MD14G1180600.v1.1

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
27320411 .. 27325365
4955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1180600.v1.1.491

Sequence Viewer

Length: 1455 bp
ATGAGGGAGGAACAAGTGCAAAATGCTGTTAAATTCCTTTCGCACCCGAAAGTTAGGGGCTCTCCTGTTGTTTACAGACGGTCTTTTCTCGAGAAGAAGGGGCTCACAAAAGAAGAGATTGACGAAGCATTTCGGCGTGTGCCTGACCCACCTTCAGGTACGCAGGCAACTATCGGAAATCAAGATGGACAGGTGAAGACATCGTCAAATGTTCAGGCACAAAATACAACTCAAACTTTGCAGCCTTCCGCCGCTGCTCCCACTAAAGCAATTTCCCCTGTGGGTACGTTAACTGGGTATAGATTTCGCTGGTCTCATGCCATTGTTGCTGTAGGAGTACTGACACTTTCTGGTTGTGGAGCAGCTGTACTAATTAAGAAATCTTTTATTCCTAGATTGAAGGCTTGGATACGCAAGGTTGTATTGGAAGATGAGAATGATGTTAAGAATAAAGTTGACGCGAAACCAAGTTTGGCAGAAGAAGCTGCGGCAGCTGCTAAAACAGCCGCAGCCGCAGCATCAGATGTGGCAAAAGTAAGCCAGGAAATGCTGAATTCTAAGACTGAAGAGAGGAAATACTTCGTGGAACTCATGAGTTTGTTGGATGTGCAAGTGCAAGAAATGAAGTCAATGAGTAATTCCATACGGAAATTGGAAGGAGAAACAAAAGCCTCGAGAACCTCTCTTGTTGATCATGAAGACAATCGCATCGCTATCACAAATTCAAAGCAACAGTATGTGAATGGCAAGGCAGAGTATGACGTGCGCTCAGTGCAATCTTCCTCAGCTGCTGCATCTGTGGAACCAGCACCTCATCCAAAGTCTTATATGGATATCATGGCCATGGTACAAAGAGGGGAGAAACCTCCTAATGTCAAAGACATTGATGATTTTCTCCCGAACCCTAATCAGCAACTATCAAATCCTCGCTTGGCACCTAGAGCTAAGCCTTGGGAAGTTGGTCAGGCCCAAAACAACCCGAGCCAAGCGCTTCAATCTCAAGTAAGCGGTGACAGTTTGAATTCCAGCATTCAGGACAATGGGCTCAATTATCAGTCAAACGGTGACAGTACAGTGCCGTGGTGGCAGCAGCAGCAGCAGAAAAATTCCAGAATCACTGAGATAGAAAATGAAGTCAATGGAGGGTCGTATGGTGTACGAACTAGTGAGCAACCGGTTCAGCGTACATGGGTTCCTCCCCAGCCACCCCCTGTTGCAATGGCAGCAGCAGCTGAAGCTATCCGACGGCCAAAACCATCAGTGCAGAAAGAACAGCTGGGTAACGATCTGCCCATTGCACACCCATCAGAAGCGACCAATGGCCCATCAGACGGGGCGGATGAGTTGCAGAGGGTAACAAAATTAGCTGAATCTGGAGGTGAATCGGAGCAAATCAATGGGAGTTCACCGCTGAACTCTACTACCGAGATACAAGAAGAGGAAGTGAGCCGTTAA

Protein Analysis

485

Amino Acids

52.75

Weight (kDa)

