Rh6BG029500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
4412179 .. 4415544
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG029500.1

Sequence Viewer

Length: 1272 bp
ATGCAAATGGCTCTCCACACCCTGCTTTTGATCCTCCTCTTAGCTCTTGCGCATTTTCAACCTTCTTCCTCTCTAATTTCGACCCCCGGTTGGAACCCTCGCTACCCCAGCCCCAGAGCCATCTCCGATTTGAAGGAGGCGATAGTGAAGGGATTGGGATTCCAAGCGGACGATCTGAAGATATCGGGGTTTGATCTGAGGGACGCGCAGGTGGGGCATTCGGTGGCGTACGAGTTCGACGTGGAGGTAGATAAGAAGGTGCTTCCTTTCAAGCTTTTGGAGGACGTTGACCGCTGGGAGTACGTTGACCTGCCGGTGTTTCGGGTCGAGGATGAAAGCGGGTTGGTCCCGAAGGGCAAATTGGACGACGGGTTGCCGCCCGTTTTGGCTCCGTTTCAGCTGGCCGGGCCCATGGAGCTCTGGATTCAGGACGCTAAAGACATGAGGCTCTCGCTCCCACATGATGTGGATGCTGGAGTGTTGAAGAAGGTGGTTTTAGCAGAAGGGGCTGTGGTTACTGTGACAGGTGCTAGGTCGGTGAGCCTAAGGCACCCTCTTCAGCTTCCATTGCCACTGAATCGGACCAGCAGTGGTTTTGCTTCTGGGCTCGTGACCCTAGCTGAATGGCTACACCATGCTTCTAGAACCGAATCAGCTCCGTTGCTGTCTCTCCGCATTGTTGGTCCAACCGCTCTTACAGCCCCTGCCTCGACCTCTCCCTCCATGAACAACAAGCTCAAGCTTAAGCGGCTTGCTCCTGGCCTTGTGGAGTTGTCATCACTGGCTAAAACAAGGCCCATGTCTGTTGAGCTGCAAAACCAAGAGACCACCATTTTAACTCCAAAATACTTCACAACTGTTTGGCCCCTTGCTTCTGTCAATGGGTCGAACGCCAACTTGCTGGCTTTTGAGTCACTGCTTTCAACTGTTCTTGGTCCCAAGGCAAACAAAAAAGGTTCCTTTAAATTGTTGAAGGCAGATGTGTCAGCGCAGACGTTCTTGAAGATTGGGTTTGGGGTGGAGAAGAAGGTGAAAGAAGGTGATGGGATAGACTGGACAGGTTTTCCAGCATGGAGGACAAAGCCTGAGACTGTAAGGATGCATTTCGAGGTGCTTGCTAAGGTTGATGGCGATAAAATTGTGCCAGAGAGAGTGGTTCCAGTTAACCCTGTGATCTTGGAGGACACTGTAGCACCTAATGTGCTGTCCGGGAATGTCTCCATGTCCACGACCCCCATAGTTCAACCTCCCCCTAATCCCTTTACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

423

Amino Acids

45.96

Weight (kDa)

