Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007855

Physical Location & Seq

Genomic Coordinates Forward (+)

25784404 .. 25786385

Gene Structure 1982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGTCACAGAGTATTGGTTTATGTTGGAGCTCTGTTTCTGATTTTATTCACGATTTTTCCATCTTCTAGTGCTTTAATTTCGTCTCCTGATGCTAATCCTCCTTACCCTAAAGCTATCTCCGATTTGAAGGAATCAATTGTGAAGGGACTTGGATTCCAATCCGAGGAAGTCAAGGTTTCTGGGTTTGATATAAGGGATGCATTGGTAGGACATTCTGTTTCATACGAATTTGATTTAGAAATCGACAATAAAGTTCTCCCATTTAAGCTTCTTGAAGATGTGAACCGATGGGAATACGTTGATCTCCCAATTTTCCAAGTAGAACAACCCTCTGAGAATGGTTTGGTTCCTATGAGGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTTCTGGTCCTATGGAACTTTGGATCCAAGATGCTAATAATATGCGCCTTTCTTTACCATATGATGTGGATGCTGGTGTTTTGAAGAAAGTGATATTAGCAGATGGTGCTGTTGTAACAGTTAAAGGAGCTAGATCTGTTAGCTTGCGTCATCCCATTGATTTGCCACTTCCATTGAATCAGAGTTCCAATGAGTTTGCTTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCGACTGATCAAGAAAGTCCAGTTCTTTCGCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTTCACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAATTATCTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACCATTGGTGCCAACGCTATGACTACTGTTCTTACCCCAAGAGAGTTTACAACCATGTGGCCAATCACTTCAATCAATGGCTCAAATGCTAACTTACTTGGCTTTGAGAAACTATTGACCTCTGTTTTGGGTCCGAAAGCTCAGGAGAAAGGTTCCTTTAAGGTGTTAAAAGCGAAAGTCGCTGCTCAAACCTTTATGAAGATTGGTTTTGGCATAGAAAAGAAGCTCAAGGAAGCAGATGTTGAAGGTTTAAGCTTTCCAGAGTGGCGAACAAAGCCTGAGACAATGAGAATGCATTTTGAGGTTCTTGCTAAAGTTGATGGTGAGAATGTTATCCCGGAGAACGTAATGCGAGTTGATCCAATCCCACTGGAGGACACGATAGCGCAAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTGAGTCTCCTCCAAGCCCTTTTACCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

46.44

Weight (kDa)

