AT5G62810

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25220147 .. 25223789
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62810.1

Sequence Viewer

Length: 1524 bp
ATGGCAACTCATCAGCAAACGCAACCTCCTTCCGATTTTCCCGCTCTTGCCGATGAAAATTCCCAGATTCCAGAGGCTACTAAGCCTGCTAATGAGGTTCAGCAAGCTACCATAGCTCAGGATCCTCCAACATCTGTGTTTAAGAATTCTGAACCAATACGGGAGGATCAAATTCAGAACGCTATCAAATTCCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGATCTTTTCTTGAGAGGAAAGGTCTCACTAAAGAAGAGATTGACGAAGCTTTCCGCCGTGTTCCTGATCCACCACCAAGTTCGCAGACAACTGTTACAACAAGTCAAGATGGACAGCAAGCAGTGTCAACTGTTCAGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCATTGTGACTCCACAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTTGGAGTACTTGCAGCCTCTGGTGCCGGTACAGCTGTTTTTATTAAGAGATCTCTCATACCCAGATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAGCTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGGCTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGAAATATTTTGAGGACTTAACGCACCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGAGCAATAATATCCGTAAGCTTGAAGGGCAATCCAACAACATCCCAAAGATTTATTCAGCTGATCAAGAGGTTTATAATGGTTCGGTCACTACAGCAAGGAAACCCTATACAAATGGCAGCAATGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGGCACCAGCTGATTCGTCGGCGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAGAGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCCAATCCAAACCAACCACTATCAGATCCACGCATTGCTCCCAAATCAAAGCCATGGGACTATGGTCAAGCGCCGCAAGACGAGAGTTCCAATGGTCAATGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGATACGAGACAACAACAGCGGCGCGTTTCACTGCTAACCAAAATGAAACAAGTACAATGGAACCAGCAGCTTTCCAGAGGCAACGATCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAGAAGCAGTCGAGGCCATTCGCCGTCCTAAGCCACAAGCTAAGATAGACCAAGAAGCAGCTGCTAGTGATGGCCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAATTCTCCGAATCTGGTGGTGATGGGTCAGGAGGAATTAAGATCGCAGAGATACAAGAAGAAACAGAACAGCAACATATCAGCCAGGAAGGGAACTAA

Protein Analysis

507

Amino Acids

55.59

Weight (kDa)

