Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

14758722 .. 14761469

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22820.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGACTCAAACCCTAGCTGGATGAACTGCGGTCAGTTTGGAGAGAATCAGCTGGATCAGAACTCGATGGGTTTCGATGAGTTATCGGAATATCTCATGCTCGATTACAGGGTCGATGATTATCAGGATTCGTCGTCGCTGATGAGCATGATATCGCCGGAAACATGTCATGGTACTGCTGCTGGTTGTGGTTCAAGTAGTGCAACATCAAGAAATTCCACCACTAATATAAATGCGGCAGCGATGAAGAACAGCATGAGAGAAGGGGGTCATGCCCATAGGGGCCATAGGGTTGCATTTAGAACAAAATCGGAGCTGGAGATCATGGATGATGGTTTCAAGTGGAGGAAGTACGGCAAGAAGTACGTGAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGTGGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGAGAAAGAAGACTCGAGCTATGTGATTACAACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTGCATTTCAATCCTGCTTCACTAGTAGTGGATGTGGATCCCAACAACATTTGGACTACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

206

Amino Acids

22.97

Weight (kDa)

6.15

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	29 - 86	2e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 236
AclWI	GGATC	3 cut(s)	63, 551, 564
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	3 cut(s)	175, 353, 365
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	195, 340, 529
AhlI	ACTAGT	1 cut(s)	541
AluBI	AGCT	6 cut(s)	18, 52, 316, 462, 520, 590
AluI	AGCT	6 cut(s)	18, 52, 316, 462, 520, 590
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	63, 551, 564
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	5 cut(s)	179, 239, 417, 517, 520
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	5 cut(s)	166, 251, 404, 507, 529
BccI	CCATC	2 cut(s)	61, 326
BceAI	ACGGC	1 cut(s)	370
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	2 cut(s)	15, 542
BisI	GCNGC	6 cut(s)	180, 237, 240, 418, 518, 521
BlsI	GCNGC	6 cut(s)	181, 238, 241, 419, 519, 522
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	284, 558
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	367
BsaBI	GATNNNNATC	2 cut(s)	120, 555
Bse8I	GATNNNNATC	2 cut(s)	120, 555
BseGI	GGATG	3 cut(s)	27, 334, 556
BseJI	GATNNNNATC	2 cut(s)	120, 555
BseXI	GCAGC	5 cut(s)	166, 251, 404, 507, 529
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	55, 321, 556
BspACI	CCGC	2 cut(s)	30, 236
BspANI	GGCC	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	284, 558
BspPI	GGATC	3 cut(s)	63, 551, 564
BssMI	GATC	3 cut(s)	55, 321, 556
Bst6I	CTCTTC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	27, 334, 556
BstKTI	GATC	3 cut(s)	58, 324, 559
BstMBI	GATC	3 cut(s)	55, 321, 556
BstNSI	RCATGY	1 cut(s)	168
BstV1I	GCAGC	5 cut(s)	166, 251, 404, 507, 529
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	285
BtgZI	GCGATG	2 cut(s)	257, 435
BtsCI	GGATG	3 cut(s)	27, 334, 556
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	174, 352, 364
CviAII	CATG	8 cut(s)	97, 148, 165, 170, 256, 272, 325, 497
CviJI	RGCY	9 cut(s)	18, 52, 285, 316, 378, 417, 462, 520, 590
CviKI_1	RGCY	9 cut(s)	18, 52, 285, 316, 378, 417, 462, 520, 590
CviQI	GTAC	3 cut(s)	174, 352, 364
DpnI	GATC	3 cut(s)	57, 323, 558
DpnII	GATC	3 cut(s)	55, 321, 556
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	153
FaeI	CATG	8 cut(s)	100, 151, 168, 173, 259, 275, 328, 500
FatI	CATG	8 cut(s)	96, 147, 164, 169, 255, 271, 324, 496
Fnu4HI	GCNGC	6 cut(s)	180, 237, 240, 418, 518, 521
FokI	GGATG	3 cut(s)	34, 341, 563
Fsp4HI	GCNGC	6 cut(s)	180, 237, 240, 418, 518, 521
FspBI	CTAG	2 cut(s)	15, 542
GluI	GCNGC	6 cut(s)	180, 237, 240, 418, 518, 521
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	8 cut(s)	100, 151, 168, 173, 259, 275, 328, 500
HinfI	GANTC	4 cut(s)	5, 46, 128, 455
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	3 cut(s)	60, 88, 313
Hpy188III	TCNNGA	3 cut(s)	125, 210, 497
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	5 cut(s)	203, 296, 490, 517, 523
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	8 cut(s)	100, 151, 168, 173, 259, 275, 328, 500
Kzo9I	GATC	3 cut(s)	55, 321, 556
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	4, 38, 94, 110, 168, 171, 302, 400, 546
Lsp1109I	GCAGC	5 cut(s)	166, 251, 404, 507, 529
MaeI	CTAG	2 cut(s)	15, 542
MaeII	ACGT	1 cut(s)	366
MalI	GATC	3 cut(s)	57, 323, 558
MboI	GATC	3 cut(s)	55, 321, 556
MboII	GAAGA	6 cut(s)	259, 382, 442, 464, 585, 594
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	3 cut(s)	214, 391, 508
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	3 cut(s)	339, 435, 475
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	52, 520
MspI	CCGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	492
NdeII	GATC	3 cut(s)	55, 321, 556
NlaIII	CATG	8 cut(s)	100, 151, 168, 173, 259, 275, 328, 500
NlaIV	GGNNCC	2 cut(s)	284, 558
NspI	RCATGY	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	46, 128
PkrI	GCNGC	6 cut(s)	181, 238, 241, 419, 519, 522
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	367
PscI	ACATGT	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	284, 558
PspPI	GGNCC	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	2 cut(s)	52, 520
RsaI	GTAC	3 cut(s)	175, 353, 365
RsaNI	GTAC	3 cut(s)	174, 352, 364
RseI	CAYNNNNRTG	1 cut(s)	495
SatI	GCNGC	6 cut(s)	180, 237, 240, 418, 518, 521
Sau3AI	GATC	3 cut(s)	55, 321, 556
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	7 cut(s)	20, 54, 318, 369, 464, 522, 592
Sfr274I	CTCGAG	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	406, 457
SmoI	CTYRAG	2 cut(s)	406, 457
SpeI	ACTAGT	1 cut(s)	541
Sse9I	AATT	3 cut(s)	214, 391, 508
SsiI	CCGC	2 cut(s)	30, 236
SspMI	CTAG	2 cut(s)	15, 542
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	65, 75, 102, 114, 458
TasI	AATT	3 cut(s)	214, 391, 508
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	46, 128
TseI	GCWGC	5 cut(s)	179, 239, 417, 517, 520
TspDTI	ATGAA	2 cut(s)	38, 260
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	457
XspI	CTAG	2 cut(s)	15, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.