Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004696

Physical Location & Seq

Genomic Coordinates Reverse (-)

17727920 .. 17731413

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAGGGAGGAACAAGTGCAAAATGCTGTTAAATTCCTTTCGCACCCGAAAGTTAGGGGCTCTCCTGTTGTTTACAGACGGTCTTTTCTCGAGAAGAAGGGGCTCACAAAAGAAGAGATTGACGAAGCGTTTCGGCGTGTGCCTGACCCACCTTCAGGAAATCAAGCAGATGGACAGGTGAAGACATCGTCAAATGTTCAGGCACAAAATACAACTCAAACTTTGCAGCCTTCCGCCGCTGCTCCCACTAAAGCAATTTCCCCTGTGGGTACATTAACTGGGTATAGATTTCGCTGGTCTCATGCCATTGTTGCTGTAGGAGTACTGACACTTTCTGGTTGTGGAGCAGCTGTACTAATTAAGAAATCTCTTATTCCTAGATTGAAGGCTTGGATACGCAAGGTTGTATTGGAAGATGAGAATGATGTTAAGAATAAAGTTGACTCGAAACCAAGTTTGGCAGAAGAAGCTGCGGCGGCTGCTAAAACAGCCGCAGCCGCAGCATCAGATGTGGCAAAAGTAAGCCAGGAAATGCTGAATTCTAAGACTGAAGAGAGGAAATACTTCGTGGAACTCATGAGTTTGTTAGATGTGCAAGTGCAAGAAATGAAGTCAATGAGTAATTCCATACGGAAATTGGAAGGAGAAACAAAAGCCTCGAGAACCTCTCTTGTTGATCATGAAGACAATCGCATCGCTATCACAAATTCAAAGCAACAGTATGTGAATGGCAAGGCAGAGTATGACGTGCGCTCAGTGCAATCTTCCTCAGCTGCTGCATCTATGGAACCAGCACCTCATCCAAAGTCTTACATGGATATCATGGCCACGGTACAAAGAGGGGAGAAACCTCCCAATGTCAAAGACATTGATGATTTTCCCCTGAACCCTAATCAGCAACTATCAAATCCTCGCTTGGGGGCTAAGCCTTGGGAAGTTGGTCAGGCCCAAAACAACCCGAGCCAAGTGCTTCAATCTCAAGTAAGCAGTAGTTTGAATTCCAGCATTCAGGACAATGGGCTCAATTATCAGTCAAACGGTGACAGTACAGTGTCATGGTGGCAGCAGCAGCAGAAAAATTCCAGAATCACCGAGATAGAAAGTGAAGTCAATGGAGGGTCGTATGGTGTACGAACTAGTGAGCAACCAGTTCAGCGTACATGGGTTCCTCCCCAGCCACCCCCTGTTGCAATGGCAGTAGCAGCTGAAGCTATCCGACGGCCAAAACCATCAGTGCAGAAAGAACAGCTGGGTAACGATCTGCCCATTGCACGCCCATCAGAAGCGACCAATGGCCCATCAGAAGCGGCGGATGAGTTGCAGAGGGTAACCAAAATAGCTGAATCTGGAGGTGAATCGAAGCAAATCAATGGAAGTTCACCGCTGAACTCGACTACTGAGATACAAGAAGAGGAAGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0005778 GO:0005829 GO:0005886 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex14_N

Protein Analysis

475

Amino Acids

51.66

Weight (kDa)