5.71

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 54 - 98 2.8e-13 Pex14 N-terminal domain
PEX14-like_2nd PF23020 148 - 267 5.8e-52 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 324 - 372 7e-13 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
Acc65I GGTACC 2 cut(s) 456, 1285
AccB1I GGYRCC 5 cut(s) 456, 497, 946, 964, 1285
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 1 cut(s) 1216
AciI CCGC 7 cut(s) 42, 289, 656, 944, 1055, 1130, 1211
AclWI GGATC 7 cut(s) 116, 129, 174, 296, 1000, 1076, 1173
AcoI YGGCCR 1 cut(s) 1387
AcsI RAATTY 5 cut(s) 58, 145, 171, 188, 1427
AcuI CTGAAG 2 cut(s) 611, 642
AcyI GRCGYC 1 cut(s) 965
AfaI GTAC 6 cut(s) 458, 483, 505, 759, 1246, 1287
AflIII ACRYGT 1 cut(s) 914
AgsI TTSAA 2 cut(s) 800, 1029
AjnI CCWGG 3 cut(s) 548, 674, 1509
AjuI GAANNNNNNNTTGG 2 cut(s) 814, 846
Alw26I GTCTC 2 cut(s) 263, 1193
AlwI GGATC 7 cut(s) 116, 129, 174, 296, 1000, 1076, 1173
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 1329, 1387
ApoI RAATTY 5 cut(s) 58, 145, 171, 188, 1427
Asp718I GGTACC 2 cut(s) 456, 1285
AspLEI GCGC 3 cut(s) 967, 1129, 1216
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 1 cut(s) 1457
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BalI TGGCCA 1 cut(s) 1389
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 5 cut(s) 456, 497, 946, 964, 1285
BccI CCATC 3 cut(s) 338, 1379, 1442
BceAI ACGGC 2 cut(s) 276, 1323
BciT130I CCWGG 3 cut(s) 550, 676, 1511
BciVI GTATCC 1 cut(s) 1187
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 263, 1193
BfaI CTAG 3 cut(s) 612, 1176, 1380
BfmI CTRYAG 4 cut(s) 390, 630, 636, 867
BfoI RGCGCY 2 cut(s) 968, 1130
BfuI GTATCC 1 cut(s) 1187
BglII AGATCT 2 cut(s) 236, 524
BlpI GCTNAGC 1 cut(s) 616
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 3 cut(s) 550, 676, 1511
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 8 cut(s) 123, 458, 499, 554, 948, 966, 1254, 1287
BmrFI CCNGG 3 cut(s) 550, 676, 1511
BmsI GCATC 2 cut(s) 592, 941
BoxI GACNNNNGTC 1 cut(s) 1119
BpmI CTGGAG 1 cut(s) 1287
Bpu10I CCTNAGC 2 cut(s) 117, 1344
Bpu1102I GCTNAGC 1 cut(s) 616
BpuEI CTTGAG 2 cut(s) 266, 796
BsaBI GATNNNNATC 2 cut(s) 544, 931
BsaHI GRCGYC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 6 cut(s) 203, 549, 675, 1109, 1182, 1311
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 2 cut(s) 1304, 1390
Bse3DI GCAATG 2 cut(s) 904, 1089
Bse8I GATNNNNATC 2 cut(s) 544, 931
BseBI CCWGG 3 cut(s) 550, 676, 1511
BseDI CCNNGG 6 cut(s) 203, 549, 675, 1109, 1182, 1311
BseGI GGATG 2 cut(s) 816, 973
BseJI GATNNNNATC 2 cut(s) 544, 931
BseMI GCAATG 2 cut(s) 904, 1089
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 1304, 1390
BseRI GAGGAG 2 cut(s) 927, 1029
Bsh1236I CGCG 1 cut(s) 1216
BshFI GGCC 2 cut(s) 1331, 1389
BshNI GGYRCC 5 cut(s) 456, 497, 946, 964, 1285
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 1127
BsmAI GTCTC 2 cut(s) 263, 1193
BsmFI GGGAC 1 cut(s) 1127
BsnI GGCC 2 cut(s) 1331, 1389
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 616
Bsp19I CCATGG 2 cut(s) 1109, 1311
BspACI CCGC 7 cut(s) 42, 289, 656, 944, 1055, 1130, 1211
BspANI GGCC 2 cut(s) 1331, 1389
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 1216
BspLI GGNNCC 8 cut(s) 123, 458, 499, 554, 948, 966, 1254, 1287
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 7 cut(s) 116, 129, 174, 296, 1000, 1076, 1173
