Rw7G011690

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
10981915 .. 10986158
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011690.1

Sequence Viewer

Length: 1563 bp
ATGAGAAGCAGCTCAAATAGCATTTTTCAAAGTCTTGAAAGCGAGGCTACACATAATGAAAGACAGTTTTTGCTCTGTCTTGCTGAGGCTCAGCAAGATGTTGCAGCTGAGCCTCCGAAGCAAACTTCTAGCCCATCGGTGTTTGTGAATTCCGAACCAATGAGAGAGGACCAAGTGCAAAATGCTGTGAAGTTTCTTTCGCACCCAAAAGTTAAGGGCTCTCCTGTCATCTACAGGCGCTCTTTTCTTGAGAAGAAGGGGCTTAGAAGGAGGAGATTGATGAGCGACCCACCTCCAAGTGCACAGGCAACTACTGCAAATCAAGCTGATGGACAAGCGAAGACAACAAACATTCAGGCACAAAGTTCAAATCAAACTTTGCAGCCTGCTAGTTCTACTGCCCCGGTGGGTACCTTAGCTCGGTATAGATTCCACTGGTCTCATGCCATTCTTGCTGTAGGATTACTGGCAGCTTCAGGTGCTGGAACTGCTTACTTATTAAGGTTGAGGTCTTGGGTACGAAAGGTTGTATTGGAGGATGACAATGACGTTGAGAAGAAAACTGACACGAAACCCAGTTTAGCAGAAGAAGCTGCAGCAGCGGCTAAGTCAGCTGCAGCTGCAGCAGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGAATTCTAAGACTGAAGAGAGGAAATACTTTGGGGAACTTATGAGTTTGTTAGATGTGCAAGTGCAAGAAATGAAGTCAATGAGTAATTCCATACGGAAATTGGAAGGAGAAACGAGGGCCTCAAGAGCCTCTCTTGTTGATCACGAAGATAGTCGACTCACAGTCACAAAGTCAAAGCAACAATATGTGAATGGCAAGGCAGAGTACGACATGCACTCAGTGCAATCTTTCTCAGTTCCTGCATCTGTGGAACCATCTGCTGCACCTCACTCAAAGTCTTATATGGAGATCATGGCCATGGTACAAAGAGGGGAGAAACCTCCTAATGTCAGAGAAATTGATGATTTACCGCCCAATCCTAATCAGCAGCCATCAAATCCTCGCTTGGTTCCTAGAGCCAAGCCTTGGGAGCTTGGTCAGACCCAAAACAACTCAAGCCAAGTATATCAGACCCATACAAGTAGCGAAGCCTTCAGTTCGAGCACGCAGGAGAATGGGCTCAATTATTTAAATGGTGACAGTTCAGTGCCTTGGTGGCAGCGGAAAACTCCCAGTATCACAGAGATAGAAAATGAAGATGAAGTCAAGGCAGCTAGTTCGCAAGTTGTTAGGCAGCCGGTTCAGCGTGCATGGGTTCCTCCCCAGCCACCCCCAGTTGCAATGCCAGAAGCAGCTGAAGCCATCCGACGGCCAAAACCATCAGTGCAGAGAGAATCTCTGGGTAATGATCAGGCCGTAGCACGTTCTTCATCAGATGTGACTGATGAGTTGCAGAGGGTAACAAAAATATCCGAATCTGGAGGTGCATTGGAGATGAACAATGGGAATGCTGCAGAAATCAGTAATGGGAATTCATATCTGAACTCTACCGAGATACATGAAGAGCAAGAAAACTATGAGTAA

Protein Analysis

520

Amino Acids

57.18

Weight (kDa)

