Rroxscaffold_3G00261990

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
56106814 .. 56110828
4015 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00261990.1

Sequence Viewer

Length: 1563 bp
ATGGCCTCTCAATCCTCGGAGGACAAAGCAGAAAACCGAGGTCTTGCTGAGGCTCAGCAAGATGTTGCAGCTGAGCCTCCTAAGCAAACTTCTAGCCCATCGGTGTTTGTGAATTCCGAACCAATGAGAGAGGACCAAGTGCAAAATGCTGTGAAGTTTCTTTCGCACCCCAAAGTTAAGGGCTCTCCTGTCATCTACAGGCGCTCTTTTCTTGAGAAGAAGGGGCTTACGAAGGAGGAGATTGATGAAGCGTTTCGGCGTGTGCCTGACCCACCTCCAAGTGCACAGGCAACTACTGCAAATCAAGCTGATGGACAAGCGAAGACAACAAACATTCAGGCACAAAGTTCAAATCAAACTTTGCAGCCTGCTAGTTCTACTTCGGTGGGTACCTTAGCTCGGTATAGATTCCACTGGTCTCATGCTATTCTTGCTGTAGGATTAATGGCAGCTTCAGGTGCTGGAACTGCTTTACTTATTAAGAATGCTATTATTCCAAGGTTGAGGTCTTGGGTACGAAAGGTTGTATTGGAGGATGACAATGACGTTGAGAAGAAAACTGACACGAAACCCAGTTTAGCAGAAGAAGCTGCAGCAGCGGCTAAATCAGCTGCAGCTGCAGCAGCAGATGTGGCAAAAAAAGCAAGCCAAGAAATGCTGAATTCTAAGACTGAAGAGAGGAAATACTTTGGGGAACTTATGAGTTTGTTAGATGTGCAAGTGCAAGAAATGAAGTCAATGAGTAATTCCATACGGAAATTGGAAGGAGAAACGAGGGCCTCAAGAGCCTCTCTTGTTGATCACGAAGATAGTCGACTCACAGGCACAAAGTCAAAGCAACAATATGTGAATGGCAAGGCAGAGTACGACATGCGCTCGGTGCAATCTTTCTCAGCTCCTGCATCTGTGGAACCGTCTGCTGCACCTCACTCAAAGTCTTATATGGAGATCATGGCCATGGTACAAAGAGGGGAGAAACCTCCTAATGTCAGAGAAATTGATGATTTACCACCCAATCCTAATCAGCAGCCATCAAATCCTCGCTTGGTTCCTAGAGCTAAGCCTTGGGAGCTTGGTCAGACCCAAAACAACTCAAGCCAAGTATATCAGTCCCATACAAGTAGCGAAGCCTTCAGTTCGAGCACGCAGGAGAATGGGCTCAATTATTTAAATGGTGACAGTTCAGTGCCTTGGTGGCAGCGGAAAACTCCCAGTATCACAGAGATAGAAAATGAAGATGAAGTCAAGGCAGCTAGTTCGCAAGTAGTTAGGCAGCCGGTTCAGCGTGCATGGGTTCCTCCCCAGCCACCCCCAGTTGCAATGCCAGAAGCAGCTGAAGCCATCCGACGGCCAAAACCATCAGTGCAGAGAGAATCTCTGGGTAATGATCAGGCCGTAGCACGTACTTCATCAGATGTGACCGATGAGTTGCAAAGGGTAACAAAAATATCTGAGTCTGGAGGTGCATTGGAGATGAACAATGGGAATGCTGCAGAAATCAGTAATGGGAATTCATATCTGAACTCTACTGAGATACATGAAGAGCAAGAAAACTATGAGTAA

Protein Analysis

520

Amino Acids

56.89

Weight (kDa)