6.32

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 2 - 46 1.8e-13 Pex14 N-terminal domain
PEX14-like_2nd PF23020 101 - 219 8.7e-55 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 271 - 319 6.9e-16 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 934
AccII CGCG 1 cut(s) 461
AciI CCGC 8 cut(s) 249, 252, 488, 507, 513, 1008, 1337, 1409
AcoI YGGCCR 2 cut(s) 840, 1247
AcsI RAATTY 5 cut(s) 32, 553, 721, 1021, 1105
AcuI CTGAAG 3 cut(s) 138, 585, 1254
AfaI GTAC 8 cut(s) 160, 286, 339, 369, 849, 1072, 1158, 1186
AfeI AGCGCT 1 cut(s) 990
AfiI CCNNNNNNNGG 2 cut(s) 155, 1331
AgeI ACCGGT 1 cut(s) 1174
AgsI TTSAA 4 cut(s) 400, 726, 995, 1021
AhlI ACTAGT 1 cut(s) 1163
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 9 cut(s) 365, 485, 494, 788, 944, 1232, 1238, 1276, 1367
AluI AGCT 9 cut(s) 365, 485, 494, 788, 944, 1232, 1238, 1276, 1367
Alw26I GTCTC 1 cut(s) 318
AlwNI CAGNNNCTG 2 cut(s) 791, 1232
Ama87I CYCGRG 3 cut(s) 89, 673, 979
Aor51HI AGCGCT 1 cut(s) 990
AoxI GGCC 4 cut(s) 840, 966, 1247, 1321
ApoI RAATTY 5 cut(s) 32, 553, 721, 1021, 1105
AsiGI ACCGGT 1 cut(s) 1174
Asp700I GAANNNNTTC 2 cut(s) 129, 578
AspLEI GCGC 2 cut(s) 768, 991
AspS9I GGNCC 2 cut(s) 967, 1322
AsuHPI GGTGA 5 cut(s) 205, 1022, 1076, 1391, 1398
AvaI CYCGRG 3 cut(s) 89, 673, 979
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 1 cut(s) 934
BanII GRGCYC 3 cut(s) 62, 105, 1047
BbsI GAAGAC 2 cut(s) 203, 705
BbvCI CCTCAGC 1 cut(s) 784
BccI CCATC 4 cut(s) 179, 1264, 1312, 1333
BceAI ACGGC 3 cut(s) 1063, 1262, 1434
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 318
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 3 cut(s) 393, 939, 1164
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 992
BfuI GTATCC 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 1084
BlpI GCTNAGC 1 cut(s) 945
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 542
BmeT110I CYCGRG 3 cut(s) 89, 673, 979
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 2 cut(s) 967, 1322
BmiI GGNNCC 3 cut(s) 804, 936, 1194
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 3 cut(s) 527, 717, 803
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 2 cut(s) 203, 705
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpmI CTGGAG 1 cut(s) 1395
Bpu10I CCTNAGC 1 cut(s) 784
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 843, 950, 1079
BsaWI WCCGGW 1 cut(s) 1174
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 1331
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 2 cut(s) 1224, 1293
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 843, 950, 1079
BseGI GGATG 3 cut(s) 610, 814, 1345
BseLI CCNNNNNNNGG 2 cut(s) 155, 1331
BseMI GCAATG 2 cut(s) 1224, 1293
BseMII CTCAG 3 cut(s) 783, 798, 1110
BseNI ACTGG 1 cut(s) 298
BseYI CCCAGC 2 cut(s) 1200, 1276
BsgI GTGCAG 1 cut(s) 1283
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 4 cut(s) 842, 968, 1249, 1323
BshNI GGYRCC 1 cut(s) 934
BshTI ACCGGT 1 cut(s) 1174
BsiHKCI CYCGRG 3 cut(s) 89, 673, 979
BsiSI CCGG 1 cut(s) 1175
BslI CCNNNNNNNGG 2 cut(s) 155, 1331
BsmAI GTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 4 cut(s) 842, 968, 1249, 1323
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 3 cut(s) 89, 673, 979
Bsp1286I GDGCHC 3 cut(s) 62, 105, 1047
Bsp143I GATC 2 cut(s) 691, 1285
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 1 cut(s) 843
BspACI CCGC 8 cut(s) 249, 252, 488, 507, 513, 1008, 1337, 1409
