Prupe.4G281800_v2.0.a1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010272
Physical Location & Seq
Reverse (-)
23993257 .. 23999486
6230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G281800.1

Sequence Viewer

Length: 1335 bp
ATGATGATCCGCAGTGCCATCGCCAAAAGACTTGTCTCCTCAAACTCCTCCTCCTCCTCGTCTACTTCTTCCTCTGGTTGGTCTTGGTTGTGCCAAAAGACTAGCAGCAGCAGATCATCGTCGTCGTTGGTGGGTCAATGCCTAAACGACGACGACAACAACAACAAGAAGCTTGAATTTGAATTTGATGGCATTGGGAAGACGAGTAAGAGTAGCAGCAGCAGGTGGTTTCACTCTGCCTCACTGGGTGGTGGTGGGGGGTTGCCTTCTTCCATGAGGGCAGCTGTCTTCAGGGAACCTAACAAACCTCTCACCATCGAGGAATTTCACATCCCTCGCCCCAAATCCGGTGAAATTCTCCTCAAAACCAAGGCCTGTGGAGTTTGCCACTCTGATCTCCATGTTATGAAAGGTGAGCTTCCATTTGCTAGCCCTTGTGTCGTGGGGCATGAGATAACTGGTGAGGTTGTCGAACATGGACCGGCTACAGATACCAAAACAATAGCAAGATTACCAATTGGATCTCGTGTTATTGGAGCTTTCATCATGCCTTGTGGTAACTGTTCCTACTGTTCAAAGGGCCATGATGATTTATGTGAGGATTTCTTTGCCTATAACCGTGCAAAAGGGACCCTTTATGATGGTGAGACTCGGCTATTCCTCCACAGCAGTGGAAAACCAGTATACATGTATAGTATGGGAGGCCTTGCTGAGTACTGTGTTGTGCCGGCAAATGGATTGACTATTCTGCCGAAGTCATTGCCATACACAGAGTCTGCAATTTTAGGATGTGCAGTATTTACTGCTTATGGTGCTATGGCTAATGCAGCTGAGGTGCGTCCTGGGGATTCAATTGCTGTGATTGGAATTGGGGGTGTTGGATCAAGCTGTTTGCAGATAGCAAGAGCGTTTGGTGCCTCTGATATTATTGCTGTGGATGTTCAAGATGAGAAACTGCAGAAAGCCAAGATATTTGGTGCTACTCATGCAATAAATGCGGCTAAAGAAGATGCTGTTGGCAAAATAATGACTTTTTTGCAATGTGTACAAAGTGTGAAAGATGGAGGAAAAGCTGTAATGATTGGGCTTGCACAAAGTGGTTCAGTTGGGGAAGTAGATATAAATCGTCTTGTTCGTAGAAAGATACAAATCATTGGATCTTATGGAGGAAGGGCAAGGCAGGATCTTCCTAAGGTTGTGAGGTTGGCAGAAACAGGTGTATTTGATTTAACTAATGCTGTTTCTAGAAAGTACACATTCGAGGAATCGAACGATGCGTTCCAGGATTTGAACAAGGGAAACATTGTTGGCCGAGCAGTGATTGAGATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

445

Amino Acids

47.26

Weight (kDa)

