Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004696

Physical Location & Seq

Genomic Coordinates Reverse (-)

863905 .. 867338

Gene Structure 3434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGATTTTCTTTCCACTGCTTTACCACCCATAGCAATAAGTTTAGCTGTAATACTCTTGGCCGTTATTTTTTGGCCTGCGAAGAACAAGAGGTACCCTCCTGTTGCCGGAACTGTCTTGCACCAAGCCATCAATTTCCCAAGGCTGCATCATTACCACACTGAGCTTGCATGCAAGTACAAAACTTTCAGGATACTTGAATTGTTCAAACATGCTGTCTACACAGTAGATCCTGCAAATGTGCAATACATACTCAAAGAAAATGTTGCAAACTATGGCAAGGGATTGTACCTGCATAGCATTCTGTCCGATCTTATGGGAGATGGAATCTTCGCTGTGGATGGGGACAAATGGCTGCATCAAAGGAAGACATCAGGCTCTCACTTCTCAACTAAAGTACTTAGAGACTTCAGTAGTGAAATCTTCAAAACCAATGGGGTAAAACTTGCTGGCATAATTTATGAAGCTGTAACCTGCGACGAATCAATGGATATCCAAGACTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTTGGCATCGAACTAGGTACCATGTCTGGAACAAATAATGAAGAAAATATTCGGTTTTCCAATGCTTTTGATGATGCAAACCAAGCTACCCTTCATCGTCTTTCTGATATCTTCTGGAAGATCAAGCGGTTCTTGAACATTGGTAGGGAAGCAGTGCTAAGAAAAAATATAGAAGTGGTGGATCACTTTATATACAAATTAATCAACAGAAAGATTGAAACACTCCATAATTCAGAAAATGATAAGCTATATTTAAAGAAAAGAGACTTTATCTCAAGGGTTTTGGAAACTAGTGAGACCGATCCAAAGTACCTGAGAGACATGGTCCTAAATTTTATTGTAGCCGGCAAAGAAACAACTGCTTCTGCTCTTTCATGGTTTTTTTATATGATGTGCAAGCATTTCGATATACAAGAAAAGATTGCACAGGAAGTTAGAGAAGCAACAGCTTTGACTGAGACACTCAGACTCTATCCTACGCTTCCATTGGATGCGAAAGTTTGTTTTTCTGATGATATCTGGCCAGATGGATTTAGTGTCAAAAAAGGAGAAATGGTGGTATACCAATCTTATTCAATGGGCCGGATGGAGTTTTTATGGGGTGATGATGCGGAAGAGTTTCGGCCAGAGAGATGGCTTGACGAAAATGGCAATTTCAAGGAAGAAAGCCCTTTCAAATTCGTAGTCTTTAATGCTGGTCCAAGAATTTGTCTAGGGAAAGAGTATGCTTATATGCAGATGAAGATCGTTTCTGCTATTCTTTTAGGCAGCTACAAATTCAAGATGAGTGACGAGAAAAAACTGGTCAATTACAAAACGATGTTCATCCTCCATATCGATGAAGGTCTTCATGTTAATGCCTCTCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0005778 GO:0005829 GO:0005886 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex14_N

Protein Analysis

472

Amino Acids

54.4

Weight (kDa)

