Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004696

Physical Location & Seq

Genomic Coordinates Reverse (-)

851714 .. 852481

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCCAACTCTATATTGGCCCAGGTCTTTTATAGTATGGTTAATGTATTGGATGATGCGTTGGGCTGGTTGGTGCGGTGTGCTCAGAACCTTTCGCTAGCTCATTTTGGGGAGCTTCTGTTTGCTCTCTGGGGGGTCTGGATGGAGAGGAATGATAGAGTTTGGAATAATAAGCAGCGTGAGGCTGCTGATGTGTGTTTAGGACTTGCTTCGAGGTTACAGGAATTTAGGTTCCATACTGTGAAGCAAGTTGTTCCTAAGAGTAGGAGGAAGGCGGTTTGGAGTGCTCCACCGACTGGCATTGTGAAAATAAATGTGGATGGATCATTTAATCATTTGACTCGTCAAGGTGGTGTAGGTTTTGTGATCCGGGATGATCAAGGAGTAATGCTAGCAGGAGGAGCCTGGCCAGTGCGGGGTTTATATTCGCCTGAGCATGCGGAGATCTTAGCATGTAAATATGCTTTGAAGTTTGCTTTGGAACAAGATTTTGGTCCTTTTGTTTTGGAAACGGATGCAATGGAAGTGCAAAGGCAACTGTCGATGAATGGTGAAGCCAACACTTCGGTGCTGGGCCGTATTTTTGATGATGTGGTTTTGCTTTTGGAGTCCCAGTCTACACTGGGAGTGAAACACATAGGGAGAAGTGGAAACATGGTAGCCCATCAGATGGCCATGTATGCATGTTCCCTTAGACAAGAACAATTTTTCTTTTCTGCACCTTCTTTTCTGTTGGCTGCAATTGCAGCAGATCATTGTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0005778 GO:0005829 GO:0005886 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex14_N

Protein Analysis

255

Amino Acids

28.35

Weight (kDa)

