Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

29463832 .. 29465768

Gene Structure 1937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGTTTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGCTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCAGTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

9.35

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	26 - 83	1.4e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	31
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	88, 277
AhlI	ACTAGT	1 cut(s)	289
AluBI	AGCT	4 cut(s)	64, 210, 268, 335
AluI	AGCT	4 cut(s)	64, 210, 268, 335
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	299, 312
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	165, 265, 284
AvaI	CYCGRG	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	152, 271, 277
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	3 cut(s)	166, 266, 285
BlsI	GCNGC	3 cut(s)	167, 267, 286
BmeT110I	CYCGRG	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	86, 254
BpuEI	CTTGAG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	303
BseGI	GGATG	2 cut(s)	82, 304
BseJI	GATNNNNATC	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	152, 271, 277
BsgI	GTGCAG	2 cut(s)	270, 284
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	69, 304
BspANI	GGCC	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	299, 312
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	69, 304
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	82, 304
BstKTI	GATC	2 cut(s)	72, 307
BstMBI	GATC	2 cut(s)	69, 304
BstV1I	GCAGC	3 cut(s)	152, 271, 277
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	82, 304
Cac8I	GCNNGC	1 cut(s)	163
CciI	TCATGA	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	29, 73, 245
CviJI	RGCY	7 cut(s)	33, 64, 126, 165, 210, 268, 335
CviKI_1	RGCY	7 cut(s)	33, 64, 126, 165, 210, 268, 335
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	2 cut(s)	71, 306
DpnII	GATC	2 cut(s)	69, 304
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	205
FaeI	CATG	3 cut(s)	32, 76, 248
FaiI	YATR	7 cut(s)	30, 36, 74, 213, 226, 246, 361
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	28, 72, 244
Fnu4HI	GCNGC	3 cut(s)	166, 266, 285
FokI	GGATG	2 cut(s)	89, 311
Fsp4HI	GCNGC	3 cut(s)	166, 266, 285
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	3 cut(s)	166, 266, 285
GsuI	CTGGAG	2 cut(s)	86, 254
HaeIII	GGCC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	32, 76, 248
HinfI	GANTC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	118, 245
HpyAV	CCTTC	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	44, 238, 265, 287
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	32, 76, 248
Kzo9I	GATC	2 cut(s)	69, 304
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	50, 147, 148, 284, 294
Lsp1109I	GCAGC	3 cut(s)	152, 271, 277
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	71, 306
MboI	GATC	2 cut(s)	69, 304
MboII	GAAGA	6 cut(s)	16, 190, 212, 330, 339, 348
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	139, 256
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	87, 183, 223
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	240
NdeII	GATC	2 cut(s)	69, 304
NlaIII	CATG	3 cut(s)	32, 76, 248
NlaIV	GGNNCC	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	167, 267, 286
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	306
PspXI	VCTCGAGB	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	3 cut(s)	166, 266, 285
Sau3AI	GATC	2 cut(s)	69, 304
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	66, 212, 270, 318, 337
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	154, 205
SmoI	CTYRAG	2 cut(s)	154, 205
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	2 cut(s)	139, 256
SspMI	CTAG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	139, 256
TseI	GCWGC	3 cut(s)	165, 265, 284
TspDTI	ATGAA	2 cut(s)	17, 348
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.