Prupe.8G157400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007855
Physical Location & Seq
Reverse (-)
16779278 .. 16781609
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G157400.1

Sequence Viewer

Length: 1263 bp
ATGGCTCTCCAAGCTCTGTTTTTTATCCTCTTAACAACGCAGTTCCTACCATCTTCTTCTCTAATTTCCAAGCCCGATTTCCACTCTCGCTACCCGAGCCCCCGAGCCATCTCCGATTTGAAGGAGAGTATTGTGAAGGGATTAGGGTTTCCGGCGGAGGATTTGGAGGTGTCGGGGTTCGATTTGAGGGACGCGCAGGTGGGGCATTCGGTGGCGTACGAGTTCGACGTGGAGGTGGACAACAAGGTGCTTCCTTTCAAGCTCTTGGAGGACGTGGACCGCTGGGATTACGTCGATTTGCCGATTTTTCGGGTCGAGGACGAAAATGGGTTGGTCCAGAAAGGCAAATCGGGTACTGGGTTGCCGCCGGTTTTGGCTCCGTTTCAGCTGGCTGGGCCCATGGAGCTTTGGATTCAGGACGCCAAAGACATGAGGATCTCGCTGCCTCATGATGTGGATGCTGGTGTGTTGAAGAAGGTGATGTTGGCAGAAGGCGCTGTGGTCACAGTGAAGGGTGCAAGGTCTGTGAGTCTGCGCCACCCTCTTCAGCTCCCGTTGCCATTAAACCGAACCAACAATGGGTTTGCTTCTGGTCTTGTGACCTTGGCTGAATGGCTGCGCCATGCTTCTCGAACCCAAACATCTCCATTGCTCTCTCTCCGCATTGTTGGTCCTACTTCCCTTGCATCACCTTCACCAACTTCTTCCTCCATGAACAACAAACTCAAGCTTAAGCGCCTTGCCCCAGGCCTTGTGGAGTTGTCCTCACCGTCAACCACCAAACCCATTTCTGTTGAGCTGCAAAATCAAGAGACCACTGCCATTTTAACCCCAAGCTACTTCACCACAGTTTGGCCTCTTGCTTCCGTCAACGGGTCAAACCCGAATTTGCTGGGTTTTGAGGCACTGCTTTCGTCTGTGTTGGGTCATAAGGCCAATAAAAAAGGCTCCTTCAAGTTGTTGAAGGCAGATGTGTCTGCACAAACGTTTTTGAAGATTGGGTTTGGGGTGGAGAAGAAGCTGAAAGAAGGAGATGGTTTTGATTTGAAAGGTTTTCCAGAGTGGAGGACGAAGCCAGAGACTGTAAGGATGCATTTTGAGGTGCTGGCTAAGGTTGATGGTGATAAAATCGTGCCGGAGAGAGTGGTTCCAATTAACCCTGTGGTTCTGGAGGACACTGTGGCACCTAATGAGCTTTCGGGGAATGTCAGCATGTCCACAGTCCCCATCGTTTACCCTCCGGCGAACCCCTTGACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

45.76

Weight (kDa)

