Rh6AG034400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007855
Physical Location & Seq
Forward (+)
4340033 .. 4342583
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG034400.1

Sequence Viewer

Length: 1269 bp
ATGCAAATGGCTCTCCACACCCTGCTTTTGATCCTCTTTGCTCTTGTGCATTTTCAACCTTCTTCCTCTCTAATTTCGACCCCTAATTGGAACCCTCGCTACCCCAGCCCCAGAGCCATCTCCGATTTGAAGGAGGCGATAGTGAAGGGATTGGGATTCCAAGCGGACGATCTGAAGATATCGGGGTTTGATCTGAGGGACGCGCAGGTGGGGCATTCGGTGGCGTACGAGTTCGACGTGGAGGTCGATAAGAAGGTGCTTCCTTTCAAGCTTTTGGAGGACGTTGACCGCTGGGAGTACGTTGACCTGCCGGTATTTCGGGTCGAGGATGAAAACGGGTTGGTCCGGAAAGATAAATTGGACGACGGGTTGCCGCCCGTTTTGGCTCCGTTTCAGTTGGCGGGGCCCATGGAGCTGTGGATTCAGGACGCTAAAGACATGAGGCTCTCGCTCCCACATGATGTGGATGCTGGAGTGTTGAAGAAGGTGGTTTTAGCAGAAGGGGCTGTGGTTACTGTGACAGGCGCTAGGTCGGTGAGCCTAAGGCACCCTCTCCAGCTCCCATTGCCATTGAATCGGACCAGCAGTGGTTTTGCTTCTGGGCTTGTGACCCTGGCTGAATGGCTACGCCATGCTTCTAGAACCGAATCAGCTCCGTTGCTGTCTCTCCGCATTGTTGGTCCAACCGCTCTTACAGCCCCTGCCTCAACCTCTCCCTCCATGAACAACAAACTCAAGCTTAAGCGGCTTGCTCCTGGGCTTGTGGAGTTGTCATCACTGGCTAAAACAAGGCCCATGTCTGTTGAGCTACAAAACCAAGAGACCACCATTTTAACTCCAAAATACTTCACAACTGTTTGGCCCCTTGCTTCTGTCAATGGGTCGAATGCCAACTTGCTGGCTTTTGAGTCACTGCTTTCAACTGTTCTTGGTCCCAAGGCAAACAAAAAAGGTTCCTTTAAATTGTTGAAGGCAGATGTGTCAGCGCAGACGTTCTTGAAGATTGGGTTTGGGGTGGAGAAGAAGGTGAAAGAAGGAGATGGGATAGACTGGACAGGTTTTCCAGCATGGAGGACAAAGCCGACGACTGTAAGGATGCATTTCGAGGTGCTTGCTAAGGTTGATGGCGATAAAATTGTGCCAGAGAGAGTGGTTCCAGTTAACCCTGCAATCTTGGAGGACACTATAGCACCTAATGTGCTGTCCGGGAATGTCTCCATGTCCAAGACCCCCATAGTTCAACCTCCCCCTAATCCCTTAACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

46.08

Weight (kDa)

8.81

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
AasI GACNNNNNNGTC 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 196, 315
AccB1I GGYRCC 1 cut(s) 546
AccBSI CCGCTC 1 cut(s) 689
AccII CGCG 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 7 cut(s) 164, 289, 374, 401, 670, 687, 745
AclWI GGATC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 2 cut(s) 227, 299
AfiI CCNNNNNNNGG 1 cut(s) 87
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 9 cut(s) 56, 130, 268, 481, 574, 921, 970, 1000, 1241
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 612, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 6 cut(s) 271, 415, 559, 653, 739, 808
AluI AGCT 6 cut(s) 271, 415, 559, 653, 739, 808
Alw26I GTCTC 3 cut(s) 669, 815, 1219
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 3 cut(s) 404, 791, 860
ApaI GGGCCC 1 cut(s) 408
AspLEI GCGC 3 cut(s) 205, 527, 988
AspS9I GGNCC 8 cut(s) 343, 404, 405, 579, 680, 792, 861, 932
AsuC2I CCSGG 1 cut(s) 1207
AsuHPI GGTGA 2 cut(s) 547, 1039
AvaII GGWCC 4 cut(s) 343, 579, 680, 932
AxyI CCTNAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 546
BanII GRGCYC 1 cut(s) 408
BccI CCATC 3 cut(s) 125, 1034, 1118
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciT130I CCWGG 2 cut(s) 614, 756
BcnI CCSGG 1 cut(s) 1207
BcoDI GTCTC 3 cut(s) 669, 815, 1219
BfaI CTAG 2 cut(s) 528, 639
BfmI CTRYAG 1 cut(s) 1185