6.96

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62810
fragaria_vesca	FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290
malus_domestica	MD06G1174100.v1.1 MD14G1180600.v1.1
prunus_persica	Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1
pyrus_communis	pycom06g15540 pycom14g15060
rosa_chinensis	RchiOBHm_Chr7g0193581
rosa_laevigata	RLG00000004261
rosa_multiflora	Rmu_ssc0000035.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261990
rosa_rugosa	Rorug07G0010300 Rorug07G0010400 Rorug07G0010500 Rorug07G0010500
rosa_samantha	Rh7AG137300 Rh7BG137500 Rh7CG140800 Rh7DG138600
rosa_wichuraiana	Rw7G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	234, 237, 473, 476, 492, 498, 1307, 1310, 1382
AcoI	YGGCCR	2 cut(s)	825, 1220
AcsI	RAATTY	5 cut(s)	32, 538, 706, 997, 1078
AcuI	CTGAAG	3 cut(s)	138, 570, 1227
AfaI	GTAC	7 cut(s)	271, 324, 354, 834, 1048, 1131, 1159
AfiI	CCNNNNNNNGG	2 cut(s)	155, 917
AgsI	TTSAA	4 cut(s)	385, 711, 974, 997
AhlI	ACTAGT	1 cut(s)	1136
AjiI	CACGTC	1 cut(s)	748
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	8 cut(s)	350, 470, 773, 1205, 1211, 1249, 1340, 1422
AluI	AGCT	8 cut(s)	350, 470, 773, 1205, 1211, 1249, 1340, 1422
Alw26I	GTCTC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	3 cut(s)	89, 658, 958
AoxI	GGCC	4 cut(s)	825, 945, 1220, 1294
ApoI	RAATTY	5 cut(s)	32, 538, 706, 997, 1078
Asp700I	GAANNNNTTC	2 cut(s)	129, 563
AspLEI	GCGC	1 cut(s)	753
AspS9I	GGNCC	2 cut(s)	946, 1295
AsuHPI	GGTGA	5 cut(s)	190, 1052, 1081, 1364, 1371
AvaI	CYCGRG	3 cut(s)	89, 658, 958
BalI	TGGCCA	1 cut(s)	827
BanII	GRGCYC	3 cut(s)	62, 105, 1023
BbsI	GAAGAC	2 cut(s)	188, 690
BbvCI	CCTCAGC	1 cut(s)	769
BccI	CCATC	4 cut(s)	164, 1237, 1285, 1306
BceAI	ACGGC	1 cut(s)	1235
BcgI	CGANNNNNNTGC	2 cut(s)	949, 983
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	1136
BfaI	CTAG	3 cut(s)	378, 1137, 1423
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	387
BlpI	GCTNAGC	1 cut(s)	924
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	527
BmeT110I	CYCGRG	3 cut(s)	89, 658, 958
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	946, 1295
BmiI	GGNNCC	2 cut(s)	789, 1167
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	512, 702, 788
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	188, 690
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
BpmI	CTGGAG	1 cut(s)	1368
Bpu10I	CCTNAGC	1 cut(s)	769
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	963
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	828, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 917
Bse1I	ACTGG	2 cut(s)	283, 1148
Bse3DI	GCAATG	2 cut(s)	1197, 1266
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	828, 929
BseGI	GGATG	2 cut(s)	799, 1318
BseLI	CCNNNNNNNGG	2 cut(s)	155, 917
BseMI	GCAATG	2 cut(s)	1197, 1266
BseMII	CTCAG	3 cut(s)	768, 783, 1389
BseNI	ACTGG	2 cut(s)	283, 1148
BseYI	CCCAGC	2 cut(s)	1173, 1249
BsgI	GTGCAG	1 cut(s)	1256
BshFI	GGCC	4 cut(s)	827, 947, 1222, 1296
BsiHKCI	CYCGRG	3 cut(s)	89, 658, 958
BslI	CCNNNNNNNGG	2 cut(s)	155, 917
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	4 cut(s)	827, 947, 1222, 1296
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	3 cut(s)	89, 658, 958
