Rw6G002940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007855
Physical Location & Seq
Forward (+)
4776016 .. 4778333
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002940.1

Sequence Viewer

Length: 1230 bp
ATGGCTCTCCACACCCTGCTTTTGATCCTCTTAGCTCTTGCGCATTTTCAACCTTCTTCCTCTCTAATTTCGACCCCTAATTGGAACCCTCGCTACCCCAGCCCCAGAGCCATCTCCGATTTGAAGGAGGCGATAGTAAAGGGATTGGGATTCCAAGCCGACGATCTGAAGATATCGGGGTTTGATCTGAGGGACGCGCAGGTGGGGCATTCGGTGGCGTACGAGTTCGACGTGGAGGTAGATAAGAAGGTGCTTCCTTTCAAGCTTTTGGAGGACGTTGACCGCTGGGAGTACGTTGACCTGCCGGTGTTTCGGGTCGAGGATGAAAGCGGGTTGGTCCCGAAAGGCAAATTGGACGACGGGTTGCCGCCCGTTTTGGCTCCGTTTCAGTTGGCCGGGCCCATGGAGCTGTGGATTCAGGACGCTAAAGACATGAGGCTCTCGCTCCCACATGATGTGGATGCTGGAGTGTTGAAGAAGGTGGTTTTAGCAGAAGGGGCTGTGGTTACCGTGACAGGGGCTAGGTCGGTGAGCCTAAGGCACCCTCTCCAGCTCCCATTGCCATTGAATCGGACCAGCAGTGGTTTTGCTTCTGGGCTTGTGACCCTGGCTGAATGGCTACGCCATGCTTCTAGAACCGAATCAGCTCCGTTGCTGTCTCTCCGCATTGTTGGTCCAACCGCTCTTACAGCCCCTGCCTCAACCTCTCCCTCCATGAACAACAAACTCAAGCTTAAGCGGCTTGCTCCTGGCCTTGTGGAGTTGTCATCACTGGCTAAAACAAGGCCCATGTCTGTTGAGCTACAAAACCAAGAGACCACCATTTTAACTCCAAAATACTTCACAACTGTTTGGCCCCTTGCTTCTGTCAATGGGTCGAATGCCAACTTGCTGGCTTTTGAGTCACTGCTTTCGACTGTTCTTGGTCCCAAGGCAAACAAAAAAGGTTCCTTTAAATTGTTGAAGGCAGATGTGTCAGCGCAGACGTTCTTGAAGATTGGGTTTGGGGTGGAGAAGAAGGTGAAAGAAGGAGATGGGATAGACTGGACAGGTTTTCCAGCATGGAGGACAAAGCCGACGACTGTAAGGATGCATTTCGAGGTGCTTGCTAAGGTTGATGGCGATAAAATTGTGCCAGAGAGAGTGGTTCCAGTTAACCCTGCAATCTTGGAGGACACTATAGCACCTAATGTGCTGTCCGGGAATGTCTCCATGTCCAAGACCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

44.45

Weight (kDa)

8.81

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 190
Acc16I TGCGCA 1 cut(s) 42
Acc36I ACCTGC 2 cut(s) 190, 309
AccB1I GGYRCC 1 cut(s) 540
AccBSI CCGCTC 1 cut(s) 683
AccII CGCG 1 cut(s) 197
AciI CCGC 6 cut(s) 283, 330, 368, 664, 681, 739
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 2 cut(s) 221, 293
AfiI CCNNNNNNNGG 2 cut(s) 81, 516
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 7 cut(s) 50, 124, 262, 475, 568, 964, 994
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 606, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 7 cut(s) 35, 265, 409, 553, 647, 733, 802
AluI AGCT 7 cut(s) 35, 265, 409, 553, 647, 733, 802
Alw26I GTCTC 3 cut(s) 663, 809, 1213
AlwI GGATC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 5 cut(s) 393, 398, 751, 785, 854
ApaI GGGCCC 1 cut(s) 402
AspLEI GCGC 3 cut(s) 43, 199, 982
AspS9I GGNCC 8 cut(s) 337, 398, 399, 573, 674, 786, 855, 926
AsuC2I CCSGG 2 cut(s) 397, 1201
AsuHPI GGTGA 2 cut(s) 541, 1033
AvaII GGWCC 4 cut(s) 337, 573, 674, 926
AxyI CCTNAGG 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 402
BccI CCATC 3 cut(s) 119, 1028, 1112
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BciT130I CCWGG 2 cut(s) 608, 750
BcnI CCSGG 2 cut(s) 397, 1201
BcoDI GTCTC 3 cut(s) 663, 809, 1213
BfaI CTAG 2 cut(s) 522, 633
BfmI CTRYAG 1 cut(s) 1179
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 2 cut(s) 190, 309
BisI GCNGC 2 cut(s) 368, 740
BlsI GCNGC 2 cut(s) 369, 741