7.12

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
Acc16I TGCGCA 1 cut(s) 51
Acc36I ACCTGC 2 cut(s) 199, 318
AccB1I GGYRCC 1 cut(s) 549
AccBSI CCGCTC 1 cut(s) 692
AccII CGCG 1 cut(s) 206
AciI CCGC 7 cut(s) 167, 292, 339, 377, 673, 690, 748
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 402
AcuI CTGAAG 2 cut(s) 197, 542
AfaI GTAC 2 cut(s) 230, 302
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 8 cut(s) 59, 133, 271, 484, 924, 973, 1003, 1244
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 4 cut(s) 672, 818, 1082, 1222
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 5 cut(s) 402, 407, 760, 794, 863
ApaI GGGCCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 811
AspLEI GCGC 3 cut(s) 52, 208, 991
AspS9I GGNCC 8 cut(s) 346, 407, 408, 582, 683, 795, 864, 935
AsuC2I CCSGG 3 cut(s) 87, 406, 1210
AsuHPI GGTGA 3 cut(s) 550, 1042, 1052
AvaII GGWCC 4 cut(s) 346, 582, 683, 935
AxyI CCTNAGG 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 549
BanII GRGCYC 3 cut(s) 411, 420, 609
BauI CACGAG 1 cut(s) 608
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 798
BccI CCATC 3 cut(s) 128, 1037, 1121
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BciT130I CCWGG 1 cut(s) 759
BcnI CCSGG 3 cut(s) 87, 406, 1210
BcoDI GTCTC 4 cut(s) 672, 818, 1082, 1222
BfaI CTAG 3 cut(s) 531, 617, 642
BfmI CTRYAG 1 cut(s) 1188
BfrI CTTAAG 1 cut(s) 743
BfuAI ACCTGC 2 cut(s) 199, 318
BisI GCNGC 3 cut(s) 377, 749, 812
BlsI GCNGC 3 cut(s) 378, 750, 813
Bme1390I CCNGG 4 cut(s) 87, 406, 759, 1210
Bme18I GGWCC 4 cut(s) 346, 582, 683, 935
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 8 cut(s) 346, 407, 408, 582, 683, 795, 864, 935
BmiI GGNNCC 9 cut(s) 95, 348, 390, 409, 551, 866, 937, 958, 1158
BmrFI CCNGG 4 cut(s) 87, 406, 759, 1210
BmsI GCATC 2 cut(s) 460, 1089
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 1119
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 3 cut(s) 87, 406, 1210
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 3 cut(s) 85, 411, 939
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 786, 1058, 1160
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 85, 411, 939
BseGI GGATG 3 cut(s) 337, 475, 1104
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 2 cut(s) 188, 1077
BseNI ACTGG 3 cut(s) 786, 1058, 1160
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 1 cut(s) 798
BseYI CCCAGC 2 cut(s) 107, 294
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 5 cut(s) 404, 409, 762, 796, 865
BshNI GGYRCC 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 4 cut(s) 87, 314, 405, 1209
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 3 cut(s) 215, 332, 921
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 4 cut(s) 672, 818, 1082, 1222
BsmFI GGGAC 3 cut(s) 215, 332, 921
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 5 cut(s) 404, 409, 762, 796, 865
Bso31I GGTCTC 1 cut(s) 818
Bsp120I GGGCCC 1 cut(s) 407
Bsp1286I GDGCHC 3 cut(s) 411, 420, 609
Bsp143I GATC 4 cut(s) 30, 172, 193, 1173
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 7 cut(s) 167, 292, 339, 377, 673, 690, 748
BspANI GGCC 5 cut(s) 404, 409, 762, 796, 865
BspCNI CTCAG 2 cut(s) 189, 1078
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 9 cut(s) 95, 348, 390, 409, 551, 866, 937, 958, 1158
BspMI ACCTGC 2 cut(s) 199, 318
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 3 cut(s) 786, 1058, 1160
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 85, 411, 939
BssMI GATC 4 cut(s) 30, 172, 193, 1173
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 411, 939
