pycom06g15540

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
20058611 .. 20062514
3904 bp
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UTR
Exon/CDS
Intron
pycom06g15540.1

Sequence Viewer

Length: 1596 bp
ATGGAGGACAAAGAGAAGAACCCAGCAGGGCTTGCTCAACCCACAATTGAGGGTCAGCAAGATGCTGGGGCTGAGCCTGCTAAGCAAAGTTCTACACCGTCGGTGTTTGTGAATTCCGAACCAATGAGGGAGGAACAAGTGCAAAATGCTGTGAAATTCCTTTCACACCCGAAAGTTAGGGGCTCTCCTGTTGTTTACAGACGGTCTTTTCTCGAGAAGAAGGGTCTCACAAAAGAAGAGATTGATGAAGCGTTTCGGCGTGTGCCTGACCCACCTTCAGGTACGCAGGCAACTACTGGAAATCAAGCAGATGGACAGGTGAAGACATCGTCAAATGTTCAAGCACAAAATACAACTCAAGCTTTACAGCCTTCACCCACTGCTCCCACTAACGTCATTTCCCCTGTGGGTGCATTATCTGGGTATAGATTTCGCTGGTTTGATGCCGTTTTTGCCATAGGATTCCTAACACTCTCTGGTTGTGGAACAGCTGTATTAATTAAGAAATCTCTTATTCCTAGATTGAAGGCTTGGATACGCAAGGTTGTATTGGAAGATGAGAATGATGTTGAAAACAAAGTTGATATGAAACCAAGTTCAGCAGAAGAAGCTGCGGCAGCTGCTAAAACAGCCGCAGCTGCAGCATCAGATGTGGCAAAAGTAATCCAGGAAATGCTGAATTCTAAGACCGAAGAGAGGAAACACTTCATGGAACTCATGAGTTTGTTAGATGTGCAAGTGCAAGAAATGAAGTCAATGAGCAATTCCATACGGAAATTGGAAGGAGAAACAAAAGCCTCAAGAACCTCTCTTGTCGATCATGAAGACAATCGCATCGCTATCACAAATTCAAAGCAACAATATGTGAACGGCAAGGCAGAGTATGACGTGCGCTCAGTGCAATCTTCCTCTGCTGCTGCATCTATGGAACCATCTGCTGCACCTCACCCAAAGTCTTATATGGACATCATGGCCATGGTACAAAGAGGGGAGAAACCTCCTAATGTCAAAGACATTGATGATTCACCCCCCAACCCTAATCAGCAACTATCAAATCCTCGCTTGGCACCTAGAGCTAAGCCTTGGGAAGTTGGTCAGGTCCAAAACAACTCGAGCCAAGTACTTCAGTCTCAAGTAAGCAGTGAAGGTTTGAATTCCAGCATTCAGGACAATGGGCTCAATTATCTGTCAAACGGTGACAGTACAGTGTTGCGGTGGCAGCAGCAGCAGCGGAAAAATCCCAGAATTACTGAGATAGAAAATGAAGTCAATGGAGGGTCTTATGGCGTACGAACTAGAGAGCAACCAGTTCAGCCAGTTCAGCGTACATGGGTTCCTCCCCAGCCACCCCCAGTTGCAATGGCAGCAGCAGCTGAAGCCATCCGACGGCCAAAACCACCAGTGCAGAAAGAACAGCTGGGTAACGATCTGCCCTTTGCACATCCATCAGAAGTGACCGATGGCCCATCGCAAGGGACCGATGAGTTGCAGAGGATAACAAAGATAGCTGAATCTGGAGGTGCACTGGAGCAAATCAATGGAAGCTCACCGCTGGGCTCAACAACTGAGATACAAGAAGAGGAAGTTAGCTATTAG

Protein Analysis

532

Amino Acids

57.89

Weight (kDa)