BfoI RGCGCY 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 2 cut(s) 196, 315
BisI GCNGC 2 cut(s) 374, 746
BlsI GCNGC 2 cut(s) 375, 747
Bme1390I CCNGG 3 cut(s) 614, 756, 1207
Bme18I GGWCC 4 cut(s) 343, 579, 680, 932
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 8 cut(s) 343, 404, 405, 579, 680, 792, 861, 932
BmiI GGNNCC 9 cut(s) 92, 387, 405, 406, 548, 863, 934, 955, 1155
BmrFI CCNGG 3 cut(s) 614, 756, 1207
BmsI GCATC 2 cut(s) 457, 1086
BpmI CTGGAG 2 cut(s) 492, 539
Bpu10I CCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 1 cut(s) 719
BpuMI CCSGG 1 cut(s) 1207
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 4 cut(s) 408, 612, 755, 936
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 783, 1055, 1157
Bse21I CCTNAGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 2 cut(s) 614, 756
BseDI CCNNGG 4 cut(s) 408, 612, 755, 936
BseGI GGATG 3 cut(s) 334, 472, 1101
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 783, 1055, 1157
BseSI GKGCMC 1 cut(s) 408
BseYI CCCAGC 2 cut(s) 104, 291
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 3 cut(s) 406, 793, 862
BshNI GGYRCC 1 cut(s) 546
BsiSI CCGG 3 cut(s) 311, 346, 1206
BsiWI CGTACG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 212, 918
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 3 cut(s) 669, 815, 1219
BsmFI GGGAC 2 cut(s) 212, 918
BsmI GAATGC 2 cut(s) 214, 892
BsnI GGCC 3 cut(s) 406, 793, 862
Bso31I GGTCTC 1 cut(s) 815
Bsp120I GGGCCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 30, 169, 190
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 7 cut(s) 164, 289, 374, 401, 670, 687, 745
BspANI GGCC 3 cut(s) 406, 793, 862
BspCNI CTCAG 1 cut(s) 186
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 9 cut(s) 92, 387, 405, 406, 548, 863, 934, 955, 1155
BspMI ACCTGC 2 cut(s) 196, 315
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 740
BspTNI GGTCTC 1 cut(s) 815
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 3 cut(s) 783, 1055, 1157
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 408, 612, 755, 936
BssMI GATC 3 cut(s) 30, 169, 190
BssT1I CCWWGG 2 cut(s) 408, 936
Bst2UI CCWGG 2 cut(s) 614, 756
Bst4CI ACNGT 4 cut(s) 517, 856, 925, 1090
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 3 cut(s) 750, 900, 1113
BstDEI CTNAG 3 cut(s) 194, 542, 1116
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 334, 472, 1101
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 3 cut(s) 205, 527, 988
BstKTI GATC 3 cut(s) 33, 172, 193
BstMAI GTCTC 3 cut(s) 669, 815, 1219
BstMBI GATC 3 cut(s) 30, 169, 190
BstMWI GCNNNNNNNGC 7 cut(s) 105, 211, 412, 503, 565, 695, 745
BstNI CCWGG 2 cut(s) 614, 756
BstSCI CCNGG 3 cut(s) 612, 754, 1205
BstSFI CTRYAG 1 cut(s) 1185
BstSLI GKGCMC 1 cut(s) 408
BstUI CGCG 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 542
BsuRI GGCC 3 cut(s) 406, 793, 862
BtgI CCRYGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 334, 472, 1101
BtsI GCAGTG 2 cut(s) 592, 911
BtsIMutI CAGTG 3 cut(s) 592, 776, 911
BveI ACCTGC 2 cut(s) 196, 315