6.65

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	105 - 227	5.9e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62810
fragaria_vesca	FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290 FvH4_5g05290
malus_domestica	MD06G1174100.v1.1 MD14G1180600.v1.1
prunus_persica	Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1 Prupe.5G174100_v2.0.a1
pyrus_communis	pycom06g15540 pycom14g15060
rosa_chinensis	RchiOBHm_Chr7g0193581
rosa_laevigata	RLG00000004261
rosa_multiflora	Rmu_ssc0000035.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261990
rosa_rugosa	Rorug07G0010300 Rorug07G0010400 Rorug07G0010500 Rorug07G0010500
rosa_samantha	Rh7AG137300 Rh7BG137500 Rh7CG140800 Rh7DG138600
rosa_wichuraiana	Rw7G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	296, 670
AccI	GTMKAC	1 cut(s)	617
AciI	CCGC	4 cut(s)	76, 275, 415, 440
AclWI	GGATC	2 cut(s)	331, 361
AcoI	YGGCCR	2 cut(s)	407, 672
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	3 cut(s)	296, 416, 670
AgsI	TTSAA	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	21, 404
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 474, 493, 506
AleI	CACNNNNGTG	1 cut(s)	566
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	101, 115
AluI	AGCT	2 cut(s)	101, 115
Alw21I	GWGCWC	2 cut(s)	85, 289
AlwI	GGATC	2 cut(s)	331, 361
AoxI	GGCC	4 cut(s)	18, 407, 574, 672
ApeKI	GCWGC	4 cut(s)	175, 185, 737, 746
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	19, 494, 574
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	563
AsuNHI	GCTAGC	2 cut(s)	97, 391
AvaII	GGWCC	1 cut(s)	494
BalI	TGGCCA	2 cut(s)	409, 674
Bbv12I	GWGCWC	2 cut(s)	85, 289
BbvI	GCAGC	4 cut(s)	172, 187, 724, 758
BccI	CCATC	4 cut(s)	136, 314, 664, 672
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	2 cut(s)	23, 406
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	371
BfaI	CTAG	2 cut(s)	98, 392
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	4 cut(s)	176, 186, 738, 747
BlsI	GCNGC	4 cut(s)	177, 187, 739, 748
Bme1390I	CCNGG	3 cut(s)	23, 371, 406
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	19, 494, 574
BmiI	GGNNCC	2 cut(s)	233, 403
BmrFI	CCNGG	3 cut(s)	23, 371, 406
BmrI	ACTGGG	2 cut(s)	607, 632
BmsI	GCATC	2 cut(s)	46, 505
BmtI	GCTAGC	2 cut(s)	101, 395
BmuI	ACTGGG	2 cut(s)	607, 632
Bpu10I	CCTNAGC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 599, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 416, 670
Bse1I	ACTGG	4 cut(s)	301, 410, 613, 627
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	23, 406
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	5 cut(s)	58, 147, 325, 379, 520
BseLI	CCNNNNNNNGG	3 cut(s)	296, 416, 670
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	98, 423
BseNI	ACTGG	4 cut(s)	301, 410, 613, 627
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	172, 187, 724, 758
BseYI	CCCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	4 cut(s)	20, 409, 576, 674
BsiHKAI	GWGCWC	2 cut(s)	85, 289
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	3 cut(s)	296, 416, 670
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	20, 409, 576, 674
Bsp1286I	GDGCHC	2 cut(s)	85, 289
Bsp143I	GATC	5 cut(s)	323, 366, 376, 444, 751
BspACI	CCGC	4 cut(s)	76, 275, 415, 440
BspANI	GGCC	4 cut(s)	20, 409, 576, 674
BspCNI	CTCAG	2 cut(s)	97, 424
BspLI	GGNNCC	2 cut(s)	233, 403
BspOI	GCTAGC	2 cut(s)	101, 395
BspPI	GGATC	2 cut(s)	331, 361
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	301, 410, 613, 627
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	5 cut(s)	323, 366, 376, 444, 751
Bst2UI	CCWGG	2 cut(s)	23, 406
Bst4CI	ACNGT	2 cut(s)	241, 540
BstC8I	GCNNGC	3 cut(s)	99, 393, 438
BstDEI	CTNAG	5 cut(s)	84, 258, 432, 448, 692
BstF5I	GGATG	5 cut(s)	58, 147, 325, 379, 520
BstKTI	GATC	5 cut(s)	326, 369, 379, 447, 754
BstMBI	GATC	5 cut(s)	323, 366, 376, 444, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 680, 743, 746
BstNI	CCWGG	2 cut(s)	23, 406
BstNSI	RCATGY	3 cut(s)	440, 456, 687
BstSCI	CCNGG	3 cut(s)	21, 369, 404
BstV1I	GCAGC	4 cut(s)	172, 187, 724, 758
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	20, 409, 576, 674
BtsCI	GGATG	5 cut(s)	58, 147, 325, 379, 520
BtsIMutI	CAGTG	2 cut(s)	417, 620
Cac8I	GCNNGC	3 cut(s)	99, 393, 438