Bsp1286I	GDGCHC	3 cut(s)	62, 105, 1023
Bsp143I	GATC	2 cut(s)	676, 1258
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	9 cut(s)	234, 237, 473, 476, 492, 498, 1307, 1310, 1382
BspANI	GGCC	4 cut(s)	827, 947, 1222, 1296
BspCNI	CTCAG	3 cut(s)	767, 782, 1390
BspHI	TCATGA	2 cut(s)	576, 679
BspLI	GGNNCC	2 cut(s)	789, 1167
BspTNI	GGTCTC	1 cut(s)	303
BsrDI	GCAATG	2 cut(s)	1197, 1266
BsrI	ACTGG	2 cut(s)	283, 1148
BssECI	CCNNGG	2 cut(s)	828, 929
BssMI	GATC	2 cut(s)	676, 1258
BssT1I	CCWWGG	1 cut(s)	929
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	6 cut(s)	81, 720, 832, 1040, 1046, 1051
Bst6I	CTCTTC	3 cut(s)	108, 546, 1404
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	5 cut(s)	543, 754, 769, 924, 1398
BstDSI	CCRYGG	1 cut(s)	828
BstEII	GGTNACC	1 cut(s)	1327
BstF5I	GGATG	2 cut(s)	799, 1318
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	2 cut(s)	679, 1261
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	676, 1258
BstNI	CCWGG	1 cut(s)	527
BstPI	GGTNACC	1 cut(s)	1327
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	315
BstV2I	GAAGAC	2 cut(s)	188, 690
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	827, 947, 1222, 1296
BtgI	CCRYGG	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	679
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	799, 1318
BtsIMutI	CAGTG	3 cut(s)	762, 1056, 1239
Cac8I	GCNNGC	1 cut(s)	1273
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	2 cut(s)	576, 679
CfoI	GCGC	1 cut(s)	753
Cfr13I	GGNCC	2 cut(s)	946, 1295
Csp6I	GTAC	7 cut(s)	270, 323, 353, 833, 1047, 1130, 1158
CviAII	CATG	7 cut(s)	302, 577, 680, 814, 823, 1056, 1161
CviQI	GTAC	7 cut(s)	270, 323, 353, 833, 1047, 1130, 1158
DdeI	CTNAG	5 cut(s)	543, 754, 769, 924, 1398
DpnI	GATC	2 cut(s)	678, 1260
DpnII	GATC	2 cut(s)	676, 1258
EaeI	YGGCCR	2 cut(s)	825, 1220
Eam1104I	CTCTTC	3 cut(s)	108, 546, 1404
EarI	CTCTTC	3 cut(s)	108, 546, 1404
EciI	GGCGGA	2 cut(s)	223, 1325
Eco130I	CCWWGG	1 cut(s)	929
Eco24I	GRGCYC	3 cut(s)	62, 105, 1023
Eco31I	GGTCTC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	820
Eco57I	CTGAAG	3 cut(s)	138, 570, 1227
Eco88I	CYCGRG	3 cut(s)	89, 658, 958
Eco91I	GGTNACC	1 cut(s)	1327
EcoO65I	GGTNACC	1 cut(s)	1327
EcoRI	GAATTC	2 cut(s)	538, 997
EcoRII	CCWGG	1 cut(s)	525
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	929
EcoT38I	GRGCYC	3 cut(s)	62, 105, 1023
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	7 cut(s)	305, 580, 683, 817, 826, 1059, 1164
FatI	CATG	7 cut(s)	301, 576, 679, 813, 822, 1055, 1160
FbaI	TGATCA	1 cut(s)	676
FokI	GGATG	2 cut(s)	786, 1325
FriOI	GRGCYC	3 cut(s)	62, 105, 1023
FspBI	CTAG	3 cut(s)	378, 1137, 1423
GlaI	GCGC	1 cut(s)	752
GsaI	CCCAGC	2 cut(s)	1177, 1253
GsuI	CTGGAG	1 cut(s)	1368
HaeIII	GGCC	4 cut(s)	827, 947, 1222, 1296
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	7 cut(s)	305, 580, 683, 817, 826, 1059, 1164
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	443, 1086, 1343, 1355
HphI	GGTGA	5 cut(s)	190, 1052, 1081, 1364, 1371
Hpy166II	GTNNAC	4 cut(s)	73, 442, 1130, 1379
Hpy188I	TCNGA	4 cut(s)	508, 1217, 1282, 1303
Hpy188III	TCNNGA	9 cut(s)	89, 91, 156, 577, 660, 680, 1010, 1083, 1347
Hpy8I	GTNNAC	4 cut(s)	73, 442, 1130, 1379
Hpy99I	CGWCG	1 cut(s)	1221