6.93

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	46 - 461	4e-58	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62810
fragaria_vesca	FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290
malus_domestica	MD06G1174100.v1.1 MD14G1180600.v1.1
prunus_persica	Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1
pyrus_communis	pycom06g15540 pycom14g15060
rosa_chinensis	RchiOBHm_Chr7g0193581
rosa_laevigata	RLG00000004261
rosa_multiflora	Rmu_ssc0000035.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261990
rosa_rugosa	Rorug07G0010300 Rorug07G0010400 Rorug07G0010500 Rorug07G0010500
rosa_samantha	Rh7AG137300 Rh7BG137500 Rh7CG140800 Rh7DG138600
rosa_wichuraiana	Rw7G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	300, 482
Acc65I	GGTACC	2 cut(s)	93, 560
AccB1I	GGYRCC	2 cut(s)	93, 560
AccI	GTMKAC	2 cut(s)	219, 1104
AciI	CCGC	2 cut(s)	670, 1154
AclWI	GGATC	3 cut(s)	224, 732, 839
AcoI	YGGCCR	3 cut(s)	60, 1064, 1166
AcsI	RAATTY	4 cut(s)	874, 1220, 1248, 1319
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	6 cut(s)	95, 179, 290, 399, 562, 854
AfiI	CCNNNNNNNGG	1 cut(s)	107
AhlI	ACTAGT	1 cut(s)	833
AjuI	GAANNNNNNNTTGG	4 cut(s)	503, 535, 618, 650
AluBI	AGCT	7 cut(s)	47, 166, 467, 629, 790, 992, 1314
AluI	AGCT	7 cut(s)	47, 166, 467, 629, 790, 992, 1314
Alw26I	GTCTC	5 cut(s)	399, 801, 833, 855, 995
AlwI	GGATC	3 cut(s)	224, 732, 839
AoxI	GGCC	5 cut(s)	60, 74, 1064, 1123, 1166
ApeKI	GCWGC	3 cut(s)	145, 355, 1311
ApoI	RAATTY	4 cut(s)	874, 1220, 1248, 1319
ArsI	GACNNNNNNTTYG	4 cut(s)	201, 233, 1212, 1244
AseI	ATTAAT	1 cut(s)	743
Asp700I	GAANNNNTTC	3 cut(s)	591, 1161, 1389
Asp718I	GGTACC	2 cut(s)	93, 560
AspS9I	GGNCC	3 cut(s)	868, 1123, 1241
AsuHPI	GGTGA	1 cut(s)	1157
AvaII	GGWCC	2 cut(s)	868, 1241
BalI	TGGCCA	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	93, 560
BbsI	GAAGAC	2 cut(s)	374, 1382
BbvI	GCAGC	3 cut(s)	132, 342, 1323
BccI	CCATC	6 cut(s)	137, 317, 335, 1064, 1123, 1170
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	5 cut(s)	399, 801, 833, 855, 995
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	3 cut(s)	557, 834, 1256
BfuAI	ACCTGC	2 cut(s)	300, 482
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	146, 356, 1312
BlsI	GCNGC	3 cut(s)	147, 357, 1313
BmcAI	AGTACT	1 cut(s)	399
Bme18I	GGWCC	2 cut(s)	868, 1241
BmgT120I	GGNCC	3 cut(s)	868, 1123, 1241
BmiI	GGNNCC	2 cut(s)	95, 562
BmsI	GCATC	6 cut(s)	157, 367, 558, 607, 1024, 1141
BpiI	GAAGAC	2 cut(s)	374, 1382
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuEI	CTTGAG	1 cut(s)	802
Bsa29I	ATCGAT	1 cut(s)	1380
BsaBI	GATNNNNATC	2 cut(s)	1286, 1367
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	140, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	1350
Bse8I	GATNNNNATC	2 cut(s)	1286, 1367
BseCI	ATCGAT	1 cut(s)	1380
BseDI	CCNNGG	2 cut(s)	140, 519
BseGI	GGATG	4 cut(s)	346, 1039, 1134, 1368
BseJI	GATNNNNATC	2 cut(s)	1286, 1367
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	4 cut(s)	153, 848, 990, 1021
BseNI	ACTGG	1 cut(s)	1350
BseXI	GCAGC	3 cut(s)	132, 342, 1323
BshFI	GGCC	5 cut(s)	62, 76, 1066, 1125, 1168
BshNI	GGYRCC	2 cut(s)	93, 560
BshVI	ATCGAT	1 cut(s)	1380
BsiSI	CCGG	3 cut(s)	108, 888, 1126
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	5 cut(s)	399, 801, 833, 855, 995