Cac8I GCNNGC 3 cut(s) 750, 900, 1113
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 3 cut(s) 205, 527, 988
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 8 cut(s) 343, 404, 405, 579, 680, 792, 861, 932
CseI GACGC 2 cut(s) 209, 437
Csp6I GTAC 2 cut(s) 226, 298
CviAII CATG 8 cut(s) 409, 439, 458, 632, 721, 796, 1068, 1219
CviQI GTAC 2 cut(s) 226, 298
DdeI CTNAG 3 cut(s) 194, 542, 1116
DpnI GATC 3 cut(s) 32, 171, 192
DpnII GATC 3 cut(s) 30, 169, 190
DraI TTTAAA 1 cut(s) 961
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 408, 936
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 815
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 4 cut(s) 343, 579, 680, 932
Eco57I CTGAAG 1 cut(s) 194
Eco81I CCTNAGG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 612, 754
EcoRV GATATC 1 cut(s) 180
EcoT14I CCWWGG 2 cut(s) 408, 936
EcoT22I ATGCAT 1 cut(s) 1101
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 408, 936
FaeI CATG 8 cut(s) 412, 442, 461, 635, 724, 799, 1071, 1222
FaqI GGGAC 2 cut(s) 212, 918
FatI CATG 8 cut(s) 408, 438, 457, 631, 720, 795, 1067, 1218
FauI CCCGC 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 374, 746
FokI GGATG 3 cut(s) 341, 479, 1108
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 374, 746
FspBI CTAG 2 cut(s) 528, 639
GlaI GCGC 3 cut(s) 204, 526, 987
GluI GCNGC 2 cut(s) 374, 746
GsaI CCCAGC 2 cut(s) 108, 295
GsuI CTGGAG 2 cut(s) 492, 539
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 3 cut(s) 406, 793, 862
HapII CCGG 3 cut(s) 311, 346, 1206
HgaI GACGC 2 cut(s) 209, 437
HhaI GCGC 3 cut(s) 205, 527, 988
Hin1II CATG 8 cut(s) 412, 442, 461, 635, 724, 799, 1071, 1222
Hin6I GCGC 3 cut(s) 203, 525, 986
HinP1I GCGC 3 cut(s) 203, 525, 986
HincII GTYRAC 3 cut(s) 286, 304, 1162
HindII GTYRAC 3 cut(s) 286, 304, 1162
HindIII AAGCTT 2 cut(s) 269, 737
HinfI GANTC 5 cut(s) 156, 421, 574, 647, 908
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 3 cut(s) 311, 346, 1206
HphI GGTGA 2 cut(s) 547, 1039
Hpy166II GTNNAC 3 cut(s) 286, 304, 1162
Hpy188I TCNGA 4 cut(s) 124, 174, 195, 579
Hpy188III TCNNGA 4 cut(s) 346, 425, 639, 997
Hpy8I GTNNAC 3 cut(s) 286, 304, 1162
Hpy99I CGWCG 3 cut(s) 239, 368, 1087
HpyAV CCTTC 9 cut(s) 69, 124, 139, 247, 478, 494, 964, 1018, 1028
HpyCH4III ACNGT 4 cut(s) 517, 856, 925, 1090
HpyCH4IV ACGT 4 cut(s) 237, 282, 300, 992
HpyCH4V TGCA 4 cut(s) 4, 49, 1099, 1169
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 211, 412, 503, 565, 695, 745
HpyF3I CTNAG 3 cut(s) 194, 542, 1116
HpySE526I ACGT 4 cut(s) 237, 282, 300, 992
Hsp92II CATG 8 cut(s) 412, 442, 461, 635, 724, 799, 1071, 1222
HspAI GCGC 3 cut(s) 203, 525, 986
Kpn2I TCCGGA 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 1162
Kzo9I GATC 3 cut(s) 30, 169, 190
LmnI GCTCC 6 cut(s) 391, 412, 456, 564, 658, 757
LweI GCATC 2 cut(s) 457, 1086
MaeI CTAG 2 cut(s) 528, 639
MaeII ACGT 4 cut(s) 237, 282, 300, 992
MaeIII GTNAC 4 cut(s) 511, 517, 607, 909
MalI GATC 3 cut(s) 32, 171, 192
MbiI CCGCTC 1 cut(s) 689