6.68

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 1183
AccB7I CCANNNNNTGG 1 cut(s) 852
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 155, 280, 365, 661
AclI AACGTT 1 cut(s) 986
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 886
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 2 cut(s) 218, 355
AfiI CCNNNNNNNGG 3 cut(s) 579, 852, 873
AflII CTTAAG 1 cut(s) 731
AgsI TTSAA 7 cut(s) 121, 259, 472, 955, 964, 994, 1048
AjiI CACGTC 2 cut(s) 229, 274
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 4 cut(s) 62, 94, 467, 499
Alw26I GTCTC 2 cut(s) 806, 1073
AlwI GGATC 1 cut(s) 443
AlwNI CAGNNNCTG 1 cut(s) 1082
Ama87I CYCGRG 2 cut(s) 94, 102
AoxI GGCC 4 cut(s) 395, 748, 854, 933
ApaI GGGCCC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 442, 616, 799
ApoI RAATTY 1 cut(s) 886
AspLEI GCGC 5 cut(s) 196, 497, 537, 621, 738
AspS9I GGNCC 5 cut(s) 277, 334, 395, 396, 671
AsuHPI GGTGA 6 cut(s) 490, 681, 687, 759, 835, 1133
AvaI CYCGRG 2 cut(s) 94, 102
AvaII GGWCC 3 cut(s) 277, 334, 671
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 1183
BanII GRGCYC 2 cut(s) 101, 399
BbvI GCAGC 3 cut(s) 429, 603, 786
BccI CCATC 5 cut(s) 58, 116, 1028, 1112, 1235
BcgI CGANNNNNNTGC 2 cut(s) 894, 928
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 806, 1073
BfoI RGCGCY 2 cut(s) 498, 739
BfrI CTTAAG 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 4 cut(s) 365, 443, 617, 800
BlsI GCNGC 4 cut(s) 366, 444, 618, 801
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 3 cut(s) 277, 334, 671
BmeT110I CYCGRG 2 cut(s) 94, 102
BmgBI CACGTC 2 cut(s) 229, 274
BmgT120I GGNCC 5 cut(s) 277, 334, 395, 396, 671
BmiI GGNNCC 5 cut(s) 378, 397, 949, 1149, 1185
BmrFI CCNGG 1 cut(s) 747
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 448, 695, 1080
BmuI ACTGGG 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 399, 603, 745
Bsc4I CCNNNNNNNGG 3 cut(s) 579, 852, 873
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 647
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 399, 603, 745
BseGI GGATG 2 cut(s) 463, 1095
BseLI CCNNNNNNNGG 3 cut(s) 579, 852, 873
BseMI GCAATG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 3 cut(s) 429, 603, 786
BseYI CCCAGC 3 cut(s) 282, 392, 892
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 4 cut(s) 397, 750, 856, 935
BshNI GGYRCC 1 cut(s) 1183
BsiHKCI CYCGRG 2 cut(s) 94, 102
BsiSI CCGG 4 cut(s) 152, 368, 1136, 1241
BsiWI CGTACG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 203, 1208
BslI CCNNNNNNNGG 3 cut(s) 579, 852, 873
BsmAI GTCTC 2 cut(s) 806, 1073
BsmFI GGGAC 2 cut(s) 203, 1208
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 4 cut(s) 397, 750, 856, 935
Bso31I GGTCTC 1 cut(s) 806
BsoBI CYCGRG 2 cut(s) 94, 102
Bsp120I GGGCCC 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 101, 399
Bsp143I GATC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 4 cut(s) 155, 280, 365, 661
BspANI GGCC 4 cut(s) 397, 750, 856, 935
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 5 cut(s) 378, 397, 949, 1149, 1185
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 1183
BspTI CTTAAG 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 399, 603, 745
BssMI GATC 1 cut(s) 435
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 399, 603
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 6 cut(s) 508, 771, 850, 1084, 1180, 1222
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 420
BstAFI CTTAAG 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 390, 1107
BstDEI CTNAG 1 cut(s) 1110
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 463, 1095
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 2 cut(s) 498, 739
BstHHI GCGC 5 cut(s) 196, 497, 537, 621, 738
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 2 cut(s) 806, 1073
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 7 cut(s) 11, 96, 202, 394, 403, 494, 556
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 1 cut(s) 1216
BstSCI CCNGG 1 cut(s) 745
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 429, 603, 786
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 4 cut(s) 397, 750, 856, 935
BtgI CCRYGG 1 cut(s) 399
BtrI CACGTC 2 cut(s) 229, 274
BtsCI GGATG 2 cut(s) 463, 1095
BtsI GCAGTG 2 cut(s) 816, 905
BtsIMutI CAGTG 4 cut(s) 513, 816, 905, 1176
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 390, 1107
CaiI CAGNNNCTG 1 cut(s) 1082
CciI TCATGA 1 cut(s) 448
CfoI GCGC 5 cut(s) 196, 497, 537, 621, 738
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 5 cut(s) 277, 334, 395, 396, 671
CseI GACGC 2 cut(s) 200, 428
Csp6I GTAC 2 cut(s) 217, 354
CviAII CATG 6 cut(s) 400, 430, 449, 623, 712, 1213
CviQI GTAC 2 cut(s) 217, 354
DdeI CTNAG 1 cut(s) 1110
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 399, 603
Eco147I AGGCCT 1 cut(s) 750
Eco24I GRGCYC 2 cut(s) 101, 399
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 3 cut(s) 277, 334, 671