5.6

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 43 - 87 2e-13 Pex14 N-terminal domain
PEX14-like_2nd PF23020 143 - 261 1.1e-52 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 315 - 363 3.6e-16 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1066
AciI CCGC 5 cut(s) 614, 633, 1213, 1231, 1550
AcoI YGGCCR 2 cut(s) 972, 1388
AcsI RAATTY 5 cut(s) 112, 155, 679, 847, 1153
AcuI CTGAAG 3 cut(s) 261, 1109, 1395
AfaI GTAC 6 cut(s) 283, 981, 1122, 1204, 1290, 1327
AfiI CCNNNNNNNGG 4 cut(s) 278, 696, 1386, 1472
AgsI TTSAA 5 cut(s) 341, 526, 572, 852, 1153
AjiI CACGTC 1 cut(s) 889
AjnI CCWGG 1 cut(s) 666
Alw21I GWGCWC 1 cut(s) 1525
Alw26I GTCTC 2 cut(s) 230, 1134
Alw44I GTGCAC 1 cut(s) 1521
AlwNI CAGNNNCTG 1 cut(s) 1373
Ama87I CYCGRG 2 cut(s) 212, 1111
AoxI GGCC 3 cut(s) 972, 1388, 1462
ApaLI GTGCAC 1 cut(s) 1521
ApoI RAATTY 5 cut(s) 112, 155, 679, 847, 1153
AseI ATTAAT 1 cut(s) 497
Asp700I GAANNNNTTC 2 cut(s) 252, 704
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 3 cut(s) 1099, 1463, 1476
AsuHPI GGTGA 6 cut(s) 331, 366, 938, 1017, 1208, 1539
AvaI CYCGRG 2 cut(s) 212, 1111
AvaII GGWCC 2 cut(s) 1099, 1476
BaeGI GKGCMC 1 cut(s) 1525
BalI TGGCCA 1 cut(s) 974
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 3 cut(s) 185, 1179, 1559
BbsI GAAGAC 2 cut(s) 329, 831
Bbv12I GWGCWC 1 cut(s) 1525
BccI CCATC 6 cut(s) 305, 940, 1388, 1453, 1454, 1474
BceAI ACGGC 3 cut(s) 431, 886, 1403
BciT130I CCWGG 1 cut(s) 668
BciVI GTATCC 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 230, 1134
BfaI CTAG 3 cut(s) 519, 1071, 1296
BfmI CTRYAG 1 cut(s) 639
BfuI GTATCC 1 cut(s) 528
BlpI GCTNAGC 3 cut(s) 72, 81, 1077
BmcAI AGTACT 1 cut(s) 1122
Bme1390I CCNGG 1 cut(s) 668
Bme18I GGWCC 2 cut(s) 1099, 1476
BmeT110I CYCGRG 2 cut(s) 212, 1111
BmgBI CACGTC 1 cut(s) 889
BmgT120I GGNCC 3 cut(s) 1099, 1463, 1476
BmiI GGNNCC 4 cut(s) 930, 1068, 1335, 1477
BmrFI CCNGG 1 cut(s) 668
BmrI ACTGGG 1 cut(s) 1346
BmsI GCATC 5 cut(s) 52, 433, 653, 843, 929
BmuI ACTGGG 1 cut(s) 1346
BpiI GAAGAC 2 cut(s) 329, 831
BpmI CTGGAG 2 cut(s) 1536, 1547
Bpu1102I GCTNAGC 3 cut(s) 72, 81, 1077
BpuEI CTTGAG 3 cut(s) 342, 784, 1116
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 975, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 696, 1386, 1472
Bse1I ACTGG 6 cut(s) 301, 1307, 1316, 1352, 1400, 1530
Bse3DI GCAATG 1 cut(s) 1365
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 975, 1082
BseGI GGATG 2 cut(s) 1380, 1441
BseLI CCNNNNNNNGG 4 cut(s) 278, 696, 1386, 1472