BsmFI	GGGAC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	5 cut(s)	62, 76, 1066, 1125, 1168
Bso31I	GGTCTC	1 cut(s)	833
Bsp143I	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
BspACI	CCGC	2 cut(s)	670, 1154
BspANI	GGCC	5 cut(s)	62, 76, 1066, 1125, 1168
BspCNI	CTCAG	4 cut(s)	154, 849, 991, 1020
BspDI	ATCGAT	1 cut(s)	1380
BspLI	GGNNCC	2 cut(s)	95, 562
BspMI	ACCTGC	2 cut(s)	300, 482
BspPI	GGATC	3 cut(s)	224, 732, 839
BspT107I	GGYRCC	2 cut(s)	93, 560
BspTNI	GGTCTC	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	1350
BssAI	RCCGGY	1 cut(s)	887
BssECI	CCNNGG	2 cut(s)	140, 519
BssMI	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
BssNAI	GTATAC	1 cut(s)	1105
BssT1I	CCWWGG	2 cut(s)	140, 519
Bst1107I	GTATAC	1 cut(s)	1105
Bst4CI	ACNGT	2 cut(s)	115, 226
Bst6I	CTCTTC	1 cut(s)	1152
BstC8I	GCNNGC	6 cut(s)	78, 168, 172, 451, 889, 941
BstDEI	CTNAG	6 cut(s)	162, 401, 701, 857, 999, 1007
BstF5I	GGATG	4 cut(s)	346, 1039, 1134, 1368
BstKTI	GATC	6 cut(s)	232, 313, 666, 727, 847, 1290
BstMAI	GTCTC	5 cut(s)	399, 801, 833, 855, 995
BstMBI	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNSI	RCATGY	2 cut(s)	174, 215
BstV1I	GCAGC	3 cut(s)	132, 342, 1323
BstV2I	GAAGAC	2 cut(s)	374, 1382
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	1176
BstYI	RGATCY	1 cut(s)	229
BstZ17I	GTATAC	1 cut(s)	1105
Bsu15I	ATCGAT	1 cut(s)	1380
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	5 cut(s)	62, 76, 1066, 1125, 1168
BsuTUI	ATCGAT	1 cut(s)	1380
BtsCI	GGATG	4 cut(s)	346, 1039, 1134, 1368
BtsI	GCAGTG	2 cut(s)	15, 702
BtsIMutI	CAGTG	3 cut(s)	15, 159, 702
BveI	ACCTGC	2 cut(s)	300, 482
Cac8I	GCNNGC	6 cut(s)	78, 168, 172, 451, 889, 941
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	3 cut(s)	868, 1123, 1241
ClaI	ATCGAT	1 cut(s)	1380
Csp6I	GTAC	6 cut(s)	94, 178, 289, 398, 561, 853
CviAII	CATG	6 cut(s)	171, 212, 565, 865, 918, 1394
CviQI	GTAC	6 cut(s)	94, 178, 289, 398, 561, 853
DdeI	CTNAG	6 cut(s)	162, 401, 701, 857, 999, 1007
DpnI	GATC	6 cut(s)	231, 312, 665, 726, 846, 1289
DpnII	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
DraI	TTTAAA	1 cut(s)	798
EaeI	YGGCCR	3 cut(s)	60, 1064, 1166
Eam1104I	CTCTTC	1 cut(s)	1152
EarI	CTCTTC	1 cut(s)	1152
Eco130I	CCWWGG	2 cut(s)	140, 519
Eco31I	GGTCTC	1 cut(s)	833
Eco32I	GATATC	3 cut(s)	493, 652, 1060
Eco47I	GGWCC	2 cut(s)	868, 1241
Eco57I	CTGAAG	1 cut(s)	394
EcoRV	GATATC	3 cut(s)	493, 652, 1060
EcoT14I	CCWWGG	2 cut(s)	140, 519
ErhI	CCWWGG	2 cut(s)	140, 519
FaeI	CATG	6 cut(s)	174, 215, 568, 868, 921, 1397
FalI	AAGNNNNNCTT	4 cut(s)	618, 650, 659, 691
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	6 cut(s)	170, 211, 564, 864, 917, 1393
FblI	GTMKAC	2 cut(s)	219, 1104
Fnu4HI	GCNGC	3 cut(s)	146, 356, 1312
FokI	GGATG	4 cut(s)	353, 1046, 1141, 1355
Fsp4HI	GCNGC	3 cut(s)	146, 356, 1312
FspBI	CTAG	3 cut(s)	557, 834, 1256
GluI	GCNGC	3 cut(s)	146, 356, 1312
HaeIII	GGCC	5 cut(s)	62, 76, 1066, 1125, 1168
HapII	CCGG	3 cut(s)	108, 888, 1126
Hin1II	CATG	6 cut(s)	174, 215, 568, 868, 921, 1397
HinfI	GANTC	5 cut(s)	327, 482, 524, 538, 1011
HpaII	CCGG	3 cut(s)	108, 888, 1126
HphI	GGTGA	1 cut(s)	1157
Hpy166II	GTNNAC	2 cut(s)	220, 1105
Hpy188I	TCNGA	5 cut(s)	310, 649, 778, 1010, 1054
Hpy188III	TCNNGA	6 cut(s)	190, 535, 570, 658, 676, 1324
Hpy8I	GTNNAC	2 cut(s)	220, 1105