HpyAV	CCTTC	5 cut(s)	91, 162, 240, 379, 635
HpyCH4III	ACNGT	6 cut(s)	81, 720, 832, 1040, 1046, 1051
HpyCH4IV	ACGT	1 cut(s)	747
HpyF3I	CTNAG	5 cut(s)	543, 754, 769, 924, 1398
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	305, 580, 683, 817, 826, 1059, 1164
HspAI	GCGC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	2 cut(s)	676, 1258
LmnI	GCTCC	2 cut(s)	247, 344
LweI	GCATC	3 cut(s)	512, 702, 788
MaeI	CTAG	3 cut(s)	378, 1137, 1423
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	1040, 1253, 1327
MalI	GATC	2 cut(s)	678, 1260
MboI	GATC	2 cut(s)	676, 1258
MboII	GAAGA	9 cut(s)	106, 125, 193, 425, 476, 563, 695, 756, 1421
MhlI	GDGCHC	3 cut(s)	62, 105, 1023
MlsI	TGGCCA	1 cut(s)	827
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	1240
Mox20I	TGGCCA	1 cut(s)	827
MroXI	GAANNNNTTC	2 cut(s)	129, 563
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	4 cut(s)	30, 275, 360, 429
Msp20I	TGGCCA	1 cut(s)	827
MspA1I	CMGCKG	6 cut(s)	239, 350, 773, 1205, 1249, 1384
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	1 cut(s)	527
NdeII	GATC	2 cut(s)	676, 1258
NlaIII	CATG	7 cut(s)	305, 580, 683, 817, 826, 1059, 1164
NlaIV	GGNNCC	2 cut(s)	789, 1167
NmuCI	GTSAC	1 cut(s)	1040
PaeR7I	CTCGAG	2 cut(s)	89, 658
PagI	TCATGA	2 cut(s)	576, 679
PctI	GAATGC	1 cut(s)	1005
PdmI	GAANNNNTTC	2 cut(s)	129, 563
PfeI	GAWTC	3 cut(s)	1086, 1343, 1355
PflFI	GACNNNGTC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	525
PspEI	GGTNACC	1 cut(s)	1327
PspFI	CCCAGC	2 cut(s)	1173, 1249
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	789, 1167
PspPI	GGNCC	2 cut(s)	946, 1295
PstNI	CAGNNNCTG	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	187
PvuII	CAGCTG	4 cut(s)	350, 773, 1205, 1249
RsaI	GTAC	7 cut(s)	271, 324, 354, 834, 1048, 1131, 1159
RsaNI	GTAC	7 cut(s)	270, 323, 353, 833, 1047, 1130, 1158
SaqAI	TTAA	4 cut(s)	30, 275, 360, 429
Sau3AI	GATC	2 cut(s)	676, 1258
Sau96I	GGNCC	2 cut(s)	946, 1295
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	3 cut(s)	62, 105, 1023
SfaNI	GCATC	3 cut(s)	512, 702, 788
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	2 cut(s)	89, 658
SlaI	CTCGAG	2 cut(s)	89, 658
SmlI	CTYRAG	3 cut(s)	89, 658, 978
SmoI	CTYRAG	3 cut(s)	89, 658, 978
SpeI	ACTAGT	1 cut(s)	1136
SsiI	CCGC	9 cut(s)	234, 237, 473, 476, 492, 498, 1307, 1310, 1382
SspMI	CTAG	3 cut(s)	378, 1137, 1423
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	6 cut(s)	81, 720, 832, 1040, 1046, 1051
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	5 cut(s)	90, 446, 659, 1358, 1391
TatI	WGTACW	3 cut(s)	322, 352, 1046
TauI	GCSGC	6 cut(s)	239, 476, 479, 494, 500, 1310
TfiI	GAWTC	3 cut(s)	1086, 1343, 1355
Tru1I	TTAA	4 cut(s)	30, 275, 360, 429
Tru9I	TTAA	4 cut(s)	30, 275, 360, 429
TscAI	CASTG	3 cut(s)	762, 1056, 1239
TseFI	GTSAC	1 cut(s)	1040
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	2 cut(s)	623, 696
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	3 cut(s)	762, 1056, 1239
Tth111I	GACNNNGTC	1 cut(s)	187
XapI	RAATTY	5 cut(s)	32, 538, 706, 997, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XhoI	CTCGAG	2 cut(s)	89, 658
XmnI	GAANNNNTTC	2 cut(s)	129, 563
XspI	CTAG	3 cut(s)	378, 1137, 1423
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.