Bst2BI CACGAG 1 cut(s) 608
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 520, 859, 928, 1093, 1189
Bst6I CTCTTC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 743
BstC8I GCNNGC 4 cut(s) 402, 753, 903, 1116
BstDEI CTNAG 5 cut(s) 40, 197, 545, 1086, 1119
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 337, 475, 1104
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 3 cut(s) 52, 208, 991
BstKTI GATC 4 cut(s) 33, 175, 196, 1176
BstMAI GTCTC 4 cut(s) 672, 818, 1082, 1222
BstMBI GATC 4 cut(s) 30, 172, 193, 1173
BstMWI GCNNNNNNNGC 8 cut(s) 108, 214, 406, 415, 506, 568, 698, 748
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 4 cut(s) 85, 404, 757, 1208
BstSFI CTRYAG 1 cut(s) 1188
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 901
Bsu36I CCTNAGG 1 cut(s) 545
BsuRI GGCC 5 cut(s) 404, 409, 762, 796, 865
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 3 cut(s) 337, 475, 1104
BtsI GCAGTG 2 cut(s) 595, 914
BtsIMutI CAGTG 5 cut(s) 572, 595, 779, 914, 1185
BveI ACCTGC 2 cut(s) 199, 318
Cac8I GCNNGC 4 cut(s) 402, 753, 903, 1116
CaiI CAGNNNCTG 1 cut(s) 704
CfoI GCGC 3 cut(s) 52, 208, 991
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 8 cut(s) 346, 407, 408, 582, 683, 795, 864, 935
CseI GACGC 2 cut(s) 212, 440
Csp6I GTAC 2 cut(s) 229, 301
CviAII CATG 8 cut(s) 412, 442, 461, 635, 724, 799, 1071, 1222
CviQI GTAC 2 cut(s) 229, 301
DdeI CTNAG 5 cut(s) 40, 197, 545, 1086, 1119
DpnI GATC 4 cut(s) 32, 174, 195, 1175
DpnII GATC 4 cut(s) 30, 172, 193, 1173
DraI TTTAAA 1 cut(s) 964
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 411, 939
Eco24I GRGCYC 3 cut(s) 411, 420, 609
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 183
Eco47I GGWCC 4 cut(s) 346, 582, 683, 935
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 197, 542
Eco81I CCTNAGG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 411, 939
EcoT22I ATGCAT 1 cut(s) 1104
EcoT38I GRGCYC 3 cut(s) 411, 420, 609
ErhI CCWWGG 2 cut(s) 411, 939
FaeI CATG 8 cut(s) 415, 445, 464, 638, 727, 802, 1074, 1225
FaiI YATR 9 cut(s) 413, 443, 462, 636, 725, 800, 1072, 1223, 1238
FaqI GGGAC 3 cut(s) 215, 332, 921
FatI CATG 8 cut(s) 411, 441, 460, 634, 723, 798, 1070, 1221
FauI CCCGC 1 cut(s) 332
Fnu4HI GCNGC 3 cut(s) 377, 749, 812
FokI GGATG 3 cut(s) 344, 482, 1111
FriOI GRGCYC 3 cut(s) 411, 420, 609
Fsp4HI GCNGC 3 cut(s) 377, 749, 812
FspBI CTAG 3 cut(s) 531, 617, 642
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 3 cut(s) 51, 207, 990
GluI GCNGC 3 cut(s) 377, 749, 812
GsaI CCCAGC 2 cut(s) 111, 298
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 5 cut(s) 404, 409, 762, 796, 865
HapII CCGG 4 cut(s) 87, 314, 405, 1209
HgaI GACGC 2 cut(s) 212, 440
HhaI GCGC 3 cut(s) 52, 208, 991
Hin1II CATG 8 cut(s) 415, 445, 464, 638, 727, 802, 1074, 1225
Hin6I GCGC 3 cut(s) 50, 206, 989
HinP1I GCGC 3 cut(s) 50, 206, 989
HincII GTYRAC 3 cut(s) 289, 307, 1165
HindII GTYRAC 3 cut(s) 289, 307, 1165
HindIII AAGCTT 2 cut(s) 272, 740
HinfI GANTC 5 cut(s) 159, 424, 577, 650, 911
HpaI GTTAAC 1 cut(s) 1165
HpaII CCGG 4 cut(s) 87, 314, 405, 1209
HphI GGTGA 3 cut(s) 550, 1042, 1052
Hpy166II GTNNAC 4 cut(s) 289, 307, 1165, 1227
Hpy188I TCNGA 4 cut(s) 127, 177, 198, 582
Hpy188III TCNNGA 6 cut(s) 349, 421, 428, 610, 642, 1000
Hpy8I GTNNAC 4 cut(s) 289, 307, 1165, 1227
Hpy99I CGWCG 2 cut(s) 242, 371
HpyCH4III ACNGT 5 cut(s) 520, 859, 928, 1093, 1189
HpyCH4IV ACGT 4 cut(s) 240, 285, 303, 995
HpyCH4V TGCA 3 cut(s) 4, 814, 1102
HpyF10VI GCNNNNNNNGC 8 cut(s) 108, 214, 406, 415, 506, 568, 698, 748