5.66

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 43 - 87 1.7e-13 Pex14 N-terminal domain
PEX14-like_2nd PF23020 136 - 255 1.7e-55 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 309 - 357 8.2e-16 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 814
AciI CCGC 2 cut(s) 599, 1201
AcoI YGGCCR 2 cut(s) 954, 1349
AcsI RAATTY 3 cut(s) 112, 661, 1510
AcuI CTGAAG 4 cut(s) 438, 693, 1117, 1356
AfaI GTAC 5 cut(s) 391, 516, 866, 963, 1405
AfiI CCNNNNNNNGG 2 cut(s) 399, 1347
AgsI TTSAA 1 cut(s) 351
Alw21I GWGCWC 2 cut(s) 286, 1145
Alw26I GTCTC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 282
AlwNI CAGNNNCTG 2 cut(s) 461, 899
AoxI GGCC 5 cut(s) 3, 777, 954, 1349, 1392
ApaLI GTGCAC 1 cut(s) 282
ApoI RAATTY 3 cut(s) 112, 661, 1510
AseI ATTAAT 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 204, 876
AspS9I GGNCC 2 cut(s) 133, 777
AsuHPI GGTGA 1 cut(s) 1187
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 286
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 2 cut(s) 185, 1161
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 286, 1145
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 5 cut(s) 106, 305, 1039, 1349, 1366
BceAI ACGGC 2 cut(s) 1364, 1379
BcgI CGANNNNNNTGC 2 cut(s) 1239, 1273
BclI TGATCA 2 cut(s) 799, 1387
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 4 cut(s) 93, 372, 1053, 1254
BfmI CTRYAG 6 cut(s) 196, 435, 591, 612, 618, 1491
BfoI RGCGCY 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 1195
BlpI GCTNAGC 3 cut(s) 54, 72, 1059
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 777
BmiI GGNNCC 4 cut(s) 391, 912, 1050, 1296
BmrI ACTGGG 3 cut(s) 567, 1206, 1307
BmsI GCATC 1 cut(s) 911
BmuI ACTGGG 3 cut(s) 567, 1206, 1307
BpiI GAAGAC 1 cut(s) 329
BplI GAGNNNNNCTC 2 cut(s) 1360, 1392
BpmI CTGGAG 1 cut(s) 1479
Bpu10I CCTNAGC 3 cut(s) 48, 81, 394
Bpu1102I GCTNAGC 3 cut(s) 54, 72, 1059
BpuEI CTTGAG 3 cut(s) 233, 766, 1078
BsaAI YACGTR 1 cut(s) 1403
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 6 cut(s) 15, 37, 497, 957, 1064, 1190
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 1347
Bse118I RCCGGY 1 cut(s) 1276
Bse1I ACTGG 4 cut(s) 419, 573, 1212, 1313
Bse3DI GCAATG 1 cut(s) 1326
BseDI CCNNGG 6 cut(s) 15, 37, 497, 957, 1064, 1190
BseGI GGATG 2 cut(s) 541, 1341
BseLI CCNNNNNNNGG 2 cut(s) 399, 1347
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 6 cut(s) 39, 63, 68, 906, 1443, 1521
BseNI ACTGG 4 cut(s) 419, 573, 1212, 1313
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 1302
BsgI GTGCAG 2 cut(s) 906, 1385
BshFI GGCC 5 cut(s) 5, 779, 956, 1351, 1394
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 2 cut(s) 286, 1145
BsiSI CCGG 1 cut(s) 1277
BslFI GGGAC 1 cut(s) 1096
BslI CCNNNNNNNGG 2 cut(s) 399, 1347
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 1096
BsmI GAATGC 2 cut(s) 490, 1492
BsnI GGCC 5 cut(s) 5, 779, 956, 1351, 1394
Bso31I GGTCTC 1 cut(s) 423
Bsp1286I GDGCHC 4 cut(s) 185, 286, 1145, 1161
Bsp143I GATC 3 cut(s) 799, 948, 1387
Bsp1720I GCTNAGC 3 cut(s) 54, 72, 1059
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 2 cut(s) 599, 1201
BspANI GGCC 5 cut(s) 5, 779, 956, 1351, 1394
BspCNI CTCAG 6 cut(s) 40, 64, 67, 905, 1444, 1522
BspLI GGNNCC 4 cut(s) 391, 912, 1050, 1296