5.78

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64510
fragaria_vesca	FvH4_2g02400 FvH4_2g02400 FvH4_2g02400 FvH4_2g02400 FvH4_2g02480 FvH4_2g02480
malus_domestica	MD02G1193100.v1.1 MD05G1112800.v1.1 MD10G1115400.v1.1 MD15G1348700.v1.1
prunus_persica	Prupe.8G157400_v2.0.a1
pyrus_communis	pycom10g09990
rosa_chinensis	RchiOBHm_Chr6g0246311
rosa_laevigata	RLG00000015264
rosa_multiflora	Rmu_sc0001066.1_g000010
rosa_roxburghii	Rroxscaffold_7G00214690
rosa_rugosa	Rorug05G0520200
rosa_samantha	Rh6AG034400 Rh6BG029500 Rh6CG029900 Rh6DG028800
rosa_wichuraiana	Rw6G002780 Rw6G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	3 cut(s)	430, 443, 1163
AcoI	YGGCCR	1 cut(s)	869
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	166, 1183
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	7 cut(s)	130, 278, 410, 496, 589, 882, 1055
AjiI	CACGTC	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	760
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	4 cut(s)	90, 809, 1085, 1254
AlwI	GGATC	3 cut(s)	430, 443, 1163
AoxI	GGCC	1 cut(s)	869
ApeKI	GCWGC	1 cut(s)	992
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	2 cut(s)	459, 1198
AspS9I	GGNCC	3 cut(s)	419, 695, 941
AsuC2I	CCSGG	1 cut(s)	1148
AsuHPI	GGTGA	1 cut(s)	1145
AvaII	GGWCC	3 cut(s)	419, 695, 941
BalI	TGGCCA	1 cut(s)	871
BamHI	GGATCC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	979
BccI	CCATC	4 cut(s)	70, 285, 509, 1124
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	1148
BcoDI	GTCTC	4 cut(s)	90, 809, 1085, 1254
BfaI	CTAG	3 cut(s)	69, 375, 543
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	1 cut(s)	993
BlsI	GCNGC	1 cut(s)	994
Bme1390I	CCNGG	2 cut(s)	762, 1148
Bme18I	GGWCC	3 cut(s)	419, 695, 941
BmgBI	CACGTC	1 cut(s)	647
BmgT120I	GGNCC	3 cut(s)	419, 695, 941
BmiI	GGNNCC	5 cut(s)	351, 437, 820, 942, 964
BmrFI	CCNGG	2 cut(s)	762, 1148
BmsI	GCATC	5 cut(s)	82, 190, 433, 472, 719
BoxI	GACNNNNGTC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	2 cut(s)	744, 1202
Bpu10I	CCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	2 cut(s)	725, 1022
BpuMI	CCSGG	1 cut(s)	1148
BsaBI	GATNNNNATC	2 cut(s)	96, 160
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 1183
Bse1I	ACTGG	3 cut(s)	671, 1185, 1216
Bse8I	GATNNNNATC	2 cut(s)	96, 160
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	205, 487, 562
BseJI	GATNNNNATC	2 cut(s)	96, 160
BseLI	CCNNNNNNNGG	2 cut(s)	166, 1183
BseMII	CTCAG	3 cut(s)	327, 965, 1080
BseNI	ACTGG	3 cut(s)	671, 1185, 1216
BseRI	GAGGAG	1 cut(s)	1242
BseXI	GCAGC	1 cut(s)	979
BshFI	GGCC	1 cut(s)	871
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	1148
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	166, 1183
BsmAI	GTCTC	4 cut(s)	90, 809, 1085, 1254
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	1107
BsnI	GGCC	1 cut(s)	871
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	304, 435, 545, 658, 1168
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	1 cut(s)	871
BspCNI	CTCAG	3 cut(s)	328, 964, 1081
BspLI	GGNNCC	5 cut(s)	351, 437, 820, 942, 964
BspPI	GGATC	3 cut(s)	430, 443, 1163
BspT107I	GGYRCC	1 cut(s)	818
BspTI	CTTAAG	1 cut(s)	746
BsrI	ACTGG	3 cut(s)	671, 1185, 1216
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	5 cut(s)	304, 435, 545, 658, 1168
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	2 cut(s)	532, 838
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	3 cut(s)	336, 951, 1089
BstF5I	GGATG	3 cut(s)	205, 487, 562
BstHHI	GCGC	2 cut(s)	459, 1198
BstKTI	GATC	5 cut(s)	307, 438, 548, 661, 1171
BstMAI	GTCTC	4 cut(s)	90, 809, 1085, 1254
BstMBI	GATC	5 cut(s)	304, 435, 545, 658, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 989, 1084
BstNI	CCWGG	1 cut(s)	762
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSCI	CCNGG	2 cut(s)	760, 1146
BstV1I	GCAGC	1 cut(s)	979
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	435, 545
BstYI	RGATCY	2 cut(s)	435, 545
BsuRI	GGCC	1 cut(s)	871
BtrI	CACGTC	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	205, 487, 562
BtsIMutI	CAGTG	1 cut(s)	1178
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	2 cut(s)	459, 1198
Cfr13I	GGNCC	3 cut(s)	419, 695, 941
CseI	GACGC	2 cut(s)	548, 740
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	3 cut(s)	784, 865, 1225
DdeI	CTNAG	3 cut(s)	336, 951, 1089
DpnI	GATC	5 cut(s)	306, 437, 547, 660, 1170
DpnII	GATC	5 cut(s)	304, 435, 545, 658, 1168
EaeI	YGGCCR	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	419, 695, 941
Eco53kI	GAGCTC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	760
EcoT22I	ATGCAT	2 cut(s)	205, 1107
