AT5G63620

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010272
Physical Location & Seq
Reverse (-)
25466128 .. 25468550
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63620.2

Sequence Viewer

Length: 1284 bp
ATGGCGTTTGCTCCGATTCTCCGCCGCGCCTCCGCCGTTAAGAACCTCTTCTCTTTAACAAGACTCGCCGTTGGCTCTGCCCTCTCCACTAGGTCTCTCCAAACCGGAGCCTCCGGCGATGATTCTCAATCGATGGGTGGGTATCACGTGAGCCCCGGCGGATTCATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGTTCGCTAGTCCTTGTGTTATTGGTCATGAGATTACTGGTGAAGTTGTTGAACATGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTGGAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTATGTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATGATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGTACTGTGTTACACCAGCTCATGGTTTAGCTCCTCTACCAGAGTCTTTGCCCTACTCTGAATCTGCCATTCTGGGATGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGATCCGTCCTGGAGATTCTATTGCAGTTATTGGAATTGGTGGTGTGGGCTCCAGTTGTTTGCAGATCGCAAGGGCTTTTGGAGCCTCGGATATCATTGCTGTGGATGTTCAGGATGATAAATTACAGAAGGCCAAGACACTTGGTGCTACTCATATTGTCAATGCTGCTAAAGAAGATGCTGTTGAAAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGGGAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGATGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAGTGAAATTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGTTTGAAGATGCAGGAAAAGCATTTCAAGATCTCAACGAAGGCAAAATCGTGAGCCGAGGTGTTGTTGAGATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

427

Amino Acids

45.5

Weight (kDa)