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 2 cut(s) 94, 102
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 399, 603
EcoT22I ATGCAT 1 cut(s) 1095
EcoT38I GRGCYC 2 cut(s) 101, 399
ErhI CCWWGG 2 cut(s) 399, 603
FaeI CATG 6 cut(s) 403, 433, 452, 626, 715, 1216
FaiI YATR 7 cut(s) 401, 431, 450, 624, 713, 930, 1214
FaqI GGGAC 2 cut(s) 203, 1208
FatI CATG 6 cut(s) 399, 429, 448, 622, 711, 1212
Fnu4HI GCNGC 4 cut(s) 365, 443, 617, 800
FokI GGATG 2 cut(s) 470, 1102
FriOI GRGCYC 2 cut(s) 101, 399
Fsp4HI GCNGC 4 cut(s) 365, 443, 617, 800
GlaI GCGC 5 cut(s) 195, 496, 536, 620, 737
GluI GCNGC 4 cut(s) 365, 443, 617, 800
GsaI CCCAGC 3 cut(s) 286, 396, 896
GsuI CTGGAG 1 cut(s) 1190
HaeII RGCGCY 2 cut(s) 498, 739
HaeIII GGCC 4 cut(s) 397, 750, 856, 935
HapII CCGG 4 cut(s) 152, 368, 1136, 1241
HgaI GACGC 2 cut(s) 200, 428
HhaI GCGC 5 cut(s) 196, 497, 537, 621, 738
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 6 cut(s) 403, 433, 452, 626, 715, 1216
Hin6I GCGC 5 cut(s) 194, 495, 535, 619, 736
HinP1I GCGC 5 cut(s) 194, 495, 535, 619, 736
HincII GTYRAC 2 cut(s) 774, 871
HindII GTYRAC 2 cut(s) 774, 871
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 2 cut(s) 412, 529
HpaII CCGG 4 cut(s) 152, 368, 1136, 1241
HphI GGTGA 6 cut(s) 490, 681, 687, 759, 835, 1133
Hpy166II GTNNAC 6 cut(s) 238, 277, 774, 871, 1218, 1234
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 7 cut(s) 337, 416, 449, 630, 809, 1058, 1169
Hpy8I GTNNAC 6 cut(s) 238, 277, 774, 871, 1218, 1234
Hpy99I CGWCG 2 cut(s) 230, 296
HpyAV CCTTC 9 cut(s) 115, 130, 469, 485, 505, 702, 958, 961, 1022
HpyCH4III ACNGT 6 cut(s) 508, 771, 850, 1084, 1180, 1222
HpyCH4IV ACGT 4 cut(s) 228, 273, 291, 986
HpyCH4V TGCA 5 cut(s) 518, 686, 802, 980, 1093
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 96, 202, 394, 403, 494, 556
HpyF3I CTNAG 1 cut(s) 1110
HpySE526I ACGT 4 cut(s) 228, 273, 291, 986
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 6 cut(s) 403, 433, 452, 626, 715, 1216
HspAI GCGC 5 cut(s) 194, 495, 535, 619, 736
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 4 cut(s) 382, 403, 555, 953
Lsp1109I GCAGC 3 cut(s) 429, 603, 786
LweI GCATC 3 cut(s) 448, 695, 1080
MaeII ACGT 4 cut(s) 228, 273, 291, 986
MaeIII GTNAC 2 cut(s) 502, 598
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 7 cut(s) 45, 48, 484, 536, 696, 1006, 1027
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 2 cut(s) 101, 399
MluCI AATT 3 cut(s) 63, 886, 1152
MlyI GAGTC 1 cut(s) 538
Mph1103I ATGCAT 1 cut(s) 1095
MseI TTAA 5 cut(s) 32, 563, 732, 827, 1155
MspA1I CMGCKG 2 cut(s) 282, 388
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 4 cut(s) 152, 368, 1136, 1241
MspR9I CCNGG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 7 cut(s) 11, 96, 202, 394, 403, 494, 556
NcoI CCATGG 1 cut(s) 399
NdeII GATC 1 cut(s) 435
NlaIII CATG 6 cut(s) 403, 433, 452, 626, 715, 1216
NlaIV GGNNCC 5 cut(s) 378, 397, 949, 1149, 1185
NmuCI GTSAC 2 cut(s) 502, 598
NsiI ATGCAT 1 cut(s) 1095
NspI RCATGY 1 cut(s) 1216
PagI TCATGA 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 412
Pfl23II CGTACG 1 cut(s) 216
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 4 cut(s) 366, 444, 618, 801
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 3 cut(s) 282, 392, 892
PspGI CCWGG 1 cut(s) 745
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 378, 397, 949, 1149, 1185
PspOMI GGGCCC 1 cut(s) 395
PspPI GGNCC 5 cut(s) 277, 334, 395, 396, 671
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 2 cut(s) 218, 355
RsaNI GTAC 2 cut(s) 217, 354
SaqAI TTAA 5 cut(s) 32, 563, 732, 827, 1155
SatI GCNGC 4 cut(s) 365, 443, 617, 800
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 5 cut(s) 277, 334, 395, 396, 671
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 101, 399
SfaNI GCATC 3 cut(s) 448, 695, 1080
SinI GGWCC 3 cut(s) 277, 334, 671
SmlI CTYRAG 2 cut(s) 725, 731
SmoI CTYRAG 2 cut(s) 725, 731
Sse9I AATT 3 cut(s) 63, 886, 1152
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 4 cut(s) 155, 280, 365, 661
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 2 cut(s) 399, 603
TaaI ACNGT 6 cut(s) 508, 771, 850, 1084, 1180, 1222
TaiI ACGT 4 cut(s) 231, 276, 294, 989
TaqI TCGA 5 cut(s) 180, 225, 294, 315, 631
TasI AATT 3 cut(s) 63, 886, 1152
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 5 cut(s) 32, 563, 732, 827, 1155
Tru9I TTAA 5 cut(s) 32, 563, 732, 827, 1155
TscAI CASTG 4 cut(s) 513, 823, 912, 1183
TseFI GTSAC 2 cut(s) 502, 598
TseI GCWGC 3 cut(s) 442, 616, 799
Tsp45I GTSAC 2 cut(s) 502, 598
TspDTI ATGAA 1 cut(s) 728
TspGWI ACGGA 2 cut(s) 369, 856
TspRI CASTG 4 cut(s) 513, 823, 912, 1183
Van91I CCANNNNNTGG 1 cut(s) 852
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 277, 334, 671
XapI RAATTY 1 cut(s) 886
XceI RCATGY 1 cut(s) 1216
Zsp2I ATGCAT 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.