BspT107I GGYRCC 5 cut(s) 456, 497, 946, 964, 1285
BspTNI GGTCTC 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 904, 1089
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 2 cut(s) 1304, 1390
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 6 cut(s) 203, 549, 675, 1109, 1182, 1311
BssNI GRCGYC 1 cut(s) 965
BssT1I CCWWGG 2 cut(s) 1109, 1311
Bst2UI CCWGG 3 cut(s) 550, 676, 1511
Bst4CI ACNGT 2 cut(s) 328, 367
Bst6I CTCTTC 2 cut(s) 264, 705
BstACI GRCGYC 1 cut(s) 965
BstAPI GCANNNNNTGC 1 cut(s) 929
BstC8I GCNNGC 3 cut(s) 87, 105, 354
BstDEI CTNAG 5 cut(s) 81, 117, 616, 1344, 1356
BstDSI CCRYGG 3 cut(s) 1109, 1182, 1311
BstF5I GGATG 2 cut(s) 816, 973
BstFNI CGCG 1 cut(s) 1216
BstH2I RGCGCY 2 cut(s) 968, 1130
BstHHI GCGC 3 cut(s) 967, 1129, 1216
BstMAI GTCTC 2 cut(s) 263, 1193
BstNI CCWGG 3 cut(s) 550, 676, 1511
BstNSI RCATGY 1 cut(s) 1054
BstPAI GACNNNNGTC 1 cut(s) 1119
BstSCI CCNGG 3 cut(s) 548, 674, 1509
BstSFI CTRYAG 4 cut(s) 390, 630, 636, 867
BstUI CGCG 1 cut(s) 1216
BstX2I RGATCY 5 cut(s) 121, 236, 524, 1081, 1178
BstYI RGATCY 5 cut(s) 121, 236, 524, 1081, 1178
BsuI GTATCC 1 cut(s) 1187
BsuRI GGCC 2 cut(s) 1331, 1389
BtgI CCRYGG 3 cut(s) 1109, 1182, 1311
BtgZI GCGATG 1 cut(s) 1419
BtsCI GGATG 2 cut(s) 816, 973
BtsI GCAGTG 2 cut(s) 363, 1221
BtsIMutI CAGTG 2 cut(s) 363, 1221
Cac8I GCNNGC 3 cut(s) 87, 105, 354
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 3 cut(s) 967, 1129, 1216
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 553
Csp6I GTAC 6 cut(s) 457, 482, 504, 758, 1245, 1286
CviAII CATG 6 cut(s) 461, 988, 1051, 1110, 1281, 1312
CviQI GTAC 6 cut(s) 457, 482, 504, 758, 1245, 1286
DdeI CTNAG 5 cut(s) 81, 117, 616, 1344, 1356
DinI GGCGCC 1 cut(s) 966
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 1387
Eam1104I CTCTTC 2 cut(s) 264, 705
EarI CTCTTC 2 cut(s) 264, 705
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 2 cut(s) 1109, 1311
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 611, 642
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 3 cut(s) 548, 674, 1509
EcoT14I CCWWGG 2 cut(s) 1109, 1311
EgeI GGCGCC 1 cut(s) 966
EheI GGCGCC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 1109, 1311
FaeI CATG 6 cut(s) 464, 991, 1054, 1113, 1284, 1315
FaqI GGGAC 1 cut(s) 1127
FatI CATG 6 cut(s) 460, 987, 1050, 1109, 1280, 1311
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 838
FokI GGATG 2 cut(s) 803, 960
FspBI CTAG 3 cut(s) 612, 1176, 1380
GlaI GCGC 3 cut(s) 966, 1128, 1215
GsuI CTGGAG 1 cut(s) 1287
HaeII RGCGCY 2 cut(s) 968, 1130
HaeIII GGCC 2 cut(s) 1331, 1389
HapII CCGG 1 cut(s) 501
HhaI GCGC 3 cut(s) 967, 1129, 1216
Hin1I GRCGYC 1 cut(s) 965
Hin1II CATG 6 cut(s) 464, 991, 1054, 1113, 1284, 1315
Hin6I GCGC 3 cut(s) 965, 1127, 1214
HinP1I GCGC 3 cut(s) 965, 1127, 1214
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 2 cut(s) 282, 794
HinfI GANTC 4 cut(s) 67, 421, 956, 1436
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 1457
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 8 cut(s) 34, 151, 177, 591, 667, 1081, 1193, 1435
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 964
HpyAV CCTTC 4 cut(s) 39, 794, 1035, 1508
HpyCH4III ACNGT 2 cut(s) 328, 367
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 4 cut(s) 385, 488, 638, 932
HpyF3I CTNAG 5 cut(s) 81, 117, 616, 1344, 1356
