MD06G1174100.v1.1

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
31427398 .. 31432269
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1174100.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGAGGGAGGAACAAGTGCAAAATGCTGTGAAATTCCTTTCGCACCCGAAAGTTAGGGGCTCTCCTGTTGTTTACAGACGGTCTTTTCTCGAGAAGAAGGGTCTCACAAAAGAAGAGATTGATGAAGCGTTTCGGCGTGTGCCTGACCCACCTTCAGGTACGCAGGCAACTACTGGAAATCAAGATGGACAGGTGAAGACATCGTCAAATGTTCAGGCACAAAATACAACTCAAACTTTGCAGCCGTCACCCGCTGCTCCCACTAAAGTCATTTCCCCTGTGGGTGCATTATCTGGCTATAAATTTCGCTGGTTTGATGCCGTTTTTGCCATAGGATTCCTAACACTCTCTGGTTGTGGAGCAGCTGTATTAATTAAGAAATCTCTTATTCCTAGATTGAAGGCTTGGATACGTAAGGTTGTATTGGAAGATGAGAATGACGTTGAAAACAAAGTTGATATGAAACCAAGTTCAGCAGAAGAAGCTGCGGCAGCTGCTAAAACAGCCGCAGCTGCAGCATCAGATGTGGCAAAAGTAATCCAGGAAATGCTGAATTCTAAGACCGAAGAGAGGAAACACTTCGTGGAACTCATGAGTTTGTTAGATGTGCAAGTGCAAGAAATGAAGTCAATGAGCAATTCCATACGGAAATTGGAAGGAGAAACAAAAGCCTCAAGAACCTCTCTTGTTGATCATGAAGACAATCACATCGCTATCACAAATTCAAAGCAACAATATGTGAATGGCAAGGCAGAGTATGACGTGCGCTCAGTACAATCTTCCACTGCTGCTGCATCTATGGAACCATCTGCTGCACCTCACCCAAAGTCTTATATGGATATCATGGCCATGGTACAAAGAGGGGAGAAACCTCCTAATGTCAAAGATATTGATGATTCACCCCCTAACCCTAATCAGCAACTATCAAATCCTCGCTTGGCACCTAGAGCTAAGCCTTGGGAAGTTGGTCAGGCCCAAAACAACTCGAGCCAAGTACTTCAGTCTCAAGTAAGCAGTGAAGGTTTGAATTCCAGCATTCAGGACAATGGGCTCAATTATCTGTCAAACGGTGACAGTACAGTGTCGCGGTGGCAGCAGCAGCAGCGGAAAAATCCCAGAATTACTGAGATAGACAATGAAGTCAATGGAGGGTCTTATGGCATACGAACTAGAGAGCAACCAGTTCAGCCAGTTCAGCGTACATGGGTTCCTCCCCAGCCACCCCCAGTTGCAATGGCAGCAGCAGCTGAAGCCATCCGACGGCCAAAACCACCAGTGCAGAAAGAACAGCTGGGTAACGATCTGCCCTTTTCACATCCATCAGAAGTGACCGATGGCCCATCGCAAGGGACCGATGAGTTGCAGAGGATAACAAAGATAGCTGAATCTGGAGGTGCACCGGAGCAAATCAATGGAAGCTCACCGCTGGGCTCAACAACTGAGATACAAGAAGAGGAAGTGAGCTATTAG

Protein Analysis

490

Amino Acids

53.42

Weight (kDa)