HpyF3I CTNAG 5 cut(s) 40, 197, 545, 1086, 1119
HpySE526I ACGT 4 cut(s) 240, 285, 303, 995
Hsp92II CATG 8 cut(s) 415, 445, 464, 638, 727, 802, 1074, 1225
HspAI GCGC 3 cut(s) 50, 206, 989
KspAI GTTAAC 1 cut(s) 1165
Kzo9I GATC 4 cut(s) 30, 172, 193, 1173
LmnI GCTCC 5 cut(s) 394, 415, 459, 661, 760
Lsp1109I GCAGC 1 cut(s) 798
LweI GCATC 2 cut(s) 460, 1089
MaeI CTAG 3 cut(s) 531, 617, 642
MaeII ACGT 4 cut(s) 240, 285, 303, 995
MaeIII GTNAC 4 cut(s) 514, 520, 610, 912
MalI GATC 4 cut(s) 32, 174, 195, 1175
MbiI CCGCTC 1 cut(s) 692
MboI GATC 4 cut(s) 30, 172, 193, 1173
MboII GAAGA 6 cut(s) 57, 190, 496, 548, 1015, 1036
MhlI GDGCHC 3 cut(s) 411, 420, 609
MluCI AATT 4 cut(s) 75, 359, 965, 1137
MlyI GAGTC 1 cut(s) 920
MmeI TCCRAC 2 cut(s) 71, 710
Mph1103I ATGCAT 1 cut(s) 1104
MseI TTAA 4 cut(s) 744, 836, 963, 1164
MspA1I CMGCKG 2 cut(s) 294, 400
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 4 cut(s) 87, 314, 405, 1209
MspR9I CCNGG 4 cut(s) 87, 406, 759, 1210
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 8 cut(s) 108, 214, 406, 415, 506, 568, 698, 748
NciI CCSGG 3 cut(s) 87, 406, 1210
NcoI CCATGG 1 cut(s) 411
NdeII GATC 4 cut(s) 30, 172, 193, 1173
NlaIII CATG 8 cut(s) 415, 445, 464, 638, 727, 802, 1074, 1225
NlaIV GGNNCC 9 cut(s) 95, 348, 390, 409, 551, 866, 937, 958, 1158
NmuCI GTSAC 3 cut(s) 520, 610, 912
NsbI TGCGCA 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 1104
PaqCI CACCTGC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 4 cut(s) 159, 424, 577, 650
Pfl23II CGTACG 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 1208
PkrI GCNGC 3 cut(s) 378, 750, 813
PleI GAGTC 1 cut(s) 919
PpsI GAGTC 1 cut(s) 919
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 2 cut(s) 107, 294
PspGI CCWGG 1 cut(s) 757
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 9 cut(s) 95, 348, 390, 409, 551, 866, 937, 958, 1158
PspOMI GGGCCC 1 cut(s) 407
PspPI GGNCC 8 cut(s) 346, 407, 408, 582, 683, 795, 864, 935
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 2 cut(s) 230, 302
RsaNI GTAC 2 cut(s) 229, 301
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 4 cut(s) 744, 836, 963, 1164
SatI GCNGC 3 cut(s) 377, 749, 812
Sau3AI GATC 4 cut(s) 30, 172, 193, 1173
Sau96I GGNCC 8 cut(s) 346, 407, 408, 582, 683, 795, 864, 935
SchI GAGTC 1 cut(s) 920
ScrFI CCNGG 4 cut(s) 87, 406, 759, 1210
SduI GDGCHC 3 cut(s) 411, 420, 609
SfaNI GCATC 2 cut(s) 460, 1089
SfcI CTRYAG 1 cut(s) 1188
SinI GGWCC 4 cut(s) 346, 582, 683, 935
SmlI CTYRAG 2 cut(s) 737, 743
SmoI CTYRAG 2 cut(s) 737, 743
Sse9I AATT 4 cut(s) 75, 359, 965, 1137
SsiI CCGC 7 cut(s) 167, 292, 339, 377, 673, 690, 748
SspMI CTAG 3 cut(s) 531, 617, 642
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 4 cut(s) 85, 404, 757, 1208
StyI CCWWGG 2 cut(s) 411, 939
TaaI ACNGT 5 cut(s) 520, 859, 928, 1093, 1189
TaiI ACGT 4 cut(s) 243, 288, 306, 998
TaqI TCGA 6 cut(s) 80, 237, 327, 710, 887, 1107
TasI AATT 4 cut(s) 75, 359, 965, 1137
TauI GCSGC 2 cut(s) 379, 751
TfiI GAWTC 4 cut(s) 159, 424, 577, 650
Tru1I TTAA 4 cut(s) 744, 836, 963, 1164
Tru9I TTAA 4 cut(s) 744, 836, 963, 1164
TscAI CASTG 5 cut(s) 579, 595, 786, 921, 1192
TseFI GTSAC 3 cut(s) 520, 610, 912
TseI GCWGC 1 cut(s) 811
Tsp45I GTSAC 3 cut(s) 520, 610, 912
TspDTI ATGAA 2 cut(s) 348, 740
TspGWI ACGGA 2 cut(s) 381, 648
TspRI CASTG 5 cut(s) 579, 595, 786, 921, 1192
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 4 cut(s) 346, 582, 683, 935
XbaI TCTAGA 1 cut(s) 641
XspI CTAG 3 cut(s) 531, 617, 642
Zsp2I ATGCAT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.