Bme1390I CCNGG 4 cut(s) 397, 608, 750, 1201
Bme18I GGWCC 4 cut(s) 337, 573, 674, 926
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 8 cut(s) 337, 398, 399, 573, 674, 786, 855, 926
BmiI GGNNCC 9 cut(s) 86, 339, 381, 400, 542, 857, 928, 949, 1149
BmrFI CCNGG 4 cut(s) 397, 608, 750, 1201
BmsI GCATC 2 cut(s) 451, 1080
BpmI CTGGAG 2 cut(s) 486, 533
Bpu10I CCTNAGC 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 2 cut(s) 397, 1201
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 3 cut(s) 402, 606, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 516
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 777, 1049, 1151
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 2 cut(s) 608, 750
BseDI CCNNGG 3 cut(s) 402, 606, 930
BseGI GGATG 3 cut(s) 328, 466, 1095
BseLI CCNNNNNNNGG 2 cut(s) 81, 516
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 3 cut(s) 777, 1049, 1151
BseSI GKGCMC 1 cut(s) 402
BseYI CCCAGC 2 cut(s) 98, 285
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 5 cut(s) 395, 400, 753, 787, 856
BshNI GGYRCC 1 cut(s) 540
BsiSI CCGG 3 cut(s) 305, 396, 1200
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 3 cut(s) 206, 323, 912
BslI CCNNNNNNNGG 2 cut(s) 81, 516
BsmAI GTCTC 3 cut(s) 663, 809, 1213
BsmFI GGGAC 3 cut(s) 206, 323, 912
BsmI GAATGC 2 cut(s) 208, 886
BsnI GGCC 5 cut(s) 395, 400, 753, 787, 856
Bso31I GGTCTC 1 cut(s) 809
Bsp120I GGGCCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 3 cut(s) 24, 163, 184
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 6 cut(s) 283, 330, 368, 664, 681, 739
BspANI GGCC 5 cut(s) 395, 400, 753, 787, 856
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 9 cut(s) 86, 339, 381, 400, 542, 857, 928, 949, 1149
BspMI ACCTGC 2 cut(s) 190, 309
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 540
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 809
BsrBI CCGCTC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 3 cut(s) 777, 1049, 1151
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 402, 606, 930
BssMI GATC 3 cut(s) 24, 163, 184
BssT1I CCWWGG 2 cut(s) 402, 930
Bst2UI CCWGG 2 cut(s) 608, 750
Bst4CI ACNGT 4 cut(s) 511, 850, 919, 1084
BstAFI CTTAAG 1 cut(s) 734
BstC8I GCNNGC 3 cut(s) 744, 894, 1107
BstDEI CTNAG 4 cut(s) 31, 188, 536, 1110
BstDSI CCRYGG 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 3 cut(s) 328, 466, 1095
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 3 cut(s) 43, 199, 982
BstKTI GATC 3 cut(s) 27, 166, 187
BstMAI GTCTC 3 cut(s) 663, 809, 1213
BstMBI GATC 3 cut(s) 24, 163, 184
BstMWI GCNNNNNNNGC 7 cut(s) 99, 205, 406, 497, 559, 689, 739
BstNI CCWGG 2 cut(s) 608, 750
BstPI GGTNACC 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 395, 606, 748, 1199
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 892
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 5 cut(s) 395, 400, 753, 787, 856
BtgI CCRYGG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 328, 466, 1095
BtsI GCAGTG 2 cut(s) 586, 905
BtsIMutI CAGTG 3 cut(s) 586, 770, 905