6.18

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 2 - 46 1.8e-13 Pex14 N-terminal domain
PEX14-like_2nd PF23020 101 - 219 1.4e-51 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 273 - 321 3.3e-16 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1139
AccB1I GGYRCC 1 cut(s) 940
AccII CGCG 1 cut(s) 1087
AciI CCGC 6 cut(s) 252, 488, 507, 1087, 1105, 1424
AcoI YGGCCR 2 cut(s) 846, 1262
AcsI RAATTY 5 cut(s) 32, 302, 553, 721, 1027
AcuI CTGAAG 3 cut(s) 138, 983, 1269
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 6 cut(s) 160, 774, 855, 996, 1078, 1201
AfiI CCNNNNNNNGG 4 cut(s) 155, 570, 1260, 1346
AgsI TTSAA 4 cut(s) 400, 446, 726, 1027
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 1 cut(s) 540
Alw21I GWGCWC 1 cut(s) 1399
Alw26I GTCTC 2 cut(s) 107, 1008
Alw44I GTGCAC 1 cut(s) 1395
AlwNI CAGNNNCTG 1 cut(s) 1247
Ama87I CYCGRG 2 cut(s) 89, 985
AoxI GGCC 4 cut(s) 846, 972, 1262, 1336
ApaLI GTGCAC 1 cut(s) 1395
ApoI RAATTY 5 cut(s) 32, 302, 553, 721, 1027
AseI ATTAAT 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 129, 578
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 3 cut(s) 973, 1337, 1350
AsuHPI GGTGA 6 cut(s) 205, 240, 812, 891, 1082, 1413
AvaI CYCGRG 2 cut(s) 89, 985
AvaII GGWCC 1 cut(s) 1350
BaeGI GKGCMC 1 cut(s) 1399
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 1 cut(s) 940
BanII GRGCYC 3 cut(s) 62, 1053, 1433
BbsI GAAGAC 2 cut(s) 203, 705
Bbv12I GWGCWC 1 cut(s) 1399
BccI CCATC 6 cut(s) 179, 814, 1262, 1327, 1328, 1348
BceAI ACGGC 3 cut(s) 229, 305, 1277
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 107, 1008
BfaI CTAG 3 cut(s) 393, 945, 1170
BfmI CTRYAG 1 cut(s) 513
BfuI GTATCC 1 cut(s) 402
BlpI GCTNAGC 1 cut(s) 951
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 1350
BmeT110I CYCGRG 2 cut(s) 89, 985
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 3 cut(s) 973, 1337, 1350
BmiI GGNNCC 4 cut(s) 804, 942, 1209, 1351
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 1220
BmsI GCATC 3 cut(s) 307, 527, 803
BmuI ACTGGG 1 cut(s) 1220
BpiI GAAGAC 2 cut(s) 203, 705
BpmI CTGGAG 1 cut(s) 1410
Bpu1102I GCTNAGC 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 658, 990
BsaAI YACGTR 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 849, 956
BsaWI WCCGGW 1 cut(s) 1399
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 570, 1260, 1346
Bse1I ACTGG 5 cut(s) 178, 1181, 1190, 1226, 1274
Bse3DI GCAATG 1 cut(s) 1239
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 849, 956
BseGI GGATG 2 cut(s) 1254, 1315
BseLI CCNNNNNNNGG 4 cut(s) 155, 570, 1260, 1346
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 3 cut(s) 783, 1116, 1431
BseNI ACTGG 5 cut(s) 178, 1181, 1190, 1226, 1274
BseSI GKGCMC 1 cut(s) 1399
BseYI CCCAGC 3 cut(s) 1215, 1291, 1426
BsgI GTGCAG 2 cut(s) 798, 1298
Bsh1236I CGCG 1 cut(s) 1087
BshFI GGCC 4 cut(s) 848, 974, 1264, 1338
BshNI GGYRCC 1 cut(s) 940
BsiHKAI GWGCWC 1 cut(s) 1399
BsiHKCI CYCGRG 2 cut(s) 89, 985
BsiSI CCGG 1 cut(s) 1400
BslFI GGGAC 1 cut(s) 1363
BslI CCNNNNNNNGG 4 cut(s) 155, 570, 1260, 1346
BsmAI GTCTC 2 cut(s) 107, 1008
BsmFI GGGAC 1 cut(s) 1363
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 4 cut(s) 848, 974, 1264, 1338
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 2 cut(s) 89, 985
Bsp1286I GDGCHC 4 cut(s) 62, 1053, 1399, 1433
Bsp143I GATC 2 cut(s) 691, 1300
Bsp1720I GCTNAGC 1 cut(s) 951
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 6 cut(s) 252, 488, 507, 1087, 1105, 1424