8.47

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63620 AT5G63620 AT5G63620
fragaria_vesca FvH4_1g25480 FvH4_1g25480 FvH4_1g25480 FvH4_1g25480
malus_domestica MD00G1129200.v1.1
prunus_persica Prupe.4G281800_v2.0.a1
pyrus_communis pycom520g00640
rosa_chinensis RchiOBHm_Chr2g0123611
rosa_laevigata RLG00000018760
rosa_multiflora Rmu_sc0005477.1_g000001 Rmu_ssc0000091.1_g000016
rosa_roxburghii Rroxscaffold_2G00120540
rosa_rugosa Rorug02G0246400
rosa_samantha Rh2AG305700 Rh2BG313600 Rh2CG291800 Rh2DG329500
rosa_wichuraiana Rw2G024500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 914
AccI GTMKAC 2 cut(s) 62, 684
AciI CCGC 2 cut(s) 10, 998
AclWI GGATC 4 cut(s) 529, 889, 1165, 1191
AcoI YGGCCR 1 cut(s) 1309
AcsI RAATTY 4 cut(s) 176, 182, 323, 354
AcuI CTGAAG 1 cut(s) 274
AdeI CACNNNGTG 2 cut(s) 248, 1097
AfaI GTAC 3 cut(s) 716, 1047, 1253
AfiI CCNNNNNNNGG 3 cut(s) 78, 347, 734
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 6 cut(s) 176, 182, 576, 852, 944, 1291
AjnI CCWGG 2 cut(s) 841, 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 999, 1031
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 7 cut(s) 172, 284, 418, 539, 830, 888, 1073
AluI AGCT 7 cut(s) 172, 284, 418, 539, 830, 888, 1073
Alw26I GTCTC 2 cut(s) 40, 641
AlwI GGATC 4 cut(s) 529, 889, 1165, 1191
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 4 cut(s) 372, 580, 703, 1309
ApeKI GCWGC 6 cut(s) 105, 108, 216, 219, 281, 827
ApoI RAATTY 4 cut(s) 176, 182, 323, 354
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspS9I GGNCC 3 cut(s) 479, 580, 630
AsuHPI GGTGA 5 cut(s) 304, 362, 425, 473, 656
AsuNHI GCTAGC 1 cut(s) 428
AvaII GGWCC 2 cut(s) 479, 630
AxyI CCTNAGG 1 cut(s) 1191
BanI GGYRCC 1 cut(s) 914
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 2 cut(s) 206, 280
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 6 cut(s) 117, 120, 228, 231, 293, 839
BccI CCATC 5 cut(s) 26, 182, 323, 635, 1055
BcgI CGANNNNNNTGC 3 cut(s) 35, 742, 776
BciT130I CCWGG 2 cut(s) 843, 1283
BcoDI GTCTC 2 cut(s) 40, 641
BfaI CTAG 3 cut(s) 102, 429, 1245
BfmI CTRYAG 2 cut(s) 486, 956
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 7 cut(s) 106, 109, 217, 220, 282, 828, 999
BlsI GCNGC 7 cut(s) 107, 110, 218, 221, 283, 829, 1000
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 2 cut(s) 843, 1283
Bme18I GGWCC 2 cut(s) 479, 630
BmgT120I GGNCC 3 cut(s) 479, 580, 630
BmiI GGNNCC 4 cut(s) 297, 631, 632, 916
BmrFI CCNGG 2 cut(s) 843, 1283
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 1000, 1264
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 206, 280
Bpu10I CCTNAGC 1 cut(s) 831
BsaBI GATNNNNATC 2 cut(s) 1122, 1148
BsaJI CCNNGG 2 cut(s) 369, 842
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 347, 734
Bse118I RCCGGY 2 cut(s) 481, 727
Bse1I ACTGG 3 cut(s) 249, 463, 680
Bse21I CCTNAGG 1 cut(s) 1191
Bse3DI GCAATG 2 cut(s) 758, 1046
Bse8I GATNNNNATC 2 cut(s) 1122, 1148
BseBI CCWGG 2 cut(s) 843, 1283
BseDI CCNNGG 2 cut(s) 369, 842
BseGI GGATG 3 cut(s) 330, 794, 943
BseJI GATNNNNATC 2 cut(s) 1122, 1148
BseLI CCNNNNNNNGG 3 cut(s) 78, 347, 734
BseMI GCAATG 2 cut(s) 758, 1046
BseMII CTCAG 2 cut(s) 702, 822
BseNI ACTGG 3 cut(s) 249, 463, 680
BseRI GAGGAG 6 cut(s) 28, 37, 40, 43, 46, 350
BseXI GCAGC 6 cut(s) 117, 120, 228, 231, 293, 839
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 4 cut(s) 374, 582, 705, 1311
BshNI GGYRCC 1 cut(s) 914
BsiSI CCGG 3 cut(s) 348, 482, 728
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 78, 347, 734
BsmAI GTCTC 2 cut(s) 40, 641
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 4 cut(s) 374, 582, 705, 1311
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