BveI ACCTGC 2 cut(s) 190, 309
Cac8I GCNNGC 3 cut(s) 744, 894, 1107
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 3 cut(s) 43, 199, 982
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 8 cut(s) 337, 398, 399, 573, 674, 786, 855, 926
CseI GACGC 2 cut(s) 203, 431
Csp6I GTAC 2 cut(s) 220, 292
CviAII CATG 8 cut(s) 403, 433, 452, 626, 715, 790, 1062, 1213
CviQI GTAC 2 cut(s) 220, 292
DdeI CTNAG 4 cut(s) 31, 188, 536, 1110
DpnI GATC 3 cut(s) 26, 165, 186
DpnII GATC 3 cut(s) 24, 163, 184
DraI TTTAAA 1 cut(s) 955
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 402, 930
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 174
Eco47I GGWCC 4 cut(s) 337, 573, 674, 926
Eco57I CTGAAG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 505
EcoO65I GGTNACC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 606, 748
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 402, 930
EcoT22I ATGCAT 1 cut(s) 1095
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 402, 930
FaeI CATG 8 cut(s) 406, 436, 455, 629, 718, 793, 1065, 1216
FaqI GGGAC 3 cut(s) 206, 323, 912
FatI CATG 8 cut(s) 402, 432, 451, 625, 714, 789, 1061, 1212
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 2 cut(s) 368, 740
FokI GGATG 3 cut(s) 335, 473, 1102
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 368, 740
FspBI CTAG 2 cut(s) 522, 633
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 3 cut(s) 42, 198, 981
GluI GCNGC 2 cut(s) 368, 740
GsaI CCCAGC 2 cut(s) 102, 289
GsuI CTGGAG 2 cut(s) 486, 533
HaeIII GGCC 5 cut(s) 395, 400, 753, 787, 856
HapII CCGG 3 cut(s) 305, 396, 1200
HgaI GACGC 2 cut(s) 203, 431
HhaI GCGC 3 cut(s) 43, 199, 982
Hin1II CATG 8 cut(s) 406, 436, 455, 629, 718, 793, 1065, 1216
Hin6I GCGC 3 cut(s) 41, 197, 980
HinP1I GCGC 3 cut(s) 41, 197, 980
HincII GTYRAC 3 cut(s) 280, 298, 1156
HindII GTYRAC 3 cut(s) 280, 298, 1156
HindIII AAGCTT 2 cut(s) 263, 731
HinfI GANTC 5 cut(s) 150, 415, 568, 641, 902
HpaI GTTAAC 1 cut(s) 1156
HpaII CCGG 3 cut(s) 305, 396, 1200
HphI GGTGA 2 cut(s) 541, 1033
Hpy166II GTNNAC 3 cut(s) 280, 298, 1156
Hpy188I TCNGA 4 cut(s) 118, 168, 189, 573
Hpy188III TCNNGA 4 cut(s) 340, 419, 633, 991
Hpy8I GTNNAC 3 cut(s) 280, 298, 1156
Hpy99I CGWCG 4 cut(s) 164, 233, 362, 1081
HpyAV CCTTC 8 cut(s) 63, 118, 241, 472, 488, 958, 1012, 1022
HpyCH4III ACNGT 4 cut(s) 511, 850, 919, 1084
HpyCH4IV ACGT 4 cut(s) 231, 276, 294, 986
HpyCH4V TGCA 2 cut(s) 1093, 1163
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 205, 406, 497, 559, 689, 739
HpyF3I CTNAG 4 cut(s) 31, 188, 536, 1110
HpySE526I ACGT 4 cut(s) 231, 276, 294, 986
Hsp92II CATG 8 cut(s) 406, 436, 455, 629, 718, 793, 1065, 1216
HspAI GCGC 3 cut(s) 41, 197, 980
KspAI GTTAAC 1 cut(s) 1156
Kzo9I GATC 3 cut(s) 24, 163, 184
LmnI GCTCC 6 cut(s) 385, 406, 450, 558, 652, 751
LweI GCATC 2 cut(s) 451, 1080
MaeI CTAG 2 cut(s) 522, 633
MaeII ACGT 4 cut(s) 231, 276, 294, 986
MaeIII GTNAC 4 cut(s) 505, 511, 601, 903
MalI GATC 3 cut(s) 26, 165, 186
MbiI CCGCTC 1 cut(s) 683