BspANI GGCC 4 cut(s) 842, 968, 1249, 1323
BspCNI CTCAG 3 cut(s) 782, 797, 1111
BspFNI CGCG 1 cut(s) 461
BspHI TCATGA 2 cut(s) 591, 694
BspLI GGNNCC 3 cut(s) 804, 936, 1194
BspT107I GGYRCC 1 cut(s) 934
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 1224, 1293
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 3 cut(s) 843, 950, 1079
BssMI GATC 2 cut(s) 691, 1285
BssT1I CCWWGG 2 cut(s) 843, 950
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 6 cut(s) 81, 735, 1016, 1064, 1070, 1075
Bst6I CTCTTC 3 cut(s) 108, 561, 1431
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 5 cut(s) 558, 769, 784, 945, 1119
BstDSI CCRYGG 2 cut(s) 843, 1079
BstF5I GGATG 3 cut(s) 610, 814, 1345
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 992
BstHHI GCGC 2 cut(s) 768, 991
BstKTI GATC 2 cut(s) 694, 1288
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 691, 1285
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 461
BstV2I GAAGAC 2 cut(s) 203, 705
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 4 cut(s) 842, 968, 1249, 1323
BtgI CCRYGG 2 cut(s) 843, 1079
BtgZI GCGATG 1 cut(s) 694
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 3 cut(s) 610, 814, 1345
BtsIMutI CAGTG 4 cut(s) 777, 1080, 1116, 1266
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 2 cut(s) 791, 1232
CciI TCATGA 2 cut(s) 591, 694
CfoI GCGC 2 cut(s) 768, 991
Cfr10I RCCGGY 1 cut(s) 1174
Cfr13I GGNCC 2 cut(s) 967, 1322
CseI GACGC 1 cut(s) 467
Csp6I GTAC 8 cut(s) 159, 285, 338, 368, 848, 1071, 1157, 1185
CspAI ACCGGT 1 cut(s) 1174
CviAII CATG 6 cut(s) 317, 592, 695, 838, 844, 1188
CviQI GTAC 8 cut(s) 159, 285, 338, 368, 848, 1071, 1157, 1185
DdeI CTNAG 5 cut(s) 558, 769, 784, 945, 1119
DpnI GATC 2 cut(s) 693, 1287
DpnII GATC 2 cut(s) 691, 1285
EaeI YGGCCR 2 cut(s) 840, 1247
Eam1104I CTCTTC 3 cut(s) 108, 561, 1431
EarI CTCTTC 3 cut(s) 108, 561, 1431
EciI GGCGGA 2 cut(s) 238, 1352
Eco130I CCWWGG 2 cut(s) 843, 950
Eco24I GRGCYC 3 cut(s) 62, 105, 1047
Eco31I GGTCTC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 835
Eco47III AGCGCT 1 cut(s) 990
Eco57I CTGAAG 3 cut(s) 138, 585, 1254
Eco88I CYCGRG 3 cut(s) 89, 673, 979
EcoRI GAATTC 2 cut(s) 553, 1021
EcoRII CCWGG 1 cut(s) 540
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 2 cut(s) 843, 950
EcoT38I GRGCYC 3 cut(s) 62, 105, 1047
ErhI CCWWGG 2 cut(s) 843, 950
FaeI CATG 6 cut(s) 320, 595, 698, 841, 847, 1191
FatI CATG 6 cut(s) 316, 591, 694, 837, 843, 1187
FbaI TGATCA 1 cut(s) 691
FokI GGATG 3 cut(s) 617, 801, 1352
FriOI GRGCYC 3 cut(s) 62, 105, 1047
FspBI CTAG 3 cut(s) 393, 939, 1164
GlaI GCGC 2 cut(s) 767, 990
GsaI CCCAGC 2 cut(s) 1204, 1280
GsuI CTGGAG 1 cut(s) 1395
HaeII RGCGCY 1 cut(s) 992
HaeIII GGCC 4 cut(s) 842, 968, 1249, 1323
HapII CCGG 1 cut(s) 1175
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 768, 991
Hin1II CATG 6 cut(s) 320, 595, 698, 841, 847, 1191
Hin6I GCGC 2 cut(s) 766, 989
HinP1I GCGC 2 cut(s) 766, 989
HincII GTYRAC 2 cut(s) 291, 457
HindII GTYRAC 2 cut(s) 291, 457
HinfI GANTC 3 cut(s) 1113, 1370, 1382
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 1175
HphI GGTGA 5 cut(s) 205, 1022, 1076, 1391, 1398
Hpy166II GTNNAC 5 cut(s) 73, 291, 457, 1157, 1406
Hpy188I TCNGA 6 cut(s) 176, 523, 1244, 1309, 1330, 1387
Hpy8I GTNNAC 5 cut(s) 73, 291, 457, 1157, 1406
Hpy99I CGWCG 1 cut(s) 1248
HpyAV CCTTC 5 cut(s) 91, 162, 255, 394, 650
HpyCH4III ACNGT 6 cut(s) 81, 735, 1016, 1064, 1070, 1075