BspACI CCGC 2 cut(s) 10, 998
BspANI GGCC 4 cut(s) 374, 582, 705, 1311
BspCNI CTCAG 2 cut(s) 703, 823
BspLI GGNNCC 4 cut(s) 297, 631, 632, 916
BspMAI CTGCAG 1 cut(s) 960
BspMI ACCTGC 1 cut(s) 213
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 4 cut(s) 529, 889, 1165, 1191
BspT107I GGYRCC 1 cut(s) 914
BsrDI GCAATG 2 cut(s) 758, 1046
BsrFI RCCGGY 2 cut(s) 481, 727
BsrGI TGTACA 1 cut(s) 1045
BsrI ACTGG 3 cut(s) 249, 463, 680
BssAI RCCGGY 2 cut(s) 481, 727
BssECI CCNNGG 2 cut(s) 369, 842
BssMI GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
BssNAI GTATAC 1 cut(s) 685
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 369
Bst1107I GTATAC 1 cut(s) 685
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 843, 1283
Bst4CI ACNGT 4 cut(s) 563, 572, 620, 719
BstAPI GCANNNNNTGC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 430, 729, 1089
BstDEI CTNAG 3 cut(s) 711, 831, 1191
BstF5I GGATG 3 cut(s) 330, 794, 943
BstKTI GATC 7 cut(s) 9, 116, 397, 524, 884, 1160, 1186
BstMAI GTCTC 2 cut(s) 40, 641
BstMBI GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 812, 827, 914, 986, 995
BstNI CCWGG 2 cut(s) 843, 1283
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 841, 1281
BstSFI CTRYAG 2 cut(s) 486, 956
BstV1I GCAGC 6 cut(s) 117, 120, 228, 231, 293, 839
BstV2I GAAGAC 2 cut(s) 206, 280
BstX2I RGATCY 3 cut(s) 521, 1157, 1183
BstXI CCANNNNNNTGG 1 cut(s) 671
BstYI RGATCY 3 cut(s) 521, 1157, 1183
BstZ17I GTATAC 1 cut(s) 685
Bsu36I CCTNAGG 1 cut(s) 1191
BsuRI GGCC 4 cut(s) 374, 582, 705, 1311
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 3 cut(s) 330, 794, 943
BtsI GCAGTG 3 cut(s) 19, 676, 1323
BtsIMutI CAGTG 4 cut(s) 19, 242, 676, 1323
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 430, 729, 1089
CaiI CAGNNNCTG 1 cut(s) 776
Cfr10I RCCGGY 2 cut(s) 481, 727
Cfr13I GGNCC 3 cut(s) 479, 580, 630
CseI GACGC 1 cut(s) 827
Csp6I GTAC 3 cut(s) 715, 1046, 1252
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 8 cut(s) 274, 401, 449, 476, 547, 584, 688, 986
CviQI GTAC 3 cut(s) 715, 1046, 1252
DdeI CTNAG 3 cut(s) 711, 831, 1191
DpnI GATC 7 cut(s) 8, 115, 396, 523, 883, 1159, 1185
DpnII GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
DraIII CACNNNGTG 2 cut(s) 248, 1097
EaeI YGGCCR 1 cut(s) 1309
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 2 cut(s) 374, 705
Eco47I GGWCC 2 cut(s) 479, 630
Eco57I CTGAAG 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 1191
EcoO109I RGGNCCY 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 841, 1281
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 8 cut(s) 277, 404, 452, 479, 550, 587, 691, 989
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 618, 650
FaqI GGGAC 1 cut(s) 643
FatI CATG 8 cut(s) 273, 400, 448, 475, 546, 583, 687, 985
FblI GTMKAC 2 cut(s) 62, 684
Fnu4HI GCNGC 7 cut(s) 106, 109, 217, 220, 282, 828, 999
FokI GGATG 3 cut(s) 317, 801, 950
Fsp4HI GCNGC 7 cut(s) 106, 109, 217, 220, 282, 828, 999
FspBI CTAG 3 cut(s) 102, 429, 1245
GluI GCNGC 7 cut(s) 106, 109, 217, 220, 282, 828, 999
HaeIII GGCC 4 cut(s) 374, 582, 705, 1311
HapII CCGG 3 cut(s) 348, 482, 728
HgaI GACGC 1 cut(s) 827
Hin1II CATG 8 cut(s) 277, 404, 452, 479, 550, 587, 691, 989
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 4 cut(s) 649, 773, 848, 1265
HpaII CCGG 3 cut(s) 348, 482, 728
HphI GGTGA 5 cut(s) 304, 362, 425, 473, 656
Hpy166II GTNNAC 4 cut(s) 63, 685, 1046, 1254
Hpy188I TCNGA 2 cut(s) 394, 922
Hpy188III TCNNGA 2 cut(s) 944, 1245
Hpy8I GTNNAC 4 cut(s) 63, 685, 1046, 1254
Hpy99I CGWCG 4 cut(s) 124, 127, 152, 155
HpyAV CCTTC 2 cut(s) 276, 1164
HpyCH4III ACNGT 4 cut(s) 563, 572, 620, 719