7.57

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 80 - 216 3.4e-25 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 237 - 414 4.1e-07 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 256 - 387 1.1e-32 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 289 - 418 4.3e-12 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63620 AT5G63620 AT5G63620
fragaria_vesca FvH4_1g25480 FvH4_1g25480 FvH4_1g25480 FvH4_1g25480
malus_domestica MD00G1129200.v1.1
prunus_persica Prupe.4G281800_v2.0.a1
pyrus_communis pycom520g00640
rosa_chinensis RchiOBHm_Chr2g0123611
rosa_laevigata RLG00000018760
rosa_multiflora Rmu_sc0005477.1_g000001 Rmu_ssc0000091.1_g000016
rosa_roxburghii Rroxscaffold_2G00120540
rosa_rugosa Rorug02G0246400
rosa_samantha Rh2AG305700 Rh2BG313600 Rh2CG291800 Rh2DG329500
rosa_wichuraiana Rw2G024500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 2 cut(s) 27, 186
AciI CCGC 5 cut(s) 22, 25, 33, 159, 229
AclWI GGATC 3 cut(s) 721, 1114, 1140
AcsI RAATTY 2 cut(s) 215, 246
AcvI CACGTG 1 cut(s) 148
AdeI CACNNNGTG 2 cut(s) 869, 1001
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 1 cut(s) 626
AgeI ACCGGT 1 cut(s) 929
AgsI TTSAA 6 cut(s) 365, 911, 959, 1174, 1211, 1232
AjnI CCWGG 1 cut(s) 733
AluBI AGCT 6 cut(s) 266, 431, 623, 635, 1022, 1046
AluI AGCT 6 cut(s) 266, 431, 623, 635, 1022, 1046
Alw21I GWGCWC 1 cut(s) 995
Alw26I GTCTC 4 cut(s) 99, 420, 551, 1195
Alw44I GTGCAC 1 cut(s) 991
AlwI GGATC 3 cut(s) 721, 1114, 1140
AoxI GGCC 2 cut(s) 472, 855
ApaLI GTGCAC 1 cut(s) 991
ApeKI GCWGC 2 cut(s) 719, 890
ApoI RAATTY 2 cut(s) 215, 246
AseI ATTAAT 1 cut(s) 396
AsiGI ACCGGT 1 cut(s) 929
Asp700I GAANNNNTTC 3 cut(s) 47, 216, 454
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 371, 472
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 365, 561
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 995
BanII GRGCYC 3 cut(s) 155, 192, 776
BauI CACGAG 1 cut(s) 417
BbrPI CACGTG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 995
BbvI GCAGC 2 cut(s) 706, 877
BccI CCATC 6 cut(s) 127, 215, 527, 592, 931, 1004
BceAI ACGGC 3 cut(s) 20, 53, 161
BciT130I CCWGG 1 cut(s) 735
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 4 cut(s) 99, 420, 551, 1195
BfaI CTAG 2 cut(s) 90, 321
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 3 cut(s) 25, 720, 891
BlsI GCNGC 3 cut(s) 26, 721, 892
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 2 cut(s) 156, 735
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 371, 472
BmiI GGNNCC 6 cut(s) 109, 175, 451, 775, 808, 1051
BmrFI CCNGG 2 cut(s) 156, 735
BmsI GCATC 2 cut(s) 892, 1204
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 756, 760
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 1177
BpuMI CCSGG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 148
BsaI GGTCTC 2 cut(s) 99, 420
BsaJI CCNNGG 5 cut(s) 154, 516, 810, 963, 1261
BsaWI WCCGGW 2 cut(s) 104, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 355, 572, 777
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 735
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 5 cut(s) 154, 516, 810, 963, 1261
BseGI GGATG 5 cut(s) 603, 686, 835, 844, 942
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 594, 714
BseNI ACTGG 3 cut(s) 355, 572, 777
BseRI GAGGAG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 995
BseXI GCAGC 2 cut(s) 706, 877
Bsh1236I CGCG 2 cut(s) 27, 186
BshFI GGCC 2 cut(s) 474, 857
BshTI ACCGGT 1 cut(s) 929
BshVI ATCGAT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 995
BsiSI CCGG 4 cut(s) 105, 114, 156, 930
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 4 cut(s) 99, 420, 551, 1195
BsmBI CGTCTC 1 cut(s) 551
BsnI GGCC 2 cut(s) 474, 857
Bso31I GGTCTC 2 cut(s) 99, 420
Bsp1286I GDGCHC 4 cut(s) 155, 192, 776, 995