5.98

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex14_N PF04695 55 - 89 2.1e-08 Pex14 N-terminal domain
PEX14-like_2nd PF23020 143 - 255 9.9e-50 Peroxisomal membrane protein PEX14-like, central
KPWE_dom PF17733 309 - 357 8.2e-16 PEX14-like KPWE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 410
AccB1I GGYRCC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 1065
AccI GTMKAC 1 cut(s) 814
AciI CCGC 3 cut(s) 602, 1010, 1201
AcoI YGGCCR 2 cut(s) 954, 1349
AcsI RAATTY 3 cut(s) 148, 661, 1510
AcuI CTGAAG 4 cut(s) 459, 693, 1117, 1356
AdeI CACNNNGTG 1 cut(s) 880
AfaI GTAC 4 cut(s) 412, 519, 866, 963
AfiI CCNNNNNNNGG 3 cut(s) 420, 1065, 1347
AgsI TTSAA 3 cut(s) 29, 38, 369
AhdI GACNNNNNGTC 1 cut(s) 821
Alw21I GWGCWC 2 cut(s) 304, 1145
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 300
AlwNI CAGNNNCTG 2 cut(s) 482, 899
AoxI GGCC 4 cut(s) 777, 954, 1349, 1392
ApaLI GTGCAC 1 cut(s) 300
ApoI RAATTY 3 cut(s) 148, 661, 1510
Asp718I GGTACC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 169, 777
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 1187
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 2 cut(s) 221, 1161
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 304, 1145
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 6 cut(s) 142, 323, 922, 1039, 1349, 1366
BceAI ACGGC 2 cut(s) 1364, 1379
BcgI CGANNNNNNTGC 2 cut(s) 1239, 1273
BclI TGATCA 2 cut(s) 799, 1387
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 4 cut(s) 129, 390, 1053, 1254
BfmI CTRYAG 6 cut(s) 232, 456, 594, 615, 621, 1491
BfoI RGCGCY 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 1195
BlpI GCTNAGC 2 cut(s) 90, 108
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 169
BmeRI GACNNNNNGTC 1 cut(s) 821
BmgT120I GGNCC 2 cut(s) 169, 777
BmiI GGNNCC 4 cut(s) 412, 912, 1050, 1296
BmrFI CCNGG 1 cut(s) 404
BmrI ACTGGG 3 cut(s) 570, 1206, 1307
BmsI GCATC 1 cut(s) 911
BmuI ACTGGG 3 cut(s) 570, 1206, 1307
BpiI GAAGAC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 1360, 1392
BpmI CTGGAG 1 cut(s) 1479
Bpu10I CCTNAGC 2 cut(s) 84, 415
Bpu1102I GCTNAGC 2 cut(s) 90, 108
BpuEI CTTGAG 3 cut(s) 269, 766, 1078
BpuMI CCSGG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 4 cut(s) 402, 957, 1064, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 1065, 1347
Bse118I RCCGGY 1 cut(s) 1276
Bse1I ACTGG 5 cut(s) 440, 471, 576, 1212, 1313
Bse3DI GCAATG 1 cut(s) 1326
BseDI CCNNGG 4 cut(s) 402, 957, 1064, 1190
BseGI GGATG 2 cut(s) 544, 1341
BseLI CCNNNNNNNGG 3 cut(s) 420, 1065, 1347
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 5 cut(s) 75, 99, 104, 891, 906
BseNI ACTGG 5 cut(s) 440, 471, 576, 1212, 1313
BseRI GAGGAG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 1302
BsgI GTGCAG 2 cut(s) 906, 1385
BshFI GGCC 4 cut(s) 779, 956, 1351, 1394
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 304, 1145
BsiSI CCGG 2 cut(s) 404, 1277
BslI CCNNNNNNNGG 3 cut(s) 420, 1065, 1347
BsmAI GTCTC 1 cut(s) 444
BsmI GAATGC 1 cut(s) 1492
BsnI GGCC 4 cut(s) 779, 956, 1351, 1394
Bso31I GGTCTC 1 cut(s) 444
Bsp1286I GDGCHC 4 cut(s) 221, 304, 1145, 1161
Bsp143I GATC 3 cut(s) 799, 948, 1387
Bsp1720I GCTNAGC 2 cut(s) 90, 108
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 3 cut(s) 602, 1010, 1201
BspANI GGCC 4 cut(s) 779, 956, 1351, 1394