BspANI GGCC 4 cut(s) 848, 974, 1264, 1338
BspCNI CTCAG 3 cut(s) 782, 1117, 1432
BspFNI CGCG 1 cut(s) 1087
BspHI TCATGA 2 cut(s) 591, 694
BspLI GGNNCC 4 cut(s) 804, 942, 1209, 1351
BspMAI CTGCAG 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 1239
BsrI ACTGG 5 cut(s) 178, 1181, 1190, 1226, 1274
BssECI CCNNGG 2 cut(s) 849, 956
BssMI GATC 2 cut(s) 691, 1300
BssT1I CCWWGG 2 cut(s) 849, 956
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 81, 1070, 1076, 1081
Bst6I CTCTTC 3 cut(s) 108, 561, 1446
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 5 cut(s) 558, 769, 951, 1125, 1440
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 2 cut(s) 1254, 1315
BstFNI CGCG 1 cut(s) 1087
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 2 cut(s) 694, 1303
BstMAI GTCTC 2 cut(s) 107, 1008
BstMBI GATC 2 cut(s) 691, 1300
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 1399
BstSNI TACGTA 1 cut(s) 413
BstUI CGCG 1 cut(s) 1087
BstV2I GAAGAC 2 cut(s) 203, 705
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 4 cut(s) 848, 974, 1264, 1338
BtgI CCRYGG 1 cut(s) 849
BtgZI GCGATG 2 cut(s) 694, 1326
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 2 cut(s) 1254, 1315
BtsI GCAGTG 2 cut(s) 783, 1021
BtsIMutI CAGTG 4 cut(s) 783, 1021, 1086, 1281
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 1247
CciI TCATGA 2 cut(s) 591, 694
CfoI GCGC 1 cut(s) 768
Cfr13I GGNCC 3 cut(s) 973, 1337, 1350
Csp6I GTAC 6 cut(s) 159, 773, 854, 995, 1077, 1200
CviAII CATG 5 cut(s) 592, 695, 844, 850, 1203
CviQI GTAC 6 cut(s) 159, 773, 854, 995, 1077, 1200
DdeI CTNAG 5 cut(s) 558, 769, 951, 1125, 1440
DpnI GATC 2 cut(s) 693, 1302
DpnII GATC 2 cut(s) 691, 1300
DraIII CACNNNGTG 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 1139
DseDI GACNNNNNNGTC 1 cut(s) 1139
EaeI YGGCCR 2 cut(s) 846, 1262
Eam1104I CTCTTC 3 cut(s) 108, 561, 1446
EarI CTCTTC 3 cut(s) 108, 561, 1446
Eco105I TACGTA 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 849, 956
Eco24I GRGCYC 3 cut(s) 62, 1053, 1433
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 1350
Eco57I CTGAAG 3 cut(s) 138, 983, 1269
Eco88I CYCGRG 2 cut(s) 89, 985
EcoRI GAATTC 2 cut(s) 553, 1027
EcoRII CCWGG 1 cut(s) 540
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 2 cut(s) 849, 956
EcoT38I GRGCYC 3 cut(s) 62, 1053, 1433
ErhI CCWWGG 2 cut(s) 849, 956
FaeI CATG 5 cut(s) 595, 698, 847, 853, 1206
FaqI GGGAC 1 cut(s) 1363
FatI CATG 5 cut(s) 591, 694, 843, 849, 1202
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 691
FokI GGATG 2 cut(s) 1241, 1302
FriOI GRGCYC 3 cut(s) 62, 1053, 1433
FspBI CTAG 3 cut(s) 393, 945, 1170
GlaI GCGC 1 cut(s) 767
GsaI CCCAGC 3 cut(s) 1219, 1295, 1430
GsuI CTGGAG 1 cut(s) 1410
HaeIII GGCC 4 cut(s) 848, 974, 1264, 1338
HapII CCGG 1 cut(s) 1400
HhaI GCGC 1 cut(s) 768
Hin1II CATG 5 cut(s) 595, 698, 847, 853, 1206
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HinfI GANTC 3 cut(s) 336, 896, 1385
HpaII CCGG 1 cut(s) 1400
HphI GGTGA 6 cut(s) 205, 240, 812, 891, 1082, 1413
Hpy166II GTNNAC 2 cut(s) 73, 1397
Hpy188I TCNGA 3 cut(s) 523, 1259, 1324
Hpy188III TCNNGA 8 cut(s) 89, 91, 182, 592, 675, 695, 1040, 1389
Hpy8I GTNNAC 2 cut(s) 73, 1397
Hpy99I CGWCG 1 cut(s) 1263
HpyAV CCTTC 5 cut(s) 91, 162, 394, 650, 1013
HpyCH4III ACNGT 4 cut(s) 81, 1070, 1076, 1081
HpyCH4IV ACGT 3 cut(s) 412, 441, 762
HpyF3I CTNAG 5 cut(s) 558, 769, 951, 1125, 1440
HpySE526I ACGT 3 cut(s) 412, 441, 762
