Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

30458544 .. 30461404

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGACTCAAACCCTAGCTGGTCGAACTGCGCTCCATTTGGAGAGAATCAGCTGGATCCGAACTCCATGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCGTCGTCGCTGAGAATGATATCGCCAGAAACATGTCATAGTACTGCTGCTGCTGCTGCTGCTGCTGGTTCAAGTAGTGCAACATCAGGAAATTCCAGCACTAATATAAATGCGGCGACAATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCGGAGCTGGAGATCATGGATGATGGTTTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGCTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCATTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

203

Amino Acids

22.39

Weight (kDa)

6.15

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	109 - 166	4.3e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	4 cut(s)	50, 63, 548, 561
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	70, 220
AfaI	GTAC	2 cut(s)	172, 350
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	201, 337, 526
AhlI	ACTAGT	1 cut(s)	538
AluBI	AGCT	6 cut(s)	18, 52, 313, 459, 517, 584
AluI	AGCT	6 cut(s)	18, 52, 313, 459, 517, 584
Alw21I	GWGCWC	1 cut(s)	404
AlwI	GGATC	4 cut(s)	50, 63, 548, 561
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	9 cut(s)	176, 179, 182, 185, 188, 191, 414, 514, 533
ApoI	RAATTY	2 cut(s)	70, 220
AspLEI	GCGC	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	2 cut(s)	55, 553
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 401, 520, 526
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	2 cut(s)	15, 539
BmcAI	AGTACT	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	57, 555
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	388
BsaBI	GATNNNNATC	2 cut(s)	120, 552
Bse8I	GATNNNNATC	2 cut(s)	120, 552
BseGI	GGATG	2 cut(s)	331, 553
BseJI	GATNNNNATC	2 cut(s)	120, 552
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 401, 520, 526
BsgI	GTGCAG	2 cut(s)	519, 533
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	55, 118, 318, 553
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	57, 555
BspPI	GGATC	4 cut(s)	50, 63, 548, 561
BssMI	GATC	4 cut(s)	55, 118, 318, 553
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	331, 553
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	58, 121, 321, 556
BstMBI	GATC	4 cut(s)	55, 118, 318, 553
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 185, 188, 191
BstNSI	RCATGY	1 cut(s)	165
BstV1I	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 401, 520, 526
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	55, 553
BstYI	RGATCY	2 cut(s)	55, 553
BsuRI	GGCC	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	331, 553
Cac8I	GCNNGC	1 cut(s)	412
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	171, 349
CviAII	CATG	6 cut(s)	67, 97, 162, 278, 322, 494
CviJI	RGCY	9 cut(s)	18, 52, 282, 313, 375, 414, 459, 517, 584
CviKI_1	RGCY	9 cut(s)	18, 52, 282, 313, 375, 414, 459, 517, 584
CviQI	GTAC	2 cut(s)	171, 349
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	57, 120, 320, 555
DpnII	GATC	4 cut(s)	55, 118, 318, 553
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	6 cut(s)	70, 100, 165, 281, 325, 497
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	6 cut(s)	66, 96, 161, 277, 321, 493
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	2 cut(s)	338, 560
FspBI	CTAG	2 cut(s)	15, 539
GlaI	GCGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	70, 100, 165, 281, 325, 497
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	5, 46, 128, 452
Hpy188I	TCNGA	3 cut(s)	60, 88, 310
Hpy188III	TCNNGA	4 cut(s)	125, 216, 367, 494
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	5 cut(s)	209, 293, 487, 514, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 185, 188, 191
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	6 cut(s)	70, 100, 165, 281, 325, 497
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	55, 118, 318, 553
LmnI	GCTCC	3 cut(s)	37, 310, 522
Lsp1109I	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 401, 520, 526
MaeI	CTAG	2 cut(s)	15, 539
MaeII	ACGT	1 cut(s)	564
MalI	GATC	4 cut(s)	57, 120, 320, 555
MboI	GATC	4 cut(s)	55, 118, 318, 553
MboII	GAAGA	6 cut(s)	265, 439, 461, 579, 588, 597
MflI	RGATCY	2 cut(s)	55, 553
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	4 cut(s)	70, 220, 388, 505
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	3 cut(s)	336, 432, 472
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	182, 185, 188, 191
NdeII	GATC	4 cut(s)	55, 118, 318, 553
NlaIII	CATG	6 cut(s)	70, 100, 165, 281, 325, 497
NlaIV	GGNNCC	2 cut(s)	57, 555
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	454
PagI	TCATGA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	46, 128
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PscI	ACATGT	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	57, 555
PspXI	VCTCGAGB	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	55, 553
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	172, 350
RsaNI	GTAC	2 cut(s)	171, 349
RseI	CAYNNNNRTG	1 cut(s)	492
Sau3AI	GATC	4 cut(s)	55, 118, 318, 553
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	7 cut(s)	20, 54, 315, 461, 519, 567, 586
Sfr274I	CTCGAG	1 cut(s)	454
SlaI	CTCGAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	403, 454
SmoI	CTYRAG	2 cut(s)	403, 454
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	4 cut(s)	70, 220, 388, 505
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	15, 539
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	4 cut(s)	23, 75, 102, 455
TaqII	GACCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	70, 220, 388, 505
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	46, 128
TseI	GCWGC	9 cut(s)	176, 179, 182, 185, 188, 191, 414, 514, 533
TspDTI	ATGAA	3 cut(s)	83, 266, 597
XapI	RAATTY	2 cut(s)	70, 220
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	454
XspI	CTAG	2 cut(s)	15, 539
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.