Rorug07G0010400

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
855549 .. 857076
1528 bp
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UTR
Exon/CDS
Intron
Rorug07G0010400.1

Sequence Viewer

Length: 570 bp
ATGCAGTTGAAAGTTGTGGGCCCTGTAGCTGTTCTTGGAGGGCTTCTTCAAATCATAACATTTATGTTCTTGTGTGGAATAACTGCTGGGTTATGTGGAGCAAAGTTGTCTGAGGGGATTTTTGTTGGTTCCTTCCTGTCAATGTCATCAACAGCAGTGGTGGTGAAATTTCTAGCAGAAAGGAATAGTAATAGTGCTCTTCATGGTCAAGTTAATTACAATTGGGACGCTAATTTTCCAGTTTTGGGTGGTCATAGCGGTGTTTTCCAAGGGATGGTATCTGTGGGGAAGTTGGTGCTAGTCTTATCATTATATCTTGCCGCCTCATCTGTATTTTGTTGGTCGTTTGTTCCTCGCTTTCTTAAATTGATGATGAAGTTGTCCTCTCAAACAAATGAGCTTTATCAGCTGGCTGTTGTGGCTTTCTGCTTGTTATCTGCTTGGTGCAATGATAAGCTGGGCCTTAGCCTTGAGTTGGGTTCATTTGTGGCTGGAATTATGATATCAACCACTGACTTTGCACAACATACTTTAGATCAGGTACTCTCGGCGTTTTTACTTGTTACCTAA

Protein Analysis

189

Amino Acids

20.23

Weight (kDa)

7.64

Isoelectric Point (pI)

14.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 2 - 70 5.3e-09 Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger PF00999 91 - 183 1.2e-13 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 2 cut(s) 258, 321
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 3 cut(s) 245, 274, 475
AgsI TTSAA 2 cut(s) 10, 50
AluBI AGCT 4 cut(s) 29, 400, 409, 457
AluI AGCT 4 cut(s) 29, 400, 409, 457
Alw21I GWGCWC 1 cut(s) 199
AoxI GGCC 2 cut(s) 19, 460
ApaI GGGCCC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 19, 20, 460
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 199
BccI CCATC 1 cut(s) 268
BfaI CTAG 2 cut(s) 173, 299
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 19, 20, 460
BmiI GGNNCC 2 cut(s) 21, 130
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 274, 475
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 245, 274, 475
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 23
BseYI CCCAGC 2 cut(s) 86, 457
BshFI GGCC 2 cut(s) 21, 462
BsiHKAI GWGCWC 1 cut(s) 199
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 245, 274, 475
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 21, 462
Bsp120I GGGCCC 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 23, 199
Bsp143I GATC 1 cut(s) 535
BspACI CCGC 2 cut(s) 258, 321
BspANI GGCC 2 cut(s) 21, 462
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 21, 130
BspQI GCTCTTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 111, 464
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 538
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 2 cut(s) 406, 419
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 23
BsuRI GGCC 2 cut(s) 21, 462
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 510
Cac8I GCNNGC 1 cut(s) 411
Cfr13I GGNCC 3 cut(s) 19, 20, 460
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 542
CspCI CAANNNNNGTGG 4 cut(s) 138, 173, 499, 534
CviAII CATG 1 cut(s) 203
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 2 cut(s) 111, 464
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 20
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 56, 65, 94, 204, 255, 313, 500, 528
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 173, 299
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 2 cut(s) 90, 461
HaeIII GGCC 2 cut(s) 21, 462
HgaI GACGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 206
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 4, 447, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 406, 419
HpyF3I CTNAG 2 cut(s) 111, 464
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 535
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 36, 72, 149, 252, 395, 443, 477, 524
MaeI CTAG 2 cut(s) 173, 299
MaeIII GTNAC 1 cut(s) 562
MalI GATC 1 cut(s) 537
MboI GATC 1 cut(s) 535
MboII GAAGA 2 cut(s) 38, 191
MfeI CAATTG 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 23, 199
MluCI AATT 6 cut(s) 167, 214, 220, 232, 365, 495
MnlI CCTC 5 cut(s) 32, 106, 334, 363, 394
MseI TTAA 2 cut(s) 213, 363
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 409
MunI CAATTG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 406, 419
NdeII GATC 1 cut(s) 535
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 21, 130
NmeAIII GCCGAG 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 1 cut(s) 322
PspFI CCCAGC 2 cut(s) 86, 457
PspN4I GGNNCC 2 cut(s) 21, 130
PspOMI GGGCCC 1 cut(s) 19
PspPI GGNCC 3 cut(s) 19, 20, 460
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
RseI CAYNNNNRTG 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 213, 363
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 3 cut(s) 19, 20, 460
SduI GDGCHC 2 cut(s) 23, 199
SetI ASST 6 cut(s) 31, 402, 411, 459, 543, 569
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 6 cut(s) 167, 214, 220, 232, 365, 495
SsiI CCGC 2 cut(s) 258, 321
SspMI CTAG 2 cut(s) 173, 299
StyI CCWWGG 1 cut(s) 268
TasI AATT 6 cut(s) 167, 214, 220, 232, 365, 495
TauI GCSGC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 213, 363
Tru9I TTAA 2 cut(s) 213, 363
TscAI CASTG 2 cut(s) 162, 517
TspDTI ATGAA 3 cut(s) 191, 389, 471
TspRI CASTG 2 cut(s) 162, 517
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 167
XspI CTAG 2 cut(s) 173, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.