Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Forward (+)

25908247 .. 25909881

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATATCTCTCAAAACCCTAGCCCTAATTTTACGTACTTCTCCGATGAAAACTTTATTAATCCGTTTATGGATAACAACGATTTCTCAAATTTGATGTTCTTTGACATAGATGAAGGAGGTAACAATGGATTAATCGAGGAAGAGATCTCATCTCCGACAAGCATCGTTTCGTCGGAGACATTTACCGGGGAAAGCGGCGGATCCGGCAGCGCAACAACGTTGAGTAAAAAGGAATCAACTAATAGAGGAAGTAAAGAGAGTGATCAGACGAAGGAGACGGGTCATCGAGTTGCATTTAGAACGAGATCGAAGATTGATGTGATGGATGATGGTTTTAAATGGAGGAAGTATGGCAAGAAATCTGTCAAAAACAACATTAACAAGAGGAATTACTACAAATGCTCAAGTGAAGGTTGCTCGGTGAAGAAGAGGGTAGAGAGAGATGGTGACGATGCAGCTTATGTAATTACAACATATGAAGGAGTCCATAACCATGAGAGTCTCTCTAATGTCTATTACAATGAAATGGTTTTATCTTATGATCATGATAACTGGAACCAACACTCTCTTCTTCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

194

Amino Acids

22.04

Weight (kDa)

5.41

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	110 - 167	4.7e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	198, 201
AclI	AACGTT	1 cut(s)	221
AclWI	GGATC	2 cut(s)	198, 211
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	1 cut(s)	555
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	173, 272, 509
AlwI	GGATC	2 cut(s)	198, 211
ApeKI	GCWGC	2 cut(s)	210, 458
ApoI	RAATTY	1 cut(s)	91
AseI	ATTAAT	2 cut(s)	60, 134
AspLEI	GCGC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	436, 461
BamHI	GGATCC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	222, 470
BccI	CCATC	3 cut(s)	319, 326, 440
BclI	TGATCA	2 cut(s)	265, 544
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	173, 272, 509
BfaI	CTAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	3 cut(s)	199, 211, 459
BlsI	GCNGC	3 cut(s)	200, 212, 460
Bme1390I	CCNGG	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	205, 560
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	174, 445
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpuEI	CTTGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	222, 470
BsiSI	CCGG	2 cut(s)	189, 207
BsmAI	GTCTC	3 cut(s)	173, 272, 509
BsmBI	CGTCTC	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
BspACI	CCGC	2 cut(s)	198, 201
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	205, 560
BspPI	GGATC	2 cut(s)	198, 211
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
Bst6I	CTCTTC	3 cut(s)	138, 425, 576
BstBAI	YACGTR	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	6 cut(s)	150, 206, 268, 311, 547, 581
BstMAI	GTCTC	3 cut(s)	173, 272, 509
BstMBI	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	188
BstSNI	TACGTA	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	222, 470
BstX2I	RGATCY	2 cut(s)	147, 203
BstYI	RGATCY	2 cut(s)	147, 203
BtsCI	GGATG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	497, 548
CviJI	RGCY	2 cut(s)	24, 461
CviKI_1	RGCY	2 cut(s)	24, 461
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	6 cut(s)	149, 205, 267, 310, 546, 580
DpnII	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	3 cut(s)	138, 425, 576
EarI	CTCTTC	3 cut(s)	138, 425, 576
EciI	GGCGGA	1 cut(s)	216
Eco105I	TACGTA	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	2 cut(s)	500, 551
FatI	CATG	2 cut(s)	496, 547
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	2 cut(s)	265, 544
Fnu4HI	GCNGC	3 cut(s)	199, 211, 459
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	199, 211, 459
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	3 cut(s)	199, 211, 459
HapII	CCGG	2 cut(s)	189, 207
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	500, 551
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	236, 486, 502
HpaII	CCGG	2 cut(s)	189, 207
HphI	GGTGA	2 cut(s)	436, 461
Hpy188I	TCNGA	4 cut(s)	46, 159, 178, 270
Hpy188III	TCNNGA	1 cut(s)	548
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	110, 268, 407, 476
HpyCH4IV	ACGT	2 cut(s)	35, 221
HpyCH4V	TGCA	2 cut(s)	296, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	35, 221
Hsp92II	CATG	2 cut(s)	500, 551
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	265, 544
Kzo9I	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
LpnPI	CCDG	3 cut(s)	202, 220, 541
Lsp1109I	GCAGC	2 cut(s)	222, 470
LweI	GCATC	2 cut(s)	174, 445
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	35, 221
MaeIII	GTNAC	2 cut(s)	122, 449
MalI	GATC	6 cut(s)	149, 205, 267, 310, 546, 580
MboI	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
MboII	GAAGA	6 cut(s)	155, 325, 439, 442, 563, 566
MflI	RGATCY	2 cut(s)	147, 203
MluCI	AATT	4 cut(s)	28, 91, 391, 468
MlyI	GAGTC	2 cut(s)	495, 511
MmeI	TCCRAC	2 cut(s)	156, 182
MnlI	CCTC	6 cut(s)	113, 133, 242, 339, 381, 426
MseI	TTAA	5 cut(s)	60, 134, 339, 381, 583
MslI	CAYNNNNRTG	1 cut(s)	495
MspI	CCGG	2 cut(s)	189, 207
MspR9I	CCNGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
NlaIII	CATG	2 cut(s)	500, 551
NlaIV	GGNNCC	2 cut(s)	205, 560
NmuCI	GTSAC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	200, 212, 460
PleI	GAGTC	2 cut(s)	494, 510
PpsI	GAGTC	2 cut(s)	494, 510
Ppu21I	YACGTR	1 cut(s)	36
PshBI	ATTAAT	2 cut(s)	60, 134
Psp1406I	AACGTT	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	205, 560
PsuI	RGATCY	2 cut(s)	147, 203
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	5 cut(s)	60, 134, 339, 381, 583
SatI	GCNGC	3 cut(s)	199, 211, 459
Sau3AI	GATC	6 cut(s)	147, 203, 265, 308, 544, 578
SchI	GAGTC	2 cut(s)	495, 511
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	5 cut(s)	38, 124, 224, 418, 463
SfaNI	GCATC	2 cut(s)	174, 445
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SnaBI	TACGTA	1 cut(s)	36
Sse9I	AATT	4 cut(s)	28, 91, 391, 468
SsiI	CCGC	2 cut(s)	198, 201
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	188
TaiI	ACGT	2 cut(s)	38, 224
TaqI	TCGA	4 cut(s)	138, 289, 311, 577
TasI	AATT	4 cut(s)	28, 91, 391, 468
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	5 cut(s)	60, 134, 339, 381, 583
Tru9I	TTAA	5 cut(s)	60, 134, 339, 381, 583
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	210, 458
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	17, 63, 129, 495, 540
TspGWI	ACGGA	1 cut(s)	54
VspI	ATTAAT	2 cut(s)	60, 134
XapI	RAATTY	1 cut(s)	91
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.