Cfr13I	GGNCC	3 cut(s)	19, 494, 574
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	5 cut(s)	437, 453, 655, 676, 684
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	5 cut(s)	84, 258, 432, 448, 692
DpnI	GATC	5 cut(s)	325, 368, 378, 446, 753
DpnII	GATC	5 cut(s)	323, 366, 376, 444, 751
EaeI	YGGCCR	2 cut(s)	407, 672
Eco47I	GGWCC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	21, 404
EcoT22I	ATGCAT	1 cut(s)	685
FaeI	CATG	5 cut(s)	440, 456, 658, 679, 687
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	5 cut(s)	436, 452, 654, 675, 683
FauI	CCCGC	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	176, 186, 738, 747
FokI	GGATG	5 cut(s)	65, 154, 332, 386, 527
Fsp4HI	GCNGC	4 cut(s)	176, 186, 738, 747
FspBI	CTAG	2 cut(s)	98, 392
GluI	GCNGC	4 cut(s)	176, 186, 738, 747
GsaI	CCCAGC	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	20, 409, 576, 674
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	5 cut(s)	440, 456, 658, 679, 687
HinfI	GANTC	2 cut(s)	340, 608
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	2 cut(s)	87, 669
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	618
HpyAV	CCTTC	2 cut(s)	265, 732
HpyCH4III	ACNGT	2 cut(s)	241, 540
HpyCH4V	TGCA	6 cut(s)	518, 529, 683, 719, 740, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 680, 743, 746
HpyF3I	CTNAG	5 cut(s)	84, 258, 432, 448, 692
Hsp92II	CATG	5 cut(s)	440, 456, 658, 679, 687
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	323, 366, 376, 444, 751
LmnI	GCTCC	3 cut(s)	112, 292, 401
Lsp1109I	GCAGC	4 cut(s)	172, 187, 724, 758
LweI	GCATC	2 cut(s)	46, 505
MaeI	CTAG	2 cut(s)	98, 392
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	5 cut(s)	325, 368, 378, 446, 753
MboI	GATC	5 cut(s)	323, 366, 376, 444, 751
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	85, 289
MlsI	TGGCCA	2 cut(s)	409, 674
MluCI	AATT	3 cut(s)	224, 704, 741
MluNI	TGGCCA	2 cut(s)	409, 674
MlyI	GAGTC	2 cut(s)	334, 617
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	141, 175, 207, 261, 392
Mox20I	TGGCCA	2 cut(s)	409, 674
Mph1103I	ATGCAT	1 cut(s)	685
MscI	TGGCCA	2 cut(s)	409, 674
MseI	TTAA	3 cut(s)	42, 330, 766
MslI	CAYNNNNRTG	1 cut(s)	566
Msp20I	TGGCCA	2 cut(s)	409, 674
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	23, 371, 406
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	23, 406
MwoI	GCNNNNNNNGC	4 cut(s)	401, 680, 743, 746
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	5 cut(s)	323, 366, 376, 444, 751
NheI	GCTAGC	2 cut(s)	97, 391
NlaIII	CATG	5 cut(s)	440, 456, 658, 679, 687
NlaIV	GGNNCC	2 cut(s)	233, 403
NsiI	ATGCAT	1 cut(s)	685
NspI	RCATGY	3 cut(s)	440, 456, 687
OliI	CACNNNNGTG	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	440
PflMI	CCANNNNNTGG	2 cut(s)	296, 670
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	177, 187, 739, 748
PleI	GAGTC	2 cut(s)	334, 616
PpsI	GAGTC	2 cut(s)	334, 616
Psp6I	CCWGG	2 cut(s)	21, 404
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	2 cut(s)	21, 404
PspN4I	GGNNCC	2 cut(s)	233, 403
PspPI	GGNCC	3 cut(s)	19, 494, 574
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	3 cut(s)	42, 330, 766
SatI	GCNGC	4 cut(s)	176, 186, 738, 747
Sau3AI	GATC	5 cut(s)	323, 366, 376, 444, 751
Sau96I	GGNCC	3 cut(s)	19, 494, 574
SchI	GAGTC	2 cut(s)	334, 617
ScrFI	CCNGG	3 cut(s)	23, 371, 406
SduI	GDGCHC	2 cut(s)	85, 289
SetI	ASST	9 cut(s)	27, 93, 103, 117, 218, 233, 352, 361, 724
SfaNI	GCATC	2 cut(s)	46, 505
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	3 cut(s)	224, 704, 741
SsiI	CCGC	4 cut(s)	76, 275, 415, 440
SspMI	CTAG	2 cut(s)	98, 392
StyD4I	CCNGG	3 cut(s)	21, 369, 404
TaaI	ACNGT	2 cut(s)	241, 540
TaqI	TCGA	2 cut(s)	212, 542
TasI	AATT	3 cut(s)	224, 704, 741
TatI	WGTACW	1 cut(s)	758
Tru1I	TTAA	3 cut(s)	42, 330, 766
Tru9I	TTAA	3 cut(s)	42, 330, 766
TscAI	CASTG	2 cut(s)	417, 627
TseI	GCWGC	4 cut(s)	175, 185, 737, 746
TspDTI	ATGAA	1 cut(s)	560
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	2 cut(s)	417, 627
Van91I	CCANNNNNTGG	2 cut(s)	296, 670
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	3 cut(s)	440, 456, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	617
XspI	CTAG	2 cut(s)	98, 392
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.