Bsp143I GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 5 cut(s) 22, 25, 33, 159, 229
BspANI GGCC 2 cut(s) 474, 857
BspCNI CTCAG 2 cut(s) 595, 715
BspDI ATCGAT 1 cut(s) 131
BspFNI CGCG 2 cut(s) 27, 186
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 6 cut(s) 109, 175, 451, 775, 808, 1051
BspPI GGATC 3 cut(s) 721, 1114, 1140
BspQI GCTCTTC 1 cut(s) 1114
BspTNI GGTCTC 2 cut(s) 99, 420
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 929
BsrI ACTGG 3 cut(s) 355, 572, 777
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 5 cut(s) 154, 516, 810, 963, 1261
BssMI GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 516, 963
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 2 cut(s) 315, 611
Bst6I CTCTTC 2 cut(s) 53, 1114
BstAPI GCANNNNNTGC 1 cut(s) 704
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 4 cut(s) 468, 603, 723, 998
BstF5I GGATG 5 cut(s) 603, 686, 835, 844, 942
BstFNI CGCG 2 cut(s) 27, 186
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 9 cut(s) 289, 385, 393, 484, 729, 792, 1109, 1135, 1237
BstMAI GTCTC 4 cut(s) 99, 420, 551, 1195
BstMBI GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
BstMWI GCNNNNNNNGC 6 cut(s) 196, 704, 719, 806, 959, 1223
BstNI CCWGG 1 cut(s) 735
BstSCI CCNGG 2 cut(s) 154, 733
BstSLI GKGCMC 1 cut(s) 995
BstUI CGCG 2 cut(s) 27, 186
BstV1I GCAGC 2 cut(s) 706, 877
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 4 cut(s) 726, 1106, 1132, 1234
BstYI RGATCY 4 cut(s) 726, 1106, 1132, 1234
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 2 cut(s) 474, 857
BsuTUI ATCGAT 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 5 cut(s) 603, 686, 835, 844, 942
BtsI GCAGTG 1 cut(s) 995
BtsIMutI CAGTG 2 cut(s) 579, 995
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 188
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 2 cut(s) 371, 472
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 1 cut(s) 607
CspAI ACCGGT 1 cut(s) 929
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 9 cut(s) 166, 293, 341, 368, 476, 560, 626, 716, 985
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 4 cut(s) 468, 603, 723, 998
DpnI GATC 9 cut(s) 288, 384, 392, 483, 728, 791, 1108, 1134, 1236
DpnII GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
DraIII CACNNNGTG 2 cut(s) 869, 1001
Eam1104I CTCTTC 2 cut(s) 53, 1114
EarI CTCTTC 2 cut(s) 53, 1114
EciI GGCGGA 3 cut(s) 11, 22, 174
Eco130I CCWWGG 2 cut(s) 516, 963
Eco24I GRGCYC 3 cut(s) 155, 192, 776
Eco31I GGTCTC 2 cut(s) 99, 420
Eco32I GATATC 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 371
Eco72I CACGTG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 516, 963
EcoT38I GRGCYC 3 cut(s) 155, 192, 776
ErhI CCWWGG 2 cut(s) 516, 963
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 9 cut(s) 169, 296, 344, 371, 479, 563, 629, 719, 988
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 9 cut(s) 165, 292, 340, 367, 475, 559, 625, 715, 984
FauI CCCGC 1 cut(s) 236
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 25, 720, 891
FokI GGATG 5 cut(s) 610, 693, 842, 851, 949
FriOI GRGCYC 3 cut(s) 155, 192, 776
Fsp4HI GCNGC 3 cut(s) 25, 720, 891
FspBI CTAG 2 cut(s) 90, 321
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 25, 720, 891
GsuI CTGGAG 2 cut(s) 756, 760
HaeIII GGCC 2 cut(s) 474, 857
HapII CCGG 4 cut(s) 105, 114, 156, 930
HhaI GCGC 1 cut(s) 29
Hin1II CATG 9 cut(s) 169, 296, 344, 371, 479, 563, 629, 719, 988
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 264
HpaII CCGG 4 cut(s) 105, 114, 156, 930
HphI GGTGA 2 cut(s) 365, 561
Hpy166II GTNNAC 2 cut(s) 374, 993
Hpy188I TCNGA 4 cut(s) 15, 286, 664, 814
Hpy188III TCNNGA 5 cut(s) 185, 341, 836, 1232, 1255
Hpy8I GTNNAC 2 cut(s) 374, 993
HpyAV CCTTC 2 cut(s) 847, 1238
