATCGAAACCCGTAACCAGTTTCTTGAATTTGAAACCGGAGCGGCGACGTTTTGCCACCGTCTTGAGAGCGAGTCGCAGAGAGTCTCCTTACCAGGTTCTGGGCGTGTCTCCTTCCGCAACGGATGTCGAGATCAAAAGGGCTTACCGGAAACTTGCTCTTAAGTATCACCCCGATGTTAATAAAGAGGCAAATGCGCAGGAGAAATTTATGCGGATTAAGCATGCCTACAATACATTGCTGAGTTCTAAATCTCGGGGAAAATACGACTCTAATTTTGGATCTGACTATTCCTATTCCTCTTCTCAAAGAAACCAGAGCAAGAAGTCTCAAGATGAAGAAGAGTTTTACGGATTTGAGGACTTCTTTAAAGATATCCAAGAAGAATTCAAGAACTGGGAAGCAAGTGCTTCGTCACAGGGAAAGCCAAAGAGTCTATGGGAGGAATTGGGGGAGATTGGAGAAGAATTTGTGGAATTTCTCGAGAAAGAACTAAACATAACGGATCCAGAAGATGGAGCAAATAACAATGATGAAGGCAGCTCTGGGAAACAGAGAACAGAAAATGTTGGTCAAGACAAAGCTGTTAAGGAGAGCAGCATCGAGGATAATATCGATGAGATAGAAGCTACTCTTGCTCAGTTAAAAAAGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

270

Amino Acids

30.61

Weight (kDa)