HpyCH4IV ACGT 2 cut(s) 287, 762
HpyF3I CTNAG 5 cut(s) 558, 769, 784, 945, 1119
HpySE526I ACGT 2 cut(s) 287, 762
Hsp92II CATG 6 cut(s) 320, 595, 698, 841, 847, 1191
HspAI GCGC 2 cut(s) 766, 989
Ksp22I TGATCA 1 cut(s) 691
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 691, 1285
LmnI GCTCC 3 cut(s) 262, 359, 1387
LweI GCATC 3 cut(s) 527, 717, 803
MaeI CTAG 3 cut(s) 393, 939, 1164
MaeII ACGT 2 cut(s) 287, 762
MaeIII GTNAC 4 cut(s) 1010, 1064, 1280, 1354
MalI GATC 2 cut(s) 693, 1287
MboI GATC 2 cut(s) 691, 1285
MboII GAAGA 9 cut(s) 106, 125, 208, 440, 491, 578, 710, 771, 1448
MhlI GDGCHC 3 cut(s) 62, 105, 1047
MlsI TGGCCA 1 cut(s) 842
MluNI TGGCCA 1 cut(s) 842
MmeI TCCRAC 2 cut(s) 582, 1267
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 2 cut(s) 129, 578
MscI TGGCCA 1 cut(s) 842
MseI TTAA 5 cut(s) 30, 290, 375, 444, 1453
MslI CAYNNNNRTG 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 842
MspA1I CMGCKG 7 cut(s) 254, 365, 494, 788, 1232, 1276, 1411
MspI CCGG 1 cut(s) 1175
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 1029
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 461
NcoI CCATGG 1 cut(s) 843
NdeII GATC 2 cut(s) 691, 1285
NlaIII CATG 6 cut(s) 320, 595, 698, 841, 847, 1191
NlaIV GGNNCC 3 cut(s) 804, 936, 1194
NmuCI GTSAC 2 cut(s) 1010, 1064
PaeR7I CTCGAG 2 cut(s) 89, 673
PagI TCATGA 2 cut(s) 591, 694
PctI GAATGC 1 cut(s) 1029
PdmI GAANNNNTTC 2 cut(s) 129, 578
PfeI GAWTC 3 cut(s) 1113, 1370, 1382
PflFI GACNNNGTC 1 cut(s) 202
PinAI ACCGGT 1 cut(s) 1174
Psp6I CCWGG 1 cut(s) 540
PspFI CCCAGC 2 cut(s) 1200, 1276
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 3 cut(s) 804, 936, 1194
PspPI GGNCC 2 cut(s) 967, 1322
PstNI CAGNNNCTG 2 cut(s) 791, 1232
PsyI GACNNNGTC 1 cut(s) 202
PvuII CAGCTG 5 cut(s) 365, 494, 788, 1232, 1276
RsaI GTAC 8 cut(s) 160, 286, 339, 369, 849, 1072, 1158, 1186
RsaNI GTAC 8 cut(s) 159, 285, 338, 368, 848, 1071, 1157, 1185
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 5 cut(s) 30, 290, 375, 444, 1453
Sau3AI GATC 2 cut(s) 691, 1285
Sau96I GGNCC 2 cut(s) 967, 1322
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 3 cut(s) 62, 105, 1047
SfaNI GCATC 3 cut(s) 527, 717, 803
SfcI CTRYAG 1 cut(s) 330
Sfr274I CTCGAG 2 cut(s) 89, 673
SlaI CTCGAG 2 cut(s) 89, 673
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 3 cut(s) 89, 673, 999
SmoI CTYRAG 3 cut(s) 89, 673, 999
SpeI ACTAGT 1 cut(s) 1163
SsiI CCGC 8 cut(s) 249, 252, 488, 507, 513, 1008, 1337, 1409
SspMI CTAG 3 cut(s) 393, 939, 1164
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 843, 950
TaaI ACNGT 6 cut(s) 81, 735, 1016, 1064, 1070, 1075
TaiI ACGT 2 cut(s) 290, 765
TaqI TCGA 2 cut(s) 90, 674
TatI WGTACW 3 cut(s) 337, 367, 1070
TauI GCSGC 4 cut(s) 254, 491, 509, 515
TfiI GAWTC 3 cut(s) 1113, 1370, 1382
Tru1I TTAA 5 cut(s) 30, 290, 375, 444, 1453
Tru9I TTAA 5 cut(s) 30, 290, 375, 444, 1453
TscAI CASTG 4 cut(s) 777, 1080, 1123, 1266
TseFI GTSAC 2 cut(s) 1010, 1064
Tsp45I GTSAC 2 cut(s) 1010, 1064
TspDTI ATGAA 3 cut(s) 638, 711, 1146
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 4 cut(s) 777, 1080, 1123, 1266
Tth111I GACNNNGTC 1 cut(s) 202
XapI RAATTY 5 cut(s) 32, 553, 721, 1021, 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XhoI CTCGAG 2 cut(s) 89, 673
XmnI GAANNNNTTC 2 cut(s) 129, 578
XspI CTAG 3 cut(s) 393, 939, 1164
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.