HpySE526I ACGT 1 cut(s) 916
Hsp92I GRCGYC 1 cut(s) 965
Hsp92II CATG 6 cut(s) 464, 991, 1054, 1113, 1284, 1315
HspAI GCGC 3 cut(s) 965, 1127, 1214
KasI GGCGCC 1 cut(s) 964
KpnI GGTACC 2 cut(s) 460, 1289
Ksp22I TGATCA 1 cut(s) 838
LmnI GCTCC 3 cut(s) 406, 412, 1099
LweI GCATC 2 cut(s) 592, 941
MaeI CTAG 3 cut(s) 612, 1176, 1380
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 4 cut(s) 328, 418, 862, 1410
MbiI CCGCTC 1 cut(s) 44
MboII GAAGA 9 cut(s) 246, 281, 584, 587, 604, 635, 722, 1429, 1496
MflI RGATCY 5 cut(s) 121, 236, 524, 1081, 1178
MlsI TGGCCA 1 cut(s) 1389
MluCI AATT 7 cut(s) 58, 145, 171, 188, 561, 1427, 1461
MluNI TGGCCA 1 cut(s) 1389
Mly113I GGCGCC 1 cut(s) 965
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 4 cut(s) 152, 457, 549, 834
Mox20I TGGCCA 1 cut(s) 1389
MscI TGGCCA 1 cut(s) 1389
MseI TTAA 6 cut(s) 141, 519, 543, 734, 1044, 1464
Msp20I TGGCCA 1 cut(s) 1389
MspA1I CMGCKG 5 cut(s) 509, 836, 953, 1211, 1376
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 3 cut(s) 550, 676, 1511
MvaI CCWGG 3 cut(s) 550, 676, 1511
MvnI CGCG 1 cut(s) 1216
NarI GGCGCC 1 cut(s) 965
NcoI CCATGG 2 cut(s) 1109, 1311
NlaIII CATG 6 cut(s) 464, 991, 1054, 1113, 1284, 1315
NlaIV GGNNCC 8 cut(s) 123, 458, 499, 554, 948, 966, 1254, 1287
NmuCI GTSAC 2 cut(s) 418, 862
NspI RCATGY 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 922
PfeI GAWTC 3 cut(s) 67, 956, 1436
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 415
PshAI GACNNNNGTC 1 cut(s) 1119
PsiI TTATAA 1 cut(s) 852
Psp6I CCWGG 3 cut(s) 548, 674, 1509
PspGI CCWGG 3 cut(s) 548, 674, 1509
PspN4I GGNNCC 8 cut(s) 123, 458, 499, 554, 948, 966, 1254, 1287
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 5 cut(s) 121, 236, 524, 1081, 1178
PvuII CAGCTG 4 cut(s) 509, 836, 953, 1376
RsaI GTAC 6 cut(s) 458, 483, 505, 759, 1246, 1287
RsaNI GTAC 6 cut(s) 457, 482, 504, 758, 1245, 1286
SaqAI TTAA 6 cut(s) 141, 519, 543, 734, 1044, 1464
Sau96I GGNCC 1 cut(s) 553
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 550, 676, 1511
SfaNI GCATC 2 cut(s) 592, 941
SfcI CTRYAG 4 cut(s) 390, 630, 636, 867
SfoI GGCGCC 1 cut(s) 966
SinI GGWCC 1 cut(s) 553
SmiI ATTTAAAT 1 cut(s) 544
SmlI CTYRAG 2 cut(s) 245, 775
SmoI CTYRAG 2 cut(s) 245, 775
Sse9I AATT 7 cut(s) 58, 145, 171, 188, 561, 1427, 1461
SsiI CCGC 7 cut(s) 42, 289, 656, 944, 1055, 1130, 1211
SspDI GGCGCC 1 cut(s) 964
SspI AATATT 1 cut(s) 722
SspMI CTAG 3 cut(s) 612, 1176, 1380
StyD4I CCNGG 3 cut(s) 548, 674, 1509
StyI CCWWGG 2 cut(s) 1109, 1311
SwaI ATTTAAAT 1 cut(s) 544
TaaI ACNGT 2 cut(s) 328, 367
TaiI ACGT 1 cut(s) 919
TaqI TCGA 1 cut(s) 1326
TaqII GACCGA 1 cut(s) 850
TasI AATT 7 cut(s) 58, 145, 171, 188, 561, 1427, 1461
TatI WGTACW 3 cut(s) 481, 757, 1244
TauI GCSGC 5 cut(s) 659, 947, 1057, 1132, 1214
TfiI GAWTC 3 cut(s) 67, 956, 1436
Tru1I TTAA 6 cut(s) 141, 519, 543, 734, 1044, 1464
Tru9I TTAA 6 cut(s) 141, 519, 543, 734, 1044, 1464
TscAI CASTG 2 cut(s) 363, 1228
TseFI GTSAC 2 cut(s) 418, 862
Tsp45I GTSAC 2 cut(s) 418, 862
TspDTI ATGAA 4 cut(s) 69, 723, 782, 1251
TspGWI ACGGA 2 cut(s) 779, 1199
TspRI CASTG 2 cut(s) 363, 1228
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 5 cut(s) 58, 145, 171, 188, 1427
XceI RCATGY 1 cut(s) 1054
XspI CTAG 3 cut(s) 612, 1176, 1380
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.