HpyCH4III ACNGT 2 cut(s) 315, 611
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 749, 787, 988, 993, 1217
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 704, 719, 806, 959, 1223
HpyF3I CTNAG 4 cut(s) 468, 603, 723, 998
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 9 cut(s) 169, 296, 344, 371, 479, 563, 629, 719, 988
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
LguI GCTCTTC 1 cut(s) 1114
LmnI GCTCC 7 cut(s) 16, 107, 173, 428, 640, 779, 806
Lsp1109I GCAGC 2 cut(s) 706, 877
LweI GCATC 2 cut(s) 892, 1204
MaeI CTAG 2 cut(s) 90, 321
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 613
MalI GATC 9 cut(s) 288, 384, 392, 483, 728, 791, 1108, 1134, 1236
MboI GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
MboII GAAGA 8 cut(s) 40, 224, 281, 503, 911, 1127, 1131, 1223
MflI RGATCY 4 cut(s) 726, 1106, 1132, 1234
MhlI GDGCHC 4 cut(s) 155, 192, 776, 995
MluCI AATT 6 cut(s) 215, 246, 759, 845, 1062, 1151
MlyI GAGTC 4 cut(s) 57, 656, 1029, 1169
MmeI TCCRAC 2 cut(s) 406, 1036
MroXI GAANNNNTTC 3 cut(s) 47, 216, 454
MseI TTAA 3 cut(s) 39, 56, 396
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 4 cut(s) 105, 114, 156, 930
MspR9I CCNGG 2 cut(s) 156, 735
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 2 cut(s) 27, 186
MwoI GCNNNNNNNGC 6 cut(s) 196, 704, 719, 806, 959, 1223
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 700
NdeII GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
NlaIII CATG 9 cut(s) 169, 296, 344, 371, 479, 563, 629, 719, 988
NlaIV GGNNCC 6 cut(s) 109, 175, 451, 775, 808, 1051
NruI TCGCGA 1 cut(s) 186
PagI TCATGA 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 1114
PcsI WCGNNNNNNNCGW 1 cut(s) 1081
PdmI GAANNNNTTC 3 cut(s) 47, 216, 454
PfeI GAWTC 6 cut(s) 16, 122, 162, 566, 665, 740
PflMI CCANNNNNTGG 1 cut(s) 626
PfoI TCCNGGA 1 cut(s) 733
PinAI ACCGGT 1 cut(s) 929
PkrI GCNGC 3 cut(s) 26, 721, 892
PleI GAGTC 4 cut(s) 57, 655, 1029, 1168
PmaCI CACGTG 1 cut(s) 148
PmlI CACGTG 1 cut(s) 148
PpsI GAGTC 4 cut(s) 57, 655, 1029, 1168
Ppu21I YACGTR 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 733
PspCI CACGTG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 6 cut(s) 109, 175, 451, 775, 808, 1051
PspPI GGNCC 2 cut(s) 371, 472
PsuI RGATCY 4 cut(s) 726, 1106, 1132, 1234
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 1114
SaqAI TTAA 3 cut(s) 39, 56, 396
SatI GCNGC 3 cut(s) 25, 720, 891
Sau3AI GATC 9 cut(s) 286, 382, 390, 481, 726, 789, 1106, 1132, 1234
Sau96I GGNCC 2 cut(s) 371, 472
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 4 cut(s) 57, 656, 1029, 1169
ScrFI CCNGG 2 cut(s) 156, 735
SduI GDGCHC 4 cut(s) 155, 192, 776, 995
SfaNI GCATC 2 cut(s) 892, 1204
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 1192
SmoI CTYRAG 1 cut(s) 1192
Sse9I AATT 6 cut(s) 215, 246, 759, 845, 1062, 1151
SsiI CCGC 5 cut(s) 22, 25, 33, 159, 229
SspMI CTAG 2 cut(s) 90, 321
StyD4I CCNGG 2 cut(s) 154, 733
StyI CCWWGG 2 cut(s) 516, 963
TaaI ACNGT 2 cut(s) 315, 611
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 131, 210, 1075
TasI AATT 6 cut(s) 215, 246, 759, 845, 1062, 1151
TatI WGTACW 1 cut(s) 606
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 6 cut(s) 16, 122, 162, 566, 665, 740
Tru1I TTAA 3 cut(s) 39, 56, 396
Tru9I TTAA 3 cut(s) 39, 56, 396
TscAI CASTG 2 cut(s) 579, 995
TseI GCWGC 2 cut(s) 719, 890
TspDTI ATGAA 7 cut(s) 154, 209, 258, 281, 314, 424, 973
TspGWI ACGGA 2 cut(s) 719, 1042
TspRI CASTG 2 cut(s) 579, 995
Van91I CCANNNNNTGG 1 cut(s) 626
VneI GTGCAC 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 371
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 2 cut(s) 215, 246
XmnI GAANNNNTTC 3 cut(s) 47, 216, 454
XspI CTAG 2 cut(s) 90, 321
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.