MboI GATC 3 cut(s) 30, 169, 190
MboII GAAGA 5 cut(s) 54, 187, 493, 1012, 1033
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 5 cut(s) 72, 85, 356, 962, 1134
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 1 cut(s) 707
Mph1103I ATGCAT 1 cut(s) 1101
MroI TCCGGA 1 cut(s) 345
MseI TTAA 5 cut(s) 741, 833, 960, 1161, 1259
MspA1I CMGCKG 1 cut(s) 291
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 3 cut(s) 311, 346, 1206
MspR9I CCNGG 3 cut(s) 614, 756, 1207
Mva1269I GAATGC 2 cut(s) 214, 892
MvaI CCWGG 2 cut(s) 614, 756
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 7 cut(s) 105, 211, 412, 503, 565, 695, 745
NciI CCSGG 1 cut(s) 1207
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 30, 169, 190
NlaIII CATG 8 cut(s) 412, 442, 461, 635, 724, 799, 1071, 1222
NlaIV GGNNCC 9 cut(s) 92, 387, 405, 406, 548, 863, 934, 955, 1155
NmuCI GTSAC 3 cut(s) 517, 607, 909
NsiI ATGCAT 1 cut(s) 1101
PaqCI CACCTGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 243
PctI GAATGC 2 cut(s) 214, 892
PfeI GAWTC 4 cut(s) 156, 421, 574, 647
Pfl23II CGTACG 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 1205
PkrI GCNGC 2 cut(s) 375, 747
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
Psp6I CCWGG 2 cut(s) 612, 754
PspFI CCCAGC 2 cut(s) 104, 291
PspGI CCWGG 2 cut(s) 612, 754
PspLI CGTACG 1 cut(s) 225
PspN4I GGNNCC 9 cut(s) 92, 387, 405, 406, 548, 863, 934, 955, 1155
PspOMI GGGCCC 1 cut(s) 404
PspPI GGNCC 8 cut(s) 343, 404, 405, 579, 680, 792, 861, 932
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstNI CAGNNNCTG 1 cut(s) 701
RsaI GTAC 2 cut(s) 227, 299
RsaNI GTAC 2 cut(s) 226, 298
SaqAI TTAA 5 cut(s) 741, 833, 960, 1161, 1259
SatI GCNGC 2 cut(s) 374, 746
Sau3AI GATC 3 cut(s) 30, 169, 190
Sau96I GGNCC 8 cut(s) 343, 404, 405, 579, 680, 792, 861, 932
SchI GAGTC 1 cut(s) 917
ScrFI CCNGG 3 cut(s) 614, 756, 1207
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 2 cut(s) 457, 1086
SfcI CTRYAG 1 cut(s) 1185
SinI GGWCC 4 cut(s) 343, 579, 680, 932
SmlI CTYRAG 2 cut(s) 734, 740
SmoI CTYRAG 2 cut(s) 734, 740
Sse9I AATT 5 cut(s) 72, 85, 356, 962, 1134
SsiI CCGC 7 cut(s) 164, 289, 374, 401, 670, 687, 745
SspMI CTAG 2 cut(s) 528, 639
StyD4I CCNGG 3 cut(s) 612, 754, 1205
StyI CCWWGG 2 cut(s) 408, 936
TaaI ACNGT 4 cut(s) 517, 856, 925, 1090
TaiI ACGT 4 cut(s) 240, 285, 303, 995
TaqI TCGA 6 cut(s) 77, 234, 246, 324, 884, 1104
TasI AATT 5 cut(s) 72, 85, 356, 962, 1134
TauI GCSGC 2 cut(s) 376, 748
TfiI GAWTC 4 cut(s) 156, 421, 574, 647
Tru1I TTAA 5 cut(s) 741, 833, 960, 1161, 1259
Tru9I TTAA 5 cut(s) 741, 833, 960, 1161, 1259
TscAI CASTG 3 cut(s) 592, 783, 918
TseFI GTSAC 3 cut(s) 517, 607, 909
Tsp45I GTSAC 3 cut(s) 517, 607, 909
TspDTI ATGAA 2 cut(s) 345, 737
TspGWI ACGGA 2 cut(s) 378, 645
TspRI CASTG 3 cut(s) 592, 783, 918
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 4 cut(s) 343, 579, 680, 932
XbaI TCTAGA 1 cut(s) 638
XspI CTAG 2 cut(s) 528, 639
Zsp2I ATGCAT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.