BseMI GCAATG 1 cut(s) 1365
BseMII CTCAG 4 cut(s) 63, 909, 1242, 1557
BseNI ACTGG 6 cut(s) 301, 1307, 1316, 1352, 1400, 1530
BseSI GKGCMC 1 cut(s) 1525
BseYI CCCAGC 5 cut(s) 22, 65, 1341, 1417, 1552
BsgI GTGCAG 2 cut(s) 924, 1424
BshFI GGCC 3 cut(s) 974, 1390, 1464
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 1525
BsiHKCI CYCGRG 2 cut(s) 212, 1111
BsiWI CGTACG 1 cut(s) 1288
BslFI GGGAC 1 cut(s) 1489
BslI CCNNNNNNNGG 4 cut(s) 278, 696, 1386, 1472
BsmAI GTCTC 2 cut(s) 230, 1134
BsmFI GGGAC 1 cut(s) 1489
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 3 cut(s) 974, 1390, 1464
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 2 cut(s) 212, 1111
Bsp1286I GDGCHC 4 cut(s) 185, 1179, 1525, 1559
Bsp143I GATC 2 cut(s) 817, 1426
Bsp1720I GCTNAGC 3 cut(s) 72, 81, 1077
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 5 cut(s) 614, 633, 1213, 1231, 1550
BspANI GGCC 3 cut(s) 974, 1390, 1464
BspCNI CTCAG 4 cut(s) 64, 908, 1243, 1558
BspHI TCATGA 2 cut(s) 717, 820
BspLI GGNNCC 4 cut(s) 930, 1068, 1335, 1477
BspMAI CTGCAG 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 1066
BspTNI GGTCTC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 1365
BsrI ACTGG 6 cut(s) 301, 1307, 1316, 1352, 1400, 1530
BssECI CCNNGG 2 cut(s) 975, 1082
BssMI GATC 2 cut(s) 817, 1426
BssT1I CCWWGG 2 cut(s) 975, 1082
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 5 cut(s) 99, 204, 1196, 1202, 1207
Bst6I CTCTTC 3 cut(s) 231, 687, 1572
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 33, 78, 288
BstDEI CTNAG 7 cut(s) 72, 81, 684, 895, 1077, 1251, 1566
BstDSI CCRYGG 1 cut(s) 975
BstF5I GGATG 2 cut(s) 1380, 1441
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 2 cut(s) 820, 1429
BstMAI GTCTC 2 cut(s) 230, 1134
BstMBI GATC 2 cut(s) 817, 1426
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 1525
BstV2I GAAGAC 2 cut(s) 329, 831
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 3 cut(s) 974, 1390, 1464
BtgI CCRYGG 1 cut(s) 975
BtgZI GCGATG 2 cut(s) 820, 1452
BtrI CACGTC 1 cut(s) 889
BtsCI GGATG 2 cut(s) 1380, 1441
BtsI GCAGTG 2 cut(s) 378, 1147
BtsIMutI CAGTG 6 cut(s) 378, 903, 1147, 1212, 1407, 1523
Cac8I GCNNGC 3 cut(s) 33, 78, 288
CaiI CAGNNNCTG 1 cut(s) 1373
CciI TCATGA 2 cut(s) 717, 820
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 3 cut(s) 1099, 1463, 1476
Csp6I GTAC 6 cut(s) 282, 980, 1121, 1203, 1289, 1326
CviAII CATG 6 cut(s) 709, 718, 821, 970, 976, 1329
CviQI GTAC 6 cut(s) 282, 980, 1121, 1203, 1289, 1326
DdeI CTNAG 7 cut(s) 72, 81, 684, 895, 1077, 1251, 1566