6.18

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 78 - 138 3.6e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 342
AccB7I CCANNNNNTGG 2 cut(s) 244, 659
AccBSI CCGCTC 1 cut(s) 187
AciI CCGC 4 cut(s) 69, 187, 261, 358
AclWI GGATC 3 cut(s) 433, 644, 657
AcsI RAATTY 5 cut(s) 172, 350, 530, 611, 620
AfiI CCNNNNNNNGG 2 cut(s) 244, 659
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 5 cut(s) 55, 87, 172, 178, 535
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 687, 728, 773
AluI AGCT 3 cut(s) 687, 728, 773
Alw26I GTCTC 3 cut(s) 234, 258, 477
AlwI GGATC 3 cut(s) 433, 644, 657
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 2 cut(s) 399, 626
ApeKI GCWGC 2 cut(s) 684, 741
ApoI RAATTY 5 cut(s) 172, 350, 530, 611, 620
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 125
AvaI CYCGRG 2 cut(s) 399, 626
BamHI GGATCC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 696, 753
BccI CCATC 1 cut(s) 653
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 234, 258, 477
BfrI CTTAAG 1 cut(s) 305
BglII AGATCT 1 cut(s) 89
BisI GCNGC 3 cut(s) 188, 685, 742
BlsI GCNGC 3 cut(s) 189, 686, 743
Bme1390I CCNGG 1 cut(s) 239
BmeT110I CYCGRG 2 cut(s) 399, 626
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 155, 753
BmuI ACTGGG 1 cut(s) 550
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 229, 459
Bsa29I ATCGAT 1 cut(s) 759
BsaWI WCCGGW 2 cut(s) 181, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 659
Bse1I ACTGG 2 cut(s) 162, 545
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 759
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 244, 659
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 377, 797
BseNI ACTGG 2 cut(s) 162, 545
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 696, 753
BshVI ATCGAT 1 cut(s) 759
BsiHKCI CYCGRG 2 cut(s) 399, 626
BsiSI CCGG 2 cut(s) 182, 292
BslI CCNNNNNNNGG 2 cut(s) 244, 659
BsmAI GTCTC 3 cut(s) 234, 258, 477
BsoBI CYCGRG 2 cut(s) 399, 626
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 4 cut(s) 89, 276, 425, 649
BspACI CCGC 4 cut(s) 69, 187, 261, 358
BspCNI CTCAG 2 cut(s) 378, 796
BspDI ATCGAT 1 cut(s) 759
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 3 cut(s) 433, 644, 657
BspT104I TTCGAA 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 2 cut(s) 162, 545
BssMI GATC 4 cut(s) 89, 276, 425, 649
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 451, 480
BstAFI CTTAAG 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 386, 783
BstF5I GGATG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 4 cut(s) 92, 279, 428, 652
BstMAI GTCTC 3 cut(s) 234, 258, 477
BstMBI GATC 4 cut(s) 89, 276, 425, 649
BstMWI GCNNNNNNNGC 3 cut(s) 103, 364, 779
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 696, 753
BstX2I RGATCY 3 cut(s) 89, 425, 649
BstYI RGATCY 3 cut(s) 89, 425, 649
Bsu15I ATCGAT 1 cut(s) 759
BsuTUI ATCGAT 1 cut(s) 759
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 759
CsiI ACCWGGT 1 cut(s) 237
CviAII CATG 3 cut(s) 5, 36, 368
CviJI RGCY 5 cut(s) 287, 571, 687, 728, 773
CviKI_1 RGCY 5 cut(s) 287, 571, 687, 728, 773
DdeI CTNAG 2 cut(s) 386, 783
DpnI GATC 4 cut(s) 91, 278, 427, 651
DpnII GATC 4 cut(s) 89, 276, 425, 649
DraI TTTAAA 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 451, 480
EarI CTCTTC 2 cut(s) 451, 480
Eco32I GATATC 1 cut(s) 520
Eco88I CYCGRG 2 cut(s) 399, 626
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 39, 371
FaiI YATR 6 cut(s) 6, 37, 356, 369, 583, 644
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FatI CATG 3 cut(s) 4, 35, 367
Fnu4HI GCNGC 3 cut(s) 188, 685, 742
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 3 cut(s) 188, 685, 742
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 1 cut(s) 342
GluI GCNGC 3 cut(s) 188, 685, 742
HapII CCGG 2 cut(s) 182, 292
HhaI GCGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 8, 39, 371
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 4 cut(s) 217, 227, 413, 577
HpaII CCGG 2 cut(s) 182, 292
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 140, 430
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 75, 267, 674
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 4, 39, 106
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 364, 779
HpyF3I CTNAG 2 cut(s) 386, 783
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 3 cut(s) 8, 39, 371
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 4 cut(s) 89, 276, 425, 649
LmnI GCTCC 2 cut(s) 184, 662
Lsp1109I GCAGC 2 cut(s) 696, 753
LweI GCATC 2 cut(s) 155, 753
MabI ACCWGGT 1 cut(s) 237
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 157, 558
MalI GATC 4 cut(s) 91, 278, 427, 651
MbiI CCGCTC 1 cut(s) 187
MboI GATC 4 cut(s) 89, 276, 425, 649
MflI RGATCY 3 cut(s) 89, 425, 649
MluCI AATT 8 cut(s) 172, 350, 418, 530, 590, 611, 620, 797
MlyI GAGTC 4 cut(s) 226, 236, 407, 586
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 306, 324, 363, 513, 732, 788
MslI CAYNNNNRTG 1 cut(s) 318
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 2 cut(s) 182, 292
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 103, 364, 779
NdeII GATC 4 cut(s) 89, 276, 425, 649
NlaIII CATG 3 cut(s) 8, 39, 371
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 1 cut(s) 558
NsbI TGCGCA 1 cut(s) 342
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 371
NspV TTCGAA 1 cut(s) 125
PaeI GCATGC 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 626
PflMI CCANNNNNTGG 2 cut(s) 244, 659
PkrI GCNGC 3 cut(s) 189, 686, 743
PleI GAGTC 4 cut(s) 225, 235, 407, 585
PpsI GAGTC 4 cut(s) 225, 235, 407, 585
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 651
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 3 cut(s) 89, 425, 649
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 6 cut(s) 306, 324, 363, 513, 732, 788
SatI GCNGC 3 cut(s) 188, 685, 742
Sau3AI GATC 4 cut(s) 89, 276, 425, 649
SchI GAGTC 4 cut(s) 226, 236, 407, 586
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 60, 196, 243, 689, 730, 775
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 2 cut(s) 155, 753
Sfr274I CTCGAG 1 cut(s) 626
SfuI TTCGAA 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 4 cut(s) 208, 305, 474, 626
SmoI CTYRAG 4 cut(s) 208, 305, 474, 626
SphI GCATGC 1 cut(s) 371
Sse9I AATT 8 cut(s) 172, 350, 418, 530, 590, 611, 620, 797
SsiI CCGC 4 cut(s) 69, 187, 261, 358
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 196
TaqI TCGA 6 cut(s) 125, 149, 273, 627, 747, 759
TasI AATT 8 cut(s) 172, 350, 418, 530, 590, 611, 620, 797
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 6 cut(s) 306, 324, 363, 513, 732, 788
Tru9I TTAA 6 cut(s) 306, 324, 363, 513, 732, 788
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 2 cut(s) 684, 741
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 2 cut(s) 495, 693
TspGWI ACGGA 3 cut(s) 281, 510, 662
Van91I CCANNNNNTGG 2 cut(s) 244, 659
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 5 cut(s) 172, 350, 530, 611, 620
XceI RCATGY 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XhoI CTCGAG 1 cut(s) 626
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.