HpyCH4V TGCA 9 cut(s) 623, 779, 794, 827, 895, 958, 989, 1039, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 812, 827, 914, 986, 995
HpyF3I CTNAG 3 cut(s) 711, 831, 1191
Hsp92II CATG 8 cut(s) 277, 404, 452, 479, 550, 587, 691, 989
KflI GGGWCCC 1 cut(s) 630
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
LmnI GCTCC 1 cut(s) 536
Lsp1109I GCAGC 6 cut(s) 117, 120, 228, 231, 293, 839
LweI GCATC 2 cut(s) 1000, 1264
MaeI CTAG 3 cut(s) 102, 429, 1245
MaeIII GTNAC 1 cut(s) 557
MalI GATC 7 cut(s) 8, 115, 396, 523, 883, 1159, 1185
MboI GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
MboII GAAGA 6 cut(s) 60, 211, 261, 280, 1019, 1178
MfeI CAATTG 2 cut(s) 516, 852
MflI RGATCY 3 cut(s) 521, 1157, 1183
MluCI AATT 8 cut(s) 176, 182, 323, 354, 516, 780, 852, 867
MlyI GAGTC 2 cut(s) 643, 782
MmeI TCCRAC 1 cut(s) 859
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 1 cut(s) 1229
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 2 cut(s) 284, 830
MspI CCGG 3 cut(s) 348, 482, 728
MspR9I CCNGG 2 cut(s) 843, 1283
MunI CAATTG 2 cut(s) 516, 852
MvaI CCWGG 2 cut(s) 843, 1283
MwoI GCNNNNNNNGC 5 cut(s) 812, 827, 914, 986, 995
NaeI GCCGGC 1 cut(s) 729
NdeII GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
NgoMIV GCCGGC 1 cut(s) 727
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 8 cut(s) 277, 404, 452, 479, 550, 587, 691, 989
NlaIV GGNNCC 4 cut(s) 297, 631, 632, 916
NmeAIII GCCGAG 1 cut(s) 631
NspI RCATGY 1 cut(s) 691
OliI CACNNNNGTG 1 cut(s) 669
PaqCI CACCTGC 1 cut(s) 213
PceI AGGCCT 2 cut(s) 374, 705
PciI ACATGT 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 1132, 1274
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 848, 1265
PfoI TCCNGGA 1 cut(s) 1281
PkrI GCNGC 7 cut(s) 107, 110, 218, 221, 283, 829, 1000
PleI GAGTC 2 cut(s) 643, 781
PpsI GAGTC 2 cut(s) 643, 781
PpuMI RGGWCCY 1 cut(s) 630
PscI ACATGT 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 2 cut(s) 841, 1281
PspGI CCWGG 2 cut(s) 841, 1281
PspN4I GGNNCC 4 cut(s) 297, 631, 632, 916
PspPI GGNCC 3 cut(s) 479, 580, 630
PspPPI RGGWCCY 1 cut(s) 630
PstI CTGCAG 1 cut(s) 960
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 3 cut(s) 521, 1157, 1183
PvuII CAGCTG 2 cut(s) 284, 830
RsaI GTAC 3 cut(s) 716, 1047, 1253
RsaNI GTAC 3 cut(s) 715, 1046, 1252
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 1 cut(s) 1229
SatI GCNGC 7 cut(s) 106, 109, 217, 220, 282, 828, 999
Sau3AI GATC 7 cut(s) 6, 113, 394, 521, 881, 1157, 1183
Sau96I GGNCC 3 cut(s) 479, 580, 630
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 2 cut(s) 643, 782
ScrFI CCNGG 2 cut(s) 843, 1283
SfaNI GCATC 2 cut(s) 1000, 1264
SfcI CTRYAG 2 cut(s) 486, 956
SinI GGWCC 2 cut(s) 479, 630
SmiMI CAYNNNNRTG 1 cut(s) 669
Sse9I AATT 8 cut(s) 176, 182, 323, 354, 516, 780, 852, 867
SseBI AGGCCT 2 cut(s) 374, 705
SsiI CCGC 2 cut(s) 10, 998
SspMI CTAG 3 cut(s) 102, 429, 1245
StuI AGGCCT 2 cut(s) 374, 705
StyD4I CCNGG 2 cut(s) 841, 1281
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 4 cut(s) 563, 572, 620, 719
TaqI TCGA 4 cut(s) 318, 471, 1260, 1268
TasI AATT 8 cut(s) 176, 182, 323, 354, 516, 780, 852, 867
TatI WGTACW 3 cut(s) 714, 1045, 1251
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 2 cut(s) 848, 1265
Tru1I TTAA 1 cut(s) 1229
Tru9I TTAA 1 cut(s) 1229
TscAI CASTG 4 cut(s) 19, 249, 676, 1323
TseI GCWGC 6 cut(s) 105, 108, 216, 219, 281, 827
TspDTI ATGAA 2 cut(s) 422, 532
TspRI CASTG 4 cut(s) 19, 249, 676, 1323
VpaK11BI GGWCC 2 cut(s) 479, 630
XapI RAATTY 4 cut(s) 176, 182, 323, 354
XbaI TCTAGA 1 cut(s) 1244
XceI RCATGY 1 cut(s) 691
XmiI GTMKAC 2 cut(s) 62, 684
XspI CTAG 3 cut(s) 102, 429, 1245
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.