EcoT38I	GRGCYC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	787, 868, 1228
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	783, 864, 1224
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	993
FokI	GGATG	3 cut(s)	212, 494, 549
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	993
FspBI	CTAG	3 cut(s)	69, 375, 543
GlaI	GCGC	2 cut(s)	458, 1197
GluI	GCNGC	1 cut(s)	993
GsuI	CTGGAG	2 cut(s)	744, 1202
HaeIII	GGCC	1 cut(s)	871
HapII	CCGG	1 cut(s)	1148
HgaI	GACGC	2 cut(s)	548, 740
HhaI	GCGC	2 cut(s)	459, 1198
Hin1II	CATG	3 cut(s)	787, 868, 1228
Hin6I	GCGC	2 cut(s)	457, 1196
HinP1I	GCGC	2 cut(s)	457, 1196
HindIII	AAGCTT	3 cut(s)	269, 743, 1063
HinfI	GANTC	5 cut(s)	134, 156, 589, 802, 1247
HpaII	CCGG	1 cut(s)	1148
HphI	GGTGA	1 cut(s)	1145
Hpy166II	GTNNAC	2 cut(s)	286, 858
Hpy188I	TCNGA	6 cut(s)	42, 124, 166, 337, 594, 945
Hpy188III	TCNNGA	8 cut(s)	52, 89, 275, 615, 662, 728, 953, 1070
Hpy8I	GTNNAC	2 cut(s)	286, 858
Hpy99I	CGWCG	1 cut(s)	648
HpyAV	CCTTC	3 cut(s)	124, 139, 1049
HpyCH4III	ACNGT	2 cut(s)	532, 838
HpyCH4IV	ACGT	3 cut(s)	300, 646, 1155
HpyCH4V	TGCA	3 cut(s)	203, 710, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 989, 1084
HpyF3I	CTNAG	3 cut(s)	336, 951, 1089
HpySE526I	ACGT	3 cut(s)	300, 646, 1155
Hsp92II	CATG	3 cut(s)	787, 868, 1228
HspAI	GCGC	2 cut(s)	457, 1196
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	304, 435, 545, 658, 1168
LmnI	GCTCC	5 cut(s)	29, 406, 539, 687, 763
Lsp1109I	GCAGC	1 cut(s)	979
LweI	GCATC	5 cut(s)	82, 190, 433, 472, 719
MaeI	CTAG	3 cut(s)	69, 375, 543
MaeII	ACGT	3 cut(s)	300, 646, 1155
MaeIII	GTNAC	4 cut(s)	5, 387, 526, 1219
MalI	GATC	5 cut(s)	306, 437, 547, 660, 1170
MboI	GATC	5 cut(s)	304, 435, 545, 658, 1168
MboII	GAAGA	6 cut(s)	57, 290, 379, 508, 771, 1021
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	435, 545
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	871
MluCI	AATT	5 cut(s)	78, 138, 230, 312, 773
MluNI	TGGCCA	1 cut(s)	871
MlyI	GAGTC	2 cut(s)	811, 1256
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	111, 160, 343, 351, 940, 1105, 1177, 1263
Mox20I	TGGCCA	1 cut(s)	871
Mph1103I	ATGCAT	2 cut(s)	205, 1107
MroXI	GAANNNNTTC	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	871
MseI	TTAA	7 cut(s)	77, 267, 534, 747, 969, 977, 1061
Msp20I	TGGCCA	1 cut(s)	871
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	1148
MspR9I	CCNGG	2 cut(s)	762, 1148
MunI	CAATTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	1107
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	518, 989, 1084
NciI	CCSGG	1 cut(s)	1148
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	5 cut(s)	304, 435, 545, 658, 1168
NlaIII	CATG	3 cut(s)	787, 868, 1228
NlaIV	GGNNCC	5 cut(s)	351, 437, 820, 942, 964
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	2 cut(s)	205, 1107
PctI	GAATGC	1 cut(s)	1107
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	134, 156, 589
PfoI	TCCNGGA	2 cut(s)	760, 1146
PkrI	GCNGC	1 cut(s)	994
PleI	GAGTC	2 cut(s)	810, 1255
PpsI	GAGTC	2 cut(s)	810, 1255
PshAI	GACNNNNGTC	1 cut(s)	622
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	5 cut(s)	351, 437, 820, 942, 964
PspPI	GGNCC	3 cut(s)	419, 695, 941
PsuI	RGATCY	2 cut(s)	435, 545
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	7 cut(s)	77, 267, 534, 747, 969, 977, 1061
SatI	GCNGC	1 cut(s)	993
Sau3AI	GATC	5 cut(s)	304, 435, 545, 658, 1168
Sau96I	GGNCC	3 cut(s)	419, 695, 941
SchI	GAGTC	2 cut(s)	811, 1256
ScrFI	CCNGG	2 cut(s)	762, 1148
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	5 cut(s)	82, 190, 433, 472, 719
SinI	GGWCC	3 cut(s)	419, 695, 941
SmlI	CTYRAG	3 cut(s)	740, 746, 1037
SmoI	CTYRAG	3 cut(s)	740, 746, 1037
Sse9I	AATT	5 cut(s)	78, 138, 230, 312, 773
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	3 cut(s)	69, 375, 543
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	760, 1146
TaaI	ACNGT	2 cut(s)	532, 838
TaiI	ACGT	3 cut(s)	303, 649, 1158
TaqI	TCGA	4 cut(s)	246, 643, 653, 1229
TasI	AATT	5 cut(s)	78, 138, 230, 312, 773
TfiI	GAWTC	3 cut(s)	134, 156, 589
Tru1I	TTAA	7 cut(s)	77, 267, 534, 747, 969, 977, 1061
Tru9I	TTAA	7 cut(s)	77, 267, 534, 747, 969, 977, 1061
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	992
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	213, 1022
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	1185
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	3 cut(s)	419, 695, 941
XapI	RAATTY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	69, 375, 543
Zsp2I	ATGCAT	2 cut(s)	205, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.