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	2 cut(s)	644, 1379
HpyCH4III	ACNGT	2 cut(s)	115, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	6 cut(s)	162, 401, 701, 857, 999, 1007
Hsp92II	CATG	6 cut(s)	174, 215, 568, 868, 921, 1397
KpnI	GGTACC	2 cut(s)	97, 564
KroI	GCCGGC	1 cut(s)	887
KroNI	GCCGGC	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
Lsp1109I	GCAGC	3 cut(s)	132, 342, 1323
LweI	GCATC	6 cut(s)	157, 367, 558, 607, 1024, 1141
MaeI	CTAG	3 cut(s)	557, 834, 1256
MaeIII	GTNAC	2 cut(s)	469, 1331
MalI	GATC	6 cut(s)	231, 312, 665, 726, 846, 1289
MboI	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
MflI	RGATCY	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	1066
MluNI	TGGCCA	1 cut(s)	1066
MlyI	GAGTC	1 cut(s)	1005
MnlI	CCTC	4 cut(s)	84, 108, 1382, 1414
Mox20I	TGGCCA	1 cut(s)	1066
MroNI	GCCGGC	1 cut(s)	887
MroXI	GAANNNNTTC	3 cut(s)	591, 1161, 1389
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	4 cut(s)	743, 797, 1233, 1398
MslI	CAYNNNNRTG	2 cut(s)	1380, 1398
Msp20I	TGGCCA	1 cut(s)	1066
MspI	CCGG	3 cut(s)	108, 888, 1126
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	626
NaeI	GCCGGC	1 cut(s)	889
NdeII	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
NgoMIV	GCCGGC	1 cut(s)	887
NlaIII	CATG	6 cut(s)	174, 215, 568, 868, 921, 1397
NlaIV	GGNNCC	2 cut(s)	95, 562
NmuCI	GTSAC	1 cut(s)	1331
NspI	RCATGY	2 cut(s)	174, 215
PaeI	GCATGC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	889
PdmI	GAANNNNTTC	3 cut(s)	591, 1161, 1389
PfeI	GAWTC	4 cut(s)	327, 482, 524, 538
PflFI	GACNNNGTC	1 cut(s)	866
PkrI	GCNGC	3 cut(s)	147, 357, 1313
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PshBI	ATTAAT	1 cut(s)	743
PspN4I	GGNNCC	2 cut(s)	95, 562
PspPI	GGNCC	3 cut(s)	868, 1123, 1241
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	6 cut(s)	95, 179, 290, 399, 562, 854
RsaNI	GTAC	6 cut(s)	94, 178, 289, 398, 561, 853
RseI	CAYNNNNRTG	2 cut(s)	1380, 1398
SaqAI	TTAA	4 cut(s)	743, 797, 1233, 1398
SatI	GCNGC	3 cut(s)	146, 356, 1312
Sau3AI	GATC	6 cut(s)	229, 310, 663, 724, 844, 1287
Sau96I	GGNCC	3 cut(s)	868, 1123, 1241
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	1 cut(s)	1005
SfaNI	GCATC	6 cut(s)	157, 367, 558, 607, 1024, 1141
SinI	GGWCC	2 cut(s)	868, 1241
SmiMI	CAYNNNNRTG	2 cut(s)	1380, 1398
SmlI	CTYRAG	1 cut(s)	817
SmoI	CTYRAG	1 cut(s)	817
SpeI	ACTAGT	1 cut(s)	833
SphI	GCATGC	1 cut(s)	174
SsiI	CCGC	2 cut(s)	670, 1154
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	557, 834, 1256
StyI	CCWWGG	2 cut(s)	140, 519
TaaI	ACNGT	2 cut(s)	115, 226
TaqI	TCGA	3 cut(s)	552, 948, 1380
TaqII	GACCGA	1 cut(s)	857
TatI	WGTACW	2 cut(s)	177, 397
TfiI	GAWTC	4 cut(s)	327, 482, 524, 538
Tru1I	TTAA	4 cut(s)	743, 797, 1233, 1398
Tru9I	TTAA	4 cut(s)	743, 797, 1233, 1398
TscAI	CASTG	3 cut(s)	22, 166, 702
TseFI	GTSAC	1 cut(s)	1331
TseI	GCWGC	3 cut(s)	145, 355, 1311
Tsp45I	GTSAC	1 cut(s)	1331
TspDTI	ATGAA	9 cut(s)	477, 524, 597, 626, 906, 1298, 1357, 1382, 1398
TspRI	CASTG	3 cut(s)	22, 166, 702
Tth111I	GACNNNGTC	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	868, 1241
VspI	ATTAAT	1 cut(s)	743
XapI	RAATTY	4 cut(s)	874, 1220, 1248, 1319
XceI	RCATGY	2 cut(s)	174, 215
XmiI	GTMKAC	2 cut(s)	219, 1104
XmnI	GAANNNNTTC	3 cut(s)	591, 1161, 1389
XspI	CTAG	3 cut(s)	557, 834, 1256
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.