BspCNI CTCAG 5 cut(s) 76, 100, 103, 890, 905
BspLI GGNNCC 4 cut(s) 412, 912, 1050, 1296
BspMAI CTGCAG 4 cut(s) 598, 619, 625, 1495
BspQI GCTCTTC 1 cut(s) 1536
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 1326
BsrFI RCCGGY 1 cut(s) 1276
BsrI ACTGG 5 cut(s) 440, 471, 576, 1212, 1313
BssAI RCCGGY 1 cut(s) 1276
BssECI CCNNGG 4 cut(s) 402, 957, 1064, 1190
BssMI GATC 3 cut(s) 799, 948, 1387
BssT1I CCWWGG 3 cut(s) 957, 1064, 1190
Bst4CI ACNGT 3 cut(s) 66, 823, 1181
Bst6I CTCTTC 2 cut(s) 669, 1536
BstAPI GCANNNNNTGC 2 cut(s) 314, 880
BstC8I GCNNGC 4 cut(s) 387, 646, 1145, 1287
BstDEI CTNAG 9 cut(s) 84, 90, 108, 263, 415, 606, 666, 877, 892
BstDSI CCRYGG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 544, 1341
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 802, 951, 1390
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 799, 948, 1387
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 6 cut(s) 232, 456, 594, 615, 621, 1491
BstSLI GKGCMC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 347
BsuRI GGCC 4 cut(s) 779, 956, 1351, 1394
BtgI CCRYGG 1 cut(s) 957
BtsCI GGATG 2 cut(s) 544, 1341
BtsIMutI CAGTG 4 cut(s) 433, 885, 1191, 1368
Cac8I GCNNGC 4 cut(s) 387, 646, 1145, 1287
CaiI CAGNNNCTG 2 cut(s) 482, 899
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 1276
Cfr13I GGNCC 2 cut(s) 169, 777
Csp6I GTAC 4 cut(s) 411, 518, 865, 962
CviAII CATG 6 cut(s) 443, 871, 952, 958, 1290, 1538
CviQI GTAC 4 cut(s) 411, 518, 865, 962
DdeI CTNAG 9 cut(s) 84, 90, 108, 263, 415, 606, 666, 877, 892
DpnI GATC 3 cut(s) 801, 950, 1389
DpnII GATC 3 cut(s) 799, 948, 1387
DraI TTTAAA 1 cut(s) 1170
DraIII CACNNNGTG 1 cut(s) 880
DriI GACNNNNNGTC 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 954, 1349
Eam1104I CTCTTC 2 cut(s) 669, 1536
Eam1105I GACNNNNNGTC 1 cut(s) 821
EarI CTCTTC 2 cut(s) 669, 1536
Eco130I CCWWGG 3 cut(s) 957, 1064, 1190
Eco24I GRGCYC 2 cut(s) 221, 1161
Eco31I GGTCTC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 4 cut(s) 459, 693, 1117, 1356
EcoO109I RGGNCCY 1 cut(s) 777
EcoRI GAATTC 3 cut(s) 148, 661, 1510
EcoT14I CCWWGG 3 cut(s) 957, 1064, 1190
EcoT38I GRGCYC 2 cut(s) 221, 1161
ErhI CCWWGG 3 cut(s) 957, 1064, 1190
FaeI CATG 6 cut(s) 446, 874, 955, 961, 1293, 1541
FatI CATG 6 cut(s) 442, 870, 951, 957, 1289, 1537
FbaI TGATCA 2 cut(s) 799, 1387
FblI GTMKAC 1 cut(s) 814
FokI GGATG 2 cut(s) 551, 1328
FriOI GRGCYC 2 cut(s) 221, 1161
FspBI CTAG 4 cut(s) 129, 390, 1053, 1254
GlaI GCGC 1 cut(s) 239
GsaI CCCAGC 1 cut(s) 1306
GsuI CTGGAG 1 cut(s) 1479
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 4 cut(s) 779, 956, 1351, 1394
HapII CCGG 2 cut(s) 404, 1277
HhaI GCGC 1 cut(s) 240
Hin1II CATG 6 cut(s) 446, 874, 955, 961, 1293, 1541
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 815
HindII GTYRAC 1 cut(s) 815
HinfI GANTC 4 cut(s) 429, 816, 1373, 1454
HpaII CCGG 2 cut(s) 404, 1277
HphI GGTGA 1 cut(s) 1187
Hpy166II GTNNAC 2 cut(s) 302, 815
Hpy188I TCNGA 9 cut(s) 117, 154, 992, 1080, 1110, 1346, 1414, 1453, 1521
Hpy188III TCNNGA 5 cut(s) 35, 248, 783, 803, 1458
Hpy8I GTNNAC 2 cut(s) 302, 815
Hpy99I CGWCG 1 cut(s) 1350
HpyAV CCTTC 4 cut(s) 250, 261, 758, 1141
HpyCH4III ACNGT 3 cut(s) 66, 823, 1181
HpyCH4IV ACGT 2 cut(s) 549, 1402
HpyF3I CTNAG 9 cut(s) 84, 90, 108, 263, 415, 606, 666, 877, 892
HpySE526I ACGT 2 cut(s) 549, 1402