BspMAI CTGCAG 4 cut(s) 595, 616, 622, 1495
BspQI GCTCTTC 1 cut(s) 1536
BspT107I GGYRCC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 1326
BsrFI RCCGGY 1 cut(s) 1276
BsrI ACTGG 4 cut(s) 419, 573, 1212, 1313
BssAI RCCGGY 1 cut(s) 1276
BssECI CCNNGG 6 cut(s) 15, 37, 497, 957, 1064, 1190
BssMI GATC 3 cut(s) 799, 948, 1387
BssT1I CCWWGG 4 cut(s) 497, 957, 1064, 1190
Bst4CI ACNGT 2 cut(s) 915, 1181
Bst6I CTCTTC 2 cut(s) 669, 1536
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 1403
BstC8I GCNNGC 4 cut(s) 369, 646, 1145, 1287
BstDSI CCRYGG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 541, 1341
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 204, 876
BstKTI GATC 3 cut(s) 802, 951, 1390
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 3 cut(s) 799, 948, 1387
BstNSI RCATGY 1 cut(s) 874
BstSFI CTRYAG 6 cut(s) 196, 435, 591, 612, 618, 1491
BstSLI GKGCMC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 5 cut(s) 5, 779, 956, 1351, 1394
BtgI CCRYGG 1 cut(s) 957
BtsCI GGATG 2 cut(s) 541, 1341
BtsIMutI CAGTG 3 cut(s) 412, 1191, 1368
Cac8I GCNNGC 4 cut(s) 369, 646, 1145, 1287
CaiI CAGNNNCTG 2 cut(s) 461, 899
CfoI GCGC 2 cut(s) 204, 876
Cfr10I RCCGGY 1 cut(s) 1276
Cfr13I GGNCC 2 cut(s) 133, 777
Csp6I GTAC 5 cut(s) 390, 515, 865, 962, 1404
CviAII CATG 6 cut(s) 422, 871, 952, 958, 1290, 1538
CviQI GTAC 5 cut(s) 390, 515, 865, 962, 1404
DpnI GATC 3 cut(s) 801, 950, 1389
DpnII GATC 3 cut(s) 799, 948, 1387
DraI TTTAAA 1 cut(s) 1170
EaeI YGGCCR 2 cut(s) 954, 1349
Eam1104I CTCTTC 2 cut(s) 669, 1536
EarI CTCTTC 2 cut(s) 669, 1536
Eco130I CCWWGG 4 cut(s) 497, 957, 1064, 1190
Eco24I GRGCYC 2 cut(s) 185, 1161
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 4 cut(s) 438, 693, 1117, 1356
EcoO109I RGGNCCY 1 cut(s) 777
EcoRI GAATTC 3 cut(s) 112, 661, 1510
EcoT14I CCWWGG 4 cut(s) 497, 957, 1064, 1190
EcoT38I GRGCYC 2 cut(s) 185, 1161
ErhI CCWWGG 4 cut(s) 497, 957, 1064, 1190
FaeI CATG 6 cut(s) 425, 874, 955, 961, 1293, 1541
FaqI GGGAC 1 cut(s) 1096
FatI CATG 6 cut(s) 421, 870, 951, 957, 1289, 1537
FbaI TGATCA 2 cut(s) 799, 1387
FblI GTMKAC 1 cut(s) 814
FokI GGATG 2 cut(s) 548, 1328
FriOI GRGCYC 2 cut(s) 185, 1161
FspBI CTAG 4 cut(s) 93, 372, 1053, 1254
GlaI GCGC 2 cut(s) 203, 875
GsaI CCCAGC 1 cut(s) 1306
GsuI CTGGAG 1 cut(s) 1479
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 5 cut(s) 5, 779, 956, 1351, 1394
HapII CCGG 1 cut(s) 1277
HhaI GCGC 2 cut(s) 204, 876
Hin1II CATG 6 cut(s) 425, 874, 955, 961, 1293, 1541
Hin6I GCGC 2 cut(s) 202, 874
HinP1I GCGC 2 cut(s) 202, 874
HincII GTYRAC 1 cut(s) 815
HindII GTYRAC 1 cut(s) 815
HinfI GANTC 4 cut(s) 408, 816, 1373, 1454
HpaII CCGG 1 cut(s) 1277
HphI GGTGA 1 cut(s) 1187
Hpy166II GTNNAC 2 cut(s) 284, 815
Hpy188I TCNGA 8 cut(s) 19, 118, 992, 1080, 1346, 1414, 1453, 1521
Hpy188III TCNNGA 4 cut(s) 212, 783, 803, 1458
Hpy8I GTNNAC 2 cut(s) 284, 815
Hpy99I CGWCG 1 cut(s) 1350
HpyAV CCTTC 4 cut(s) 214, 226, 758, 1141
HpyCH4III ACNGT 2 cut(s) 915, 1181
HpyCH4IV ACGT 2 cut(s) 546, 1402
HpySE526I ACGT 2 cut(s) 546, 1402
Hsp92II CATG 6 cut(s) 425, 874, 955, 961, 1293, 1541
HspAI GCGC 2 cut(s) 202, 874
KpnI GGTACC 1 cut(s) 393
Ksp22I TGATCA 2 cut(s) 799, 1387
Kzo9I GATC 3 cut(s) 799, 948, 1387