DpnI GATC 2 cut(s) 819, 1428
DpnII GATC 2 cut(s) 817, 1426
EaeI YGGCCR 2 cut(s) 972, 1388
Eam1104I CTCTTC 3 cut(s) 231, 687, 1572
EarI CTCTTC 3 cut(s) 231, 687, 1572
Eco130I CCWWGG 2 cut(s) 975, 1082
Eco24I GRGCYC 3 cut(s) 185, 1179, 1559
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 1099, 1476
Eco57I CTGAAG 3 cut(s) 261, 1109, 1395
Eco88I CYCGRG 2 cut(s) 212, 1111
EcoRI GAATTC 3 cut(s) 112, 679, 1153
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 2 cut(s) 975, 1082
EcoT38I GRGCYC 3 cut(s) 185, 1179, 1559
ErhI CCWWGG 2 cut(s) 975, 1082
FaeI CATG 6 cut(s) 712, 721, 824, 973, 979, 1332
FaqI GGGAC 1 cut(s) 1489
FatI CATG 6 cut(s) 708, 717, 820, 969, 975, 1328
FokI GGATG 2 cut(s) 1367, 1428
FriOI GRGCYC 3 cut(s) 185, 1179, 1559
FspBI CTAG 3 cut(s) 519, 1071, 1296
GlaI GCGC 1 cut(s) 893
GsaI CCCAGC 5 cut(s) 26, 69, 1345, 1421, 1556
GsuI CTGGAG 2 cut(s) 1536, 1547
HaeIII GGCC 3 cut(s) 974, 1390, 1464
HhaI GCGC 1 cut(s) 894
Hin1II CATG 6 cut(s) 712, 721, 824, 973, 979, 1332
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 462, 1022, 1511
HphI GGTGA 6 cut(s) 331, 366, 938, 1017, 1208, 1539
Hpy166II GTNNAC 3 cut(s) 196, 868, 1523
Hpy188I TCNGA 4 cut(s) 118, 649, 1385, 1450
Hpy188III TCNNGA 7 cut(s) 212, 214, 718, 801, 821, 1166, 1515
Hpy8I GTNNAC 3 cut(s) 196, 868, 1523
Hpy99I CGWCG 2 cut(s) 103, 1389
HpyAV CCTTC 6 cut(s) 214, 285, 381, 520, 776, 1139
HpyCH4III ACNGT 5 cut(s) 99, 204, 1196, 1202, 1207
HpyCH4IV ACGT 2 cut(s) 393, 888
HpyF3I CTNAG 7 cut(s) 72, 81, 684, 895, 1077, 1251, 1566
HpySE526I ACGT 2 cut(s) 393, 888
Hsp92II CATG 6 cut(s) 712, 721, 824, 973, 979, 1332
HspAI GCGC 1 cut(s) 892
Kzo9I GATC 2 cut(s) 817, 1426
LmnI GCTCC 2 cut(s) 388, 1528
LweI GCATC 5 cut(s) 52, 433, 653, 843, 929
MaeI CTAG 3 cut(s) 519, 1071, 1296
MaeII ACGT 2 cut(s) 393, 888
MaeIII GTNAC 3 cut(s) 1196, 1421, 1453
MalI GATC 2 cut(s) 819, 1428
MboI GATC 2 cut(s) 817, 1426
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 4 cut(s) 185, 1179, 1525, 1559
MlsI TGGCCA 1 cut(s) 974
MluNI TGGCCA 1 cut(s) 974
MmeI TCCRAC 1 cut(s) 1408
Mox20I TGGCCA 1 cut(s) 974
MroXI GAANNNNTTC 2 cut(s) 252, 704
MscI TGGCCA 1 cut(s) 974
MseI TTAA 2 cut(s) 497, 501
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 974
MspA1I CMGCKG 7 cut(s) 491, 620, 638, 1231, 1373, 1417, 1552
MspR9I CCNGG 1 cut(s) 668
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 1161
MvaI CCWGG 1 cut(s) 668
NcoI CCATGG 1 cut(s) 975
NdeII GATC 2 cut(s) 817, 1426
NlaIII CATG 6 cut(s) 712, 721, 824, 973, 979, 1332