Hsp92II CATG 6 cut(s) 446, 874, 955, 961, 1293, 1541
HspAI GCGC 1 cut(s) 238
KpnI GGTACC 1 cut(s) 414
Ksp22I TGATCA 2 cut(s) 799, 1387
Kzo9I GATC 3 cut(s) 799, 948, 1387
LguI GCTCTTC 1 cut(s) 1536
LmnI GCTCC 1 cut(s) 1069
LweI GCATC 1 cut(s) 911
MaeI CTAG 4 cut(s) 129, 390, 1053, 1254
MaeII ACGT 2 cut(s) 549, 1402
MaeIII GTNAC 4 cut(s) 823, 1175, 1417, 1438
MalI GATC 3 cut(s) 801, 950, 1389
MboI GATC 3 cut(s) 799, 948, 1387
MboII GAAGA 9 cut(s) 265, 352, 568, 599, 686, 818, 1247, 1398, 1553
MhlI GDGCHC 4 cut(s) 221, 304, 1145, 1161
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 7 cut(s) 148, 661, 745, 758, 996, 1162, 1510
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 1 cut(s) 1369
Mox20I TGGCCA 1 cut(s) 956
MscI TGGCCA 1 cut(s) 956
MseI TTAA 3 cut(s) 213, 500, 1169
MslI CAYNNNNRTG 1 cut(s) 956
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 6 cut(s) 107, 602, 614, 620, 1201, 1334
MspI CCGG 2 cut(s) 404, 1277
MspR9I CCNGG 1 cut(s) 404
Mva1269I GAATGC 1 cut(s) 1492
NciI CCSGG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 957
NdeII GATC 3 cut(s) 799, 948, 1387
NlaIII CATG 6 cut(s) 446, 874, 955, 961, 1293, 1541
NlaIV GGNNCC 4 cut(s) 412, 912, 1050, 1296
NmuCI GTSAC 3 cut(s) 823, 1175, 1417
NspI RCATGY 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 1536
PctI GAATGC 1 cut(s) 1492
PfeI GAWTC 3 cut(s) 429, 1373, 1454
PflMI CCANNNNNTGG 1 cut(s) 1065
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 1302
PspN4I GGNNCC 4 cut(s) 412, 912, 1050, 1296
PspPI GGNCC 2 cut(s) 169, 777
PstI CTGCAG 4 cut(s) 598, 619, 625, 1495
PstNI CAGNNNCTG 2 cut(s) 482, 899
PvuII CAGCTG 4 cut(s) 107, 614, 620, 1334
RsaI GTAC 4 cut(s) 412, 519, 866, 963
RsaNI GTAC 4 cut(s) 411, 518, 865, 962
RseI CAYNNNNRTG 1 cut(s) 956
SalI GTCGAC 1 cut(s) 813
SapI GCTCTTC 1 cut(s) 1536
SaqAI TTAA 3 cut(s) 213, 500, 1169
Sau3AI GATC 3 cut(s) 799, 948, 1387
Sau96I GGNCC 2 cut(s) 169, 777
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 4 cut(s) 221, 304, 1145, 1161
SfaNI GCATC 1 cut(s) 911
SfcI CTRYAG 6 cut(s) 232, 456, 594, 615, 621, 1491
SinI GGWCC 1 cut(s) 169
SmiI ATTTAAAT 1 cut(s) 1170
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 3 cut(s) 248, 781, 1093
SmoI CTYRAG 3 cut(s) 248, 781, 1093
Sse9I AATT 7 cut(s) 148, 661, 745, 758, 996, 1162, 1510
SsiI CCGC 3 cut(s) 602, 1010, 1201
SspMI CTAG 4 cut(s) 129, 390, 1053, 1254
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 3 cut(s) 957, 1064, 1190
SwaI ATTTAAAT 1 cut(s) 1170
TaaI ACNGT 3 cut(s) 66, 823, 1181
TaiI ACGT 2 cut(s) 552, 1405
TaqI TCGA 2 cut(s) 814, 1139
TasI AATT 7 cut(s) 148, 661, 745, 758, 996, 1162, 1510
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 3 cut(s) 429, 1373, 1454
Tru1I TTAA 3 cut(s) 213, 500, 1169
Tru9I TTAA 3 cut(s) 213, 500, 1169
TscAI CASTG 4 cut(s) 440, 885, 1191, 1368
TseFI GTSAC 3 cut(s) 823, 1175, 1417
Tsp45I GTSAC 3 cut(s) 823, 1175, 1417
TspDTI ATGAA 8 cut(s) 72, 746, 1248, 1254, 1398, 1490, 1503, 1554
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 4 cut(s) 440, 885, 1191, 1368
Van91I CCANNNNNTGG 1 cut(s) 1065
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 3 cut(s) 148, 661, 1510
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmiI GTMKAC 1 cut(s) 814
XspI CTAG 4 cut(s) 129, 390, 1053, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.