LguI GCTCTTC 1 cut(s) 1536
LmnI GCTCC 2 cut(s) 901, 1069
LweI GCATC 1 cut(s) 911
MaeI CTAG 4 cut(s) 93, 372, 1053, 1254
MaeII ACGT 2 cut(s) 546, 1402
MaeIII GTNAC 3 cut(s) 1175, 1417, 1438
MalI GATC 3 cut(s) 801, 950, 1389
MboI GATC 3 cut(s) 799, 948, 1387
MboII GAAGA 8 cut(s) 229, 334, 565, 596, 686, 818, 1247, 1553
MhlI GDGCHC 4 cut(s) 185, 286, 1145, 1161
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 7 cut(s) 112, 661, 745, 758, 996, 1162, 1510
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 2 cut(s) 810, 1463
MmeI TCCRAC 1 cut(s) 1369
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 956
MseI TTAA 4 cut(s) 177, 443, 480, 1169
MslI CAYNNNNRTG 1 cut(s) 956
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 6 cut(s) 71, 599, 611, 617, 1201, 1334
MspI CCGG 1 cut(s) 1277
Mva1269I GAATGC 2 cut(s) 490, 1492
NcoI CCATGG 1 cut(s) 957
NdeII GATC 3 cut(s) 799, 948, 1387
NlaIII CATG 6 cut(s) 425, 874, 955, 961, 1293, 1541
NlaIV GGNNCC 4 cut(s) 391, 912, 1050, 1296
NmuCI GTSAC 2 cut(s) 1175, 1417
NspI RCATGY 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 1536
PctI GAATGC 2 cut(s) 490, 1492
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 408, 1373
PleI GAGTC 2 cut(s) 810, 1462
PpsI GAGTC 2 cut(s) 810, 1462
Ppu21I YACGTR 1 cut(s) 1403
PshBI ATTAAT 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 1302
PspN4I GGNNCC 4 cut(s) 391, 912, 1050, 1296
PspPI GGNCC 2 cut(s) 133, 777
PstI CTGCAG 4 cut(s) 595, 616, 622, 1495
PstNI CAGNNNCTG 2 cut(s) 461, 899
PvuII CAGCTG 4 cut(s) 71, 611, 617, 1334
RsaI GTAC 5 cut(s) 391, 516, 866, 963, 1405
RsaNI GTAC 5 cut(s) 390, 515, 865, 962, 1404
RseI CAYNNNNRTG 1 cut(s) 956
SalI GTCGAC 1 cut(s) 813
SapI GCTCTTC 1 cut(s) 1536
SaqAI TTAA 4 cut(s) 177, 443, 480, 1169
Sau3AI GATC 3 cut(s) 799, 948, 1387
Sau96I GGNCC 2 cut(s) 133, 777
SchI GAGTC 2 cut(s) 810, 1463
SduI GDGCHC 4 cut(s) 185, 286, 1145, 1161
SfaNI GCATC 1 cut(s) 911
SfcI CTRYAG 6 cut(s) 196, 435, 591, 612, 618, 1491
SinI GGWCC 1 cut(s) 133
SmiI ATTTAAAT 1 cut(s) 1170
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 3 cut(s) 212, 781, 1093
SmoI CTYRAG 3 cut(s) 212, 781, 1093
Sse9I AATT 7 cut(s) 112, 661, 745, 758, 996, 1162, 1510
SsiI CCGC 2 cut(s) 599, 1201
SspMI CTAG 4 cut(s) 93, 372, 1053, 1254
StyI CCWWGG 4 cut(s) 497, 957, 1064, 1190
SwaI ATTTAAAT 1 cut(s) 1170
TaaI ACNGT 2 cut(s) 915, 1181
TaiI ACGT 2 cut(s) 549, 1405
TaqI TCGA 2 cut(s) 814, 1139
TaqII GACCGA 1 cut(s) 1436
TasI AATT 7 cut(s) 112, 661, 745, 758, 996, 1162, 1510
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 2 cut(s) 408, 1373
Tru1I TTAA 4 cut(s) 177, 443, 480, 1169
Tru9I TTAA 4 cut(s) 177, 443, 480, 1169
TscAI CASTG 3 cut(s) 419, 1191, 1368
TseFI GTSAC 2 cut(s) 1175, 1417
Tsp45I GTSAC 2 cut(s) 1175, 1417
TspDTI ATGAA 8 cut(s) 261, 746, 1248, 1254, 1398, 1490, 1503, 1554
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 3 cut(s) 419, 1191, 1368
VneI GTGCAC 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 443
XapI RAATTY 3 cut(s) 112, 661, 1510
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmiI GTMKAC 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 4 cut(s) 93, 372, 1053, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.