NlaIV GGNNCC 4 cut(s) 930, 1068, 1335, 1477
NmuCI GTSAC 2 cut(s) 1196, 1453
PacI TTAATTAA 1 cut(s) 501
PaeR7I CTCGAG 2 cut(s) 212, 1111
PagI TCATGA 2 cut(s) 717, 820
PctI GAATGC 1 cut(s) 1161
PdmI GAANNNNTTC 2 cut(s) 252, 704
PfeI GAWTC 3 cut(s) 462, 1022, 1511
Pfl23II CGTACG 1 cut(s) 1288
PflFI GACNNNGTC 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 666
PspFI CCCAGC 5 cut(s) 22, 65, 1341, 1417, 1552
PspGI CCWGG 1 cut(s) 666
PspLI CGTACG 1 cut(s) 1288
PspN4I GGNNCC 4 cut(s) 930, 1068, 1335, 1477
PspPI GGNCC 3 cut(s) 1099, 1463, 1476
PspXI VCTCGAGB 1 cut(s) 1111
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 1373
PsyI GACNNNGTC 1 cut(s) 328
PvuII CAGCTG 5 cut(s) 491, 620, 638, 1373, 1417
RsaI GTAC 6 cut(s) 283, 981, 1122, 1204, 1290, 1327
RsaNI GTAC 6 cut(s) 282, 980, 1121, 1203, 1289, 1326
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 2 cut(s) 497, 501
Sau3AI GATC 2 cut(s) 817, 1426
Sau96I GGNCC 3 cut(s) 1099, 1463, 1476
ScaI AGTACT 1 cut(s) 1122
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 4 cut(s) 185, 1179, 1525, 1559
SfaNI GCATC 5 cut(s) 52, 433, 653, 843, 929
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 2 cut(s) 212, 1111
SinI GGWCC 2 cut(s) 1099, 1476
SlaI CTCGAG 2 cut(s) 212, 1111
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 5 cut(s) 212, 357, 799, 1111, 1131
SmoI CTYRAG 5 cut(s) 212, 357, 799, 1111, 1131
SsiI CCGC 5 cut(s) 614, 633, 1213, 1231, 1550
SspMI CTAG 3 cut(s) 519, 1071, 1296
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 2 cut(s) 975, 1082
TaaI ACNGT 5 cut(s) 99, 204, 1196, 1202, 1207
TaiI ACGT 2 cut(s) 396, 891
TaqI TCGA 3 cut(s) 213, 816, 1112
TaqII GACCGA 3 cut(s) 704, 1472, 1493
TatI WGTACW 2 cut(s) 1120, 1202
TauI GCSGC 2 cut(s) 617, 635
TfiI GAWTC 3 cut(s) 462, 1022, 1511
Tru1I TTAA 2 cut(s) 497, 501
Tru9I TTAA 2 cut(s) 497, 501
TscAI CASTG 6 cut(s) 385, 903, 1147, 1212, 1407, 1530
TseFI GTSAC 2 cut(s) 1196, 1453
Tsp45I GTSAC 2 cut(s) 1196, 1453
TspDTI ATGAA 6 cut(s) 261, 602, 697, 764, 837, 1278
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 6 cut(s) 385, 903, 1147, 1212, 1407, 1530
Tth111I GACNNNGTC 1 cut(s) 328
VneI GTGCAC 1 cut(s) 1521
VpaK11BI GGWCC 2 cut(s) 1099, 1476
VspI ATTAAT 1 cut(s) 497
XapI RAATTY 5 cut(s) 112, 155, 679, 847, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XhoI CTCGAG 2 cut(s) 212, 1111
XmnI GAANNNNTTC 2 cut(s) 252, 704
XspI CTAG 3 cut(s) 519, 1071, 1296
ZrmI AGTACT 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.