Hsp92II CATG 5 cut(s) 595, 698, 847, 853, 1206
HspAI GCGC 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 2 cut(s) 691, 1300
LmnI GCTCC 3 cut(s) 262, 359, 1402
LweI GCATC 3 cut(s) 307, 527, 803
MaeI CTAG 3 cut(s) 393, 945, 1170
MaeII ACGT 3 cut(s) 412, 441, 762
MaeIII GTNAC 4 cut(s) 246, 1070, 1295, 1327
MalI GATC 2 cut(s) 693, 1302
MboI GATC 2 cut(s) 691, 1300
MboII GAAGA 9 cut(s) 106, 125, 208, 440, 491, 578, 710, 771, 1463
MhlI GDGCHC 4 cut(s) 62, 1053, 1399, 1433
MlsI TGGCCA 1 cut(s) 848
MluNI TGGCCA 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 1282
Mox20I TGGCCA 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 129, 578
MscI TGGCCA 1 cut(s) 848
MseI TTAA 2 cut(s) 371, 375
MslI CAYNNNNRTG 1 cut(s) 848
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 8 cut(s) 254, 365, 494, 512, 1105, 1247, 1291, 1426
MspI CCGG 1 cut(s) 1400
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 1087
NcoI CCATGG 1 cut(s) 849
NdeII GATC 2 cut(s) 691, 1300
NlaIII CATG 5 cut(s) 595, 698, 847, 853, 1206
NlaIV GGNNCC 4 cut(s) 804, 942, 1209, 1351
NmuCI GTSAC 3 cut(s) 246, 1070, 1327
PacI TTAATTAA 1 cut(s) 375
PaeR7I CTCGAG 2 cut(s) 89, 985
PagI TCATGA 2 cut(s) 591, 694
PctI GAATGC 1 cut(s) 1035
PdmI GAANNNNTTC 2 cut(s) 129, 578
PfeI GAWTC 3 cut(s) 336, 896, 1385
PflFI GACNNNGTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 540
Ppu21I YACGTR 1 cut(s) 413
PshBI ATTAAT 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 540
PspFI CCCAGC 3 cut(s) 1215, 1291, 1426
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 4 cut(s) 804, 942, 1209, 1351
PspPI GGNCC 3 cut(s) 973, 1337, 1350
PspXI VCTCGAGB 1 cut(s) 985
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 1247
PsyI GACNNNGTC 1 cut(s) 202
PvuII CAGCTG 5 cut(s) 365, 494, 512, 1247, 1291
RsaI GTAC 6 cut(s) 160, 774, 855, 996, 1078, 1201
RsaNI GTAC 6 cut(s) 159, 773, 854, 995, 1077, 1200
RseI CAYNNNNRTG 1 cut(s) 848
SaqAI TTAA 2 cut(s) 371, 375
Sau3AI GATC 2 cut(s) 691, 1300
Sau96I GGNCC 3 cut(s) 973, 1337, 1350
ScaI AGTACT 1 cut(s) 996
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 4 cut(s) 62, 1053, 1399, 1433
SfaNI GCATC 3 cut(s) 307, 527, 803
SfcI CTRYAG 1 cut(s) 513
Sfr274I CTCGAG 2 cut(s) 89, 985
SinI GGWCC 1 cut(s) 1350
SlaI CTCGAG 2 cut(s) 89, 985
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 4 cut(s) 89, 673, 985, 1005
SmoI CTYRAG 4 cut(s) 89, 673, 985, 1005
SnaBI TACGTA 1 cut(s) 413
SsiI CCGC 6 cut(s) 252, 488, 507, 1087, 1105, 1424
SspMI CTAG 3 cut(s) 393, 945, 1170
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 849, 956
TaaI ACNGT 4 cut(s) 81, 1070, 1076, 1081
TaiI ACGT 3 cut(s) 415, 444, 765
TaqI TCGA 2 cut(s) 90, 986
TaqII GACCGA 3 cut(s) 578, 1346, 1367
TatI WGTACW 3 cut(s) 772, 994, 1076
TauI GCSGC 2 cut(s) 491, 509
TfiI GAWTC 3 cut(s) 336, 896, 1385
Tru1I TTAA 2 cut(s) 371, 375
Tru9I TTAA 2 cut(s) 371, 375
TscAI CASTG 4 cut(s) 790, 1021, 1086, 1281
TseFI GTSAC 3 cut(s) 246, 1070, 1327
Tsp45I GTSAC 3 cut(s) 246, 1070, 1327
TspDTI ATGAA 5 cut(s) 138, 476, 638, 711, 1152
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 4 cut(s) 790, 1021, 1086, 1281
Tth111I GACNNNGTC 1 cut(s) 202
VneI GTGCAC 1 cut(s) 1395
VpaK11BI GGWCC 1 cut(s) 1350
VspI ATTAAT 1 cut(s) 371
XapI RAATTY 5 cut(s) 32, 302, 553, 721, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XhoI CTCGAG 2 cut(s) 89, 985
XmnI GAANNNNTTC 2 cut(s) 129, 578
XspI CTAG 3 cut(s) 393, 945, 1170
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.