MboI GATC 3 cut(s) 24, 163, 184
MboII GAAGA 5 cut(s) 48, 181, 487, 1006, 1027
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 5 cut(s) 66, 79, 350, 956, 1128
MlyI GAGTC 1 cut(s) 911
MmeI TCCRAC 1 cut(s) 701
Mph1103I ATGCAT 1 cut(s) 1095
MseI TTAA 4 cut(s) 735, 827, 954, 1155
MspA1I CMGCKG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 3 cut(s) 305, 396, 1200
MspR9I CCNGG 4 cut(s) 397, 608, 750, 1201
Mva1269I GAATGC 2 cut(s) 208, 886
MvaI CCWGG 2 cut(s) 608, 750
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 7 cut(s) 99, 205, 406, 497, 559, 689, 739
NciI CCSGG 2 cut(s) 397, 1201
NcoI CCATGG 1 cut(s) 402
NdeII GATC 3 cut(s) 24, 163, 184
NlaIII CATG 8 cut(s) 406, 436, 455, 629, 718, 793, 1065, 1216
NlaIV GGNNCC 9 cut(s) 86, 339, 381, 400, 542, 857, 928, 949, 1149
NmuCI GTSAC 3 cut(s) 511, 601, 903
NsbI TGCGCA 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 1095
PaqCI CACCTGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 2 cut(s) 208, 886
PfeI GAWTC 4 cut(s) 150, 415, 568, 641
Pfl23II CGTACG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 1199
PkrI GCNGC 2 cut(s) 369, 741
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 606, 748
PspEI GGTNACC 1 cut(s) 505
PspFI CCCAGC 2 cut(s) 98, 285
PspGI CCWGG 2 cut(s) 606, 748
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 9 cut(s) 86, 339, 381, 400, 542, 857, 928, 949, 1149
PspOMI GGGCCC 1 cut(s) 398
PspPI GGNCC 8 cut(s) 337, 398, 399, 573, 674, 786, 855, 926
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PstNI CAGNNNCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 221, 293
RsaNI GTAC 2 cut(s) 220, 292
SaqAI TTAA 4 cut(s) 735, 827, 954, 1155
SatI GCNGC 2 cut(s) 368, 740
Sau3AI GATC 3 cut(s) 24, 163, 184
Sau96I GGNCC 8 cut(s) 337, 398, 399, 573, 674, 786, 855, 926
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 4 cut(s) 397, 608, 750, 1201
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 2 cut(s) 451, 1080
SfcI CTRYAG 1 cut(s) 1179
SinI GGWCC 4 cut(s) 337, 573, 674, 926
SmlI CTYRAG 2 cut(s) 728, 734
SmoI CTYRAG 2 cut(s) 728, 734
Sse9I AATT 5 cut(s) 66, 79, 350, 956, 1128
SsiI CCGC 6 cut(s) 283, 330, 368, 664, 681, 739
SspMI CTAG 2 cut(s) 522, 633
StyD4I CCNGG 4 cut(s) 395, 606, 748, 1199
StyI CCWWGG 2 cut(s) 402, 930
TaaI ACNGT 4 cut(s) 511, 850, 919, 1084
TaiI ACGT 4 cut(s) 234, 279, 297, 989
TaqI TCGA 6 cut(s) 71, 228, 318, 878, 914, 1098
TasI AATT 5 cut(s) 66, 79, 350, 956, 1128
TauI GCSGC 2 cut(s) 370, 742
TfiI GAWTC 4 cut(s) 150, 415, 568, 641
Tru1I TTAA 4 cut(s) 735, 827, 954, 1155
Tru9I TTAA 4 cut(s) 735, 827, 954, 1155
TscAI CASTG 3 cut(s) 586, 777, 912
TseFI GTSAC 3 cut(s) 511, 601, 903
Tsp45I GTSAC 3 cut(s) 511, 601, 903
TspDTI ATGAA 2 cut(s) 339, 731
TspGWI ACGGA 2 cut(s) 372, 639
TspRI CASTG 3 cut(s) 586, 777, 912
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 4 cut(s) 337, 573, 674, 926
XbaI TCTAGA 1 cut(s) 632
XspI CTAG 2 cut(s) 522, 633
Zsp2I ATGCAT 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.