Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Forward (+)

36715532 .. 36718649

Gene Structure 3118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1331300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACTGTCTTGATGAGGATCCAAACCCTAACCCTAATCACTTTGTAGAGAAGTACATCGTCGATCCGCCTCCGATGGATTTTGATGAGCTTTCAAACTATCTCATGCTTGATGAGTATGATTTTAGTCGTGATCATCAAGATTCTTCTTCGTCGCAAAGTGTTGGCTCGTCGTCCCAAAATTTTGCGGGTGGTGCTGGCTCTGGTGGATCAAGTGGTGGTGCTGCATCAAGAAATAATATGAATGTTGAGGTGAGGAGAAACAAGCTTAATAAGGTGGAAGGGGGAAATCACAGAGTTGCATTTAGAACAAAATCGGAGCTGGAGGTCATGGATGATGGATTCAAGTGGAGGAAGTATGGAATGAAGTCGGTCAAAAACAGCCCAAATCCAAGAAATTACTACAAATGTTCAAATGGAGGCTGCAATGTAAAGAAGAGGGTAGAGAGGGACCGAGATGATGCGAGCTATGTTATAACCACATATGAAGGAGTGCACAATCATGAGAGCCCTTCTGTCGTTTATTACAATCAGATGCATGCTGATCCCAACAACATTTGGACTTTGCGAGCTTCTTCACAATCTTCAGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

200

Amino Acids

22.26

Weight (kDa)

5.86

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	112 - 169	8.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AciI	CCGC	2 cut(s)	68, 188
AclWI	GGATC	5 cut(s)	14, 27, 59, 217, 539
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	96, 346, 414
AluBI	AGCT	6 cut(s)	91, 268, 322, 468, 572, 590
AluI	AGCT	6 cut(s)	91, 268, 322, 468, 572, 590
Alw21I	GWGCWC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	494
AlwI	GGATC	5 cut(s)	14, 27, 59, 217, 539
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	224, 423
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	211, 410
BccI	CCATC	2 cut(s)	70, 332
BclI	TGATCA	1 cut(s)	133
BisI	GCNGC	2 cut(s)	225, 424
BlsI	GCNGC	2 cut(s)	226, 425
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	21, 452
BmsI	GCATC	3 cut(s)	236, 451, 525
BpmI	CTGGAG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	211, 410
BsiHKAI	GWGCWC	1 cut(s)	498
BslFI	GGGAC	2 cut(s)	160, 464
BsmFI	GGGAC	2 cut(s)	160, 464
Bsp1286I	GDGCHC	2 cut(s)	498, 512
Bsp143I	GATC	5 cut(s)	19, 64, 133, 209, 544
BspACI	CCGC	2 cut(s)	68, 188
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	21, 452
BspPI	GGATC	5 cut(s)	14, 27, 59, 217, 539
BsrDI	GCAATG	1 cut(s)	433
BssMI	GATC	5 cut(s)	19, 64, 133, 209, 544
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	199, 466, 540, 570
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	5 cut(s)	22, 67, 136, 212, 547
BstMBI	GATC	5 cut(s)	19, 64, 133, 209, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	211, 410
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	4 cut(s)	199, 466, 540, 570
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	4 cut(s)	106, 331, 503, 539
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	5 cut(s)	21, 66, 135, 211, 546
DpnII	GATC	5 cut(s)	19, 64, 133, 209, 544
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	512
FaeI	CATG	4 cut(s)	109, 334, 506, 542
FaqI	GGGAC	2 cut(s)	160, 464
FatI	CATG	4 cut(s)	105, 330, 502, 538
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	225, 424
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	225, 424
GluI	GCNGC	2 cut(s)	225, 424
GsuI	CTGGAG	1 cut(s)	344
Hin1II	CATG	4 cut(s)	109, 334, 506, 542
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	143, 342
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	75, 319, 534
Hpy188III	TCNNGA	5 cut(s)	11, 131, 140, 231, 503
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	3 cut(s)	65, 157, 175
HpyAV	CCTTC	3 cut(s)	275, 482, 522
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	227, 302, 426, 496, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	109, 334, 506, 542
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	19, 64, 133, 209, 544
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	3 cut(s)	183, 189, 308
Lsp1109I	GCAGC	2 cut(s)	211, 410
LweI	GCATC	3 cut(s)	236, 451, 525
MalI	GATC	5 cut(s)	21, 66, 135, 211, 546
MboI	GATC	5 cut(s)	19, 64, 133, 209, 544
MboII	GAAGA	6 cut(s)	138, 141, 448, 567, 576, 585
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	498, 512
MluCI	AATT	2 cut(s)	181, 397
MnlI	CCTC	9 cut(s)	10, 81, 244, 249, 319, 345, 413, 432, 441
Mph1103I	ATGCAT	1 cut(s)	540
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	5 cut(s)	19, 64, 133, 209, 544
NlaIII	CATG	4 cut(s)	109, 334, 506, 542
NlaIV	GGNNCC	2 cut(s)	21, 452
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	143, 342
PkrI	GCNGC	2 cut(s)	226, 425
PsiI	TTATAA	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	21, 452
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	225, 424
Sau3AI	GATC	5 cut(s)	19, 64, 133, 209, 544
Sau96I	GGNCC	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	498, 512
SetI	ASST	9 cut(s)	93, 255, 270, 279, 324, 330, 470, 574, 592
SfaNI	GCATC	3 cut(s)	236, 451, 525
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	501
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	2 cut(s)	181, 397
SsiI	CCGC	2 cut(s)	68, 188
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	2 cut(s)	361, 468
TasI	AATT	2 cut(s)	181, 397
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	143, 342
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	2 cut(s)	224, 423
TspDTI	ATGAA	4 cut